Sed0003191 (gene) Chayote v1

Overview


Name	Sed0003191
Type	gene
Organism	Sechium edule (Chayote v1)
Description	glycine-rich RNA-binding protein GRP2A-like
Location	LG04: 30075373 .. 30076081 (+)
RNA-Seq Expression	Sed0003191
Synteny	Sed0003191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTCAAACATTAAAGCAAGTAAACTTGGAAGGTCTTTTTTTGGCTTATAATGTTTGATATGCAACCTTCCATCATCCTTCTCATAATTTGCGCTTCTTTACTAGCTGCTGTTGTGGTTTTATGTTGTTTTTGTATATTTCGAGGCCGAAAAAAGAAAGAATCAACACGGCCTACTCCTAGTGGTTCTGTTAGTTCAAGGCCTCCGCCTTGGCCGCGACAATTGTACTATGATGTCGAGTTGGGACAAGGCACTCGAGCATACAGACTTGACACTCAAACAAGCGAAGAACAAAGCATTCGACCAGATAGACAAGGTGCTTATGATAGAAGCGAAGAACACAGTATTCGAAGTAGTCGAAGAAGCGAACCCAGCGTTCGACAAGACAGACAAGGCTTTCGAGGAAGCGGAATCAAGGACGGTGGGATGGCCATATTGGCTGGAGCTGGAGCCGCTATGGCTACTGCAGCTGCAACTCTTGGTTTAAGTAGTGGTCGAGGAGAAGAATATGATGGCTATGGTGATGACTATAGTCGAGATGGTGATCATGCCGACTACGAGGGCGGAGTTGGTGGTGGCATATGCGGTGCTGGCTGTGGAGGGGTCGGTGGCAGCGCCTGTGCTGCTGGCTGTGGCAATAGCTCACAACTCTGAGGATCAATGCCACAAGCTTTTTCAGAGTCCTTTGTTTGCTTACTTCTTGTTCCAAT

mRNA sequence

GCTTCAAACATTAAAGCAAGTAAACTTGGAAGGTCTTTTTTTGGCTTATAATGTTTGATATGCAACCTTCCATCATCCTTCTCATAATTTGCGCTTCTTTACTAGCTGCTGTTGTGGTTTTATGTTGTTTTTGTATATTTCGAGGCCGAAAAAAGAAAGAATCAACACGGCCTACTCCTAGTGGTTCTGTTAGTTCAAGGCCTCCGCCTTGGCCGCGACAATTGTACTATGATGTCGAGTTGGGACAAGGCACTCGAGCATACAGACTTGACACTCAAACAAGCGAAGAACAAAGCATTCGACCAGATAGACAAGGTGCTTATGATAGAAGCGAAGAACACAGTATTCGAAGTAGTCGAAGAAGCGAACCCAGCGTTCGACAAGACAGACAAGGCTTTCGAGGAAGCGGAATCAAGGACGGTGGGATGGCCATATTGGCTGGAGCTGGAGCCGCTATGGCTACTGCAGCTGCAACTCTTGGTTTAAGTAGTGGTCGAGGAGAAGAATATGATGGCTATGGTGATGACTATAGTCGAGATGGTGATCATGCCGACTACGAGGGCGGAGTTGGTGGTGGCATATGCGGTGCTGGCTGTGGAGGGGTCGGTGGCAGCGCCTGTGCTGCTGGCTGTGGCAATAGCTCACAACTCTGAGGATCAATGCCACAAGCTTTTTCAGAGTCCTTTGTTTGCTTACTTCTTGTTCCAAT

Coding sequence (CDS)

ATGTTTGATATGCAACCTTCCATCATCCTTCTCATAATTTGCGCTTCTTTACTAGCTGCTGTTGTGGTTTTATGTTGTTTTTGTATATTTCGAGGCCGAAAAAAGAAAGAATCAACACGGCCTACTCCTAGTGGTTCTGTTAGTTCAAGGCCTCCGCCTTGGCCGCGACAATTGTACTATGATGTCGAGTTGGGACAAGGCACTCGAGCATACAGACTTGACACTCAAACAAGCGAAGAACAAAGCATTCGACCAGATAGACAAGGTGCTTATGATAGAAGCGAAGAACACAGTATTCGAAGTAGTCGAAGAAGCGAACCCAGCGTTCGACAAGACAGACAAGGCTTTCGAGGAAGCGGAATCAAGGACGGTGGGATGGCCATATTGGCTGGAGCTGGAGCCGCTATGGCTACTGCAGCTGCAACTCTTGGTTTAAGTAGTGGTCGAGGAGAAGAATATGATGGCTATGGTGATGACTATAGTCGAGATGGTGATCATGCCGACTACGAGGGCGGAGTTGGTGGTGGCATATGCGGTGCTGGCTGTGGAGGGGTCGGTGGCAGCGCCTGTGCTGCTGGCTGTGGCAATAGCTCACAACTCTGA

Protein sequence

MFDMQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTPSGSVSSRPPPWPRQLYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSIRSSRRSEPSVRQDRQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHADYEGGVGGGICGAGCGGVGGSACAAGCGNSSQL

Homology

[Close]

BLAST of Sed0003191 vs. NCBI nr
Match: XP_023543717.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 4.8e-52
Identity = 138/216 (63.89%), Postives = 157/216 (72.69%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTPSGSVSSR---PPPWPRQ 60
           MFD++PSII+LIICASLLAAVV+LCC CI RGR++K+STRPTPSGS+SSR   PPPWPRQ
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRRRKDSTRPTPSGSISSRRPPPPPWPRQ 60

Query: 61  LYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSI-----RSSRRSEPSVRQD 120
            YYDVE GQG RAYR DT  S EQS+  DR GA  RSE +S      RSS+ SEPSV +D
Sbjct: 61  SYYDVESGQGIRAYRQDTLRS-EQSVPSDRHGA-QRSERYSFRTDRSRSSQSSEPSVGRD 120

Query: 121 RQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHAD---- 180
           +Q    SG KDGGMAILAGAGAAMA AAA +GLSSG G+EY G GD Y  DG   D    
Sbjct: 121 KQ----SGFKDGGMAILAGAGAAMAAAAAAIGLSSGGGQEYGGNGDGYWGDGSRTDGYGD 180

Query: 181 ------YEGGV-GGGICGAGCGGVGGSACAAGCGNS 198
                  +GG  GGG+CGAGCG VGGSAC +  GN+
Sbjct: 181 SWGNGNRDGGSGGGGVCGAGCGSVGGSACGSTGGNN 210

[Close]

BLAST of Sed0003191 vs. NCBI nr
Match: XP_022942031.1 (glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata])

HSP 1 Score: 211.1 bits (536), Expect = 9.0e-51
Identity = 136/217 (62.67%), Postives = 156/217 (71.89%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTPSGSVSSR----PPPWPR 60
           MFD++PSII+LIICASLLAAVV+LCC CI RGRK+K+STRPTPSGS+SSR    PPPWPR
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60

Query: 61  QLYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSI-----RSSRRSEPSVRQ 120
           Q YYDVE GQG RAYR DT  S EQS+  DR GA  RSE++S      RS++ SEPSV +
Sbjct: 61  QSYYDVESGQGIRAYRQDTLRS-EQSVPSDRHGA-QRSEQYSFRTDRSRSNQSSEPSVGR 120

Query: 121 DRQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHAD--- 180
           D++    SG KDGGMAI AGAGAAMA AAA LGLSSG G+EY G GD Y  D    D   
Sbjct: 121 DKR----SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTDGYG 180

Query: 181 -------YEGGV-GGGICGAGCGGVGGSACAAGCGNS 198
                   +GG  GGG+CGAGCG VGGSAC +  GN+
Sbjct: 181 DSCGNGNRDGGSGGGGVCGAGCGSVGGSACGSTGGNN 211

[Close]

BLAST of Sed0003191 vs. NCBI nr
Match: KAG6600486.1 (hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-50
Identity = 137/216 (63.43%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTPSGSVSSR---PPPWPRQ 60
           MFD++PSII+LIICASLLAAVV+LCC CI RGRK+K+STRPTPSGS+SSR   PPPWPRQ
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPWPRQ 60

Query: 61  LYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSI-----RSSRRSEPSVRQD 120
            YYDVE GQG RA+R DT  S EQS+  DR GA  RSE++S      RSS+ SEPSV +D
Sbjct: 61  SYYDVESGQGIRAFRQDTLRS-EQSVPSDRHGA-QRSEQYSFRTDRSRSSQSSEPSVGRD 120

Query: 121 RQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRD-------GD 180
           ++    SG KDGGMAI AGAGAAMA AAA LGLSSG G+EY G GD Y  D       GD
Sbjct: 121 KR----SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSLTDGYGD 180

Query: 181 ---HADYEGGV-GGGICGAGCGGVGGSACAAGCGNS 198
              + + +GG  GGG+CGAGCG VGGSAC +  GN+
Sbjct: 181 SCGNGNRDGGSGGGGVCGAGCGSVGGSACGSTGGNN 210

[Close]

BLAST of Sed0003191 vs. NCBI nr
Match: KAE8649249.1 (hypothetical protein Csa_015081, partial [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-20
Identity = 100/231 (43.29%), Postives = 131/231 (56.71%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFR-GRKKKESTR-PTPSGSVSSRPPPWPRQL 60
           + D++PSI+++IIC SL+    +LCCFCI   G +KK++ + PTPS S+       P Q 
Sbjct: 15  LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSR---PLQT 74

Query: 61  YYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYD------------RSEEHSI----RSS 120
           Y D+E GQG R YR D+    E+SI  D +G+              ++ E SI    RSS
Sbjct: 75  YRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSS 134

Query: 121 RRSEPSV-----------RQDRQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGE 180
           RR+E S+           + DRQ  R S IKDGGMAILAGAGAA+ATAA  LGLSS +G 
Sbjct: 135 RRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQG- 194

Query: 181 EYDGYGDDYSRDGDHADY--EGGVGGGICGAGCGGVGGSACAAGCGNSSQL 201
                G+D   DGD+ D   +G  GGG+ G   GGVG ++     GN SQL
Sbjct: 195 -----GEDI--DGDYVDNCDDGTDGGGVYG---GGVGSNS----YGNGSQL 227

[Close]

BLAST of Sed0003191 vs. NCBI nr
Match: XP_022142785.1 (ctenidin-3-like [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 6.3e-20
Identity = 94/216 (43.52%), Postives = 109/216 (50.46%), Query Frame = 0


Query: 4   MQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTP--SGSVSSRPPPWPRQLY-- 63
           M+P   +LIIC+S++AAVV+LCC CI  GRKKKE+ R TP  S ++ SR  PWPRQ Y  
Sbjct: 1   MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSR-LPWPRQTYHV 60

Query: 64  YDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSIRSSRRSEPSVRQDRQGFRGS 123
           +D+E GQG R                                          +RQG RGS
Sbjct: 61  HDIEPGQGART-----------------------------------------NRQGARGS 120

Query: 124 GIKDGGMAILAGAGAAMATAAATLGLSS-GRGEEY------DGYGDDYSRDGDHADYEGG 183
           GIKDGGMAILAGAG A+ATAA   GLSS GR   Y       G  D Y  DG   D +GG
Sbjct: 121 GIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGG 174

Query: 184 --------VGGGICGAGCGGVGGSACAAGCGNSSQL 201
                    GGG CG G GG G      GCG  S+L
Sbjct: 181 GDCGDGGKGGGGGCGDGGGGGGCGGGCGGCGGGSEL 174

[Close]

BLAST of Sed0003191 vs. ExPASy TrEMBL
Match: A0A6J1FMR9 (glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111447219 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.3e-51
Identity = 136/217 (62.67%), Postives = 156/217 (71.89%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTPSGSVSSR----PPPWPR 60
           MFD++PSII+LIICASLLAAVV+LCC CI RGRK+K+STRPTPSGS+SSR    PPPWPR
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60

Query: 61  QLYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSI-----RSSRRSEPSVRQ 120
           Q YYDVE GQG RAYR DT  S EQS+  DR GA  RSE++S      RS++ SEPSV +
Sbjct: 61  QSYYDVESGQGIRAYRQDTLRS-EQSVPSDRHGA-QRSEQYSFRTDRSRSNQSSEPSVGR 120

Query: 121 DRQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHAD--- 180
           D++    SG KDGGMAI AGAGAAMA AAA LGLSSG G+EY G GD Y  D    D   
Sbjct: 121 DKR----SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTDGYG 180

Query: 181 -------YEGGV-GGGICGAGCGGVGGSACAAGCGNS 198
                   +GG  GGG+CGAGCG VGGSAC +  GN+
Sbjct: 181 DSCGNGNRDGGSGGGGVCGAGCGSVGGSACGSTGGNN 211

[Close]

BLAST of Sed0003191 vs. ExPASy TrEMBL
Match: A0A0A0L0B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 100/231 (43.29%), Postives = 131/231 (56.71%), Query Frame = 0


Query: 1   MFDMQPSIILLIICASLLAAVVVLCCFCIFR-GRKKKESTR-PTPSGSVSSRPPPWPRQL 60
           + D++PSI+++IIC SL+    +LCCFCI   G +KK++ + PTPS S+       P Q 
Sbjct: 2   LLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSR---PLQT 61

Query: 61  YYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYD------------RSEEHSI----RSS 120
           Y D+E GQG R YR D+    E+SI  D +G+              ++ E SI    RSS
Sbjct: 62  YRDIEFGQGIRTYRQDSTPRSERSISSDTRGSQRGEQSIFTDARGFQTSEQSIFPDTRSS 121

Query: 121 RRSEPSV-----------RQDRQGFRGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGE 180
           RR+E S+           + DRQ  R S IKDGGMAILAGAGAA+ATAA  LGLSS +G 
Sbjct: 122 RRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQG- 181

Query: 181 EYDGYGDDYSRDGDHADY--EGGVGGGICGAGCGGVGGSACAAGCGNSSQL 201
                G+D   DGD+ D   +G  GGG+ G   GGVG ++     GN SQL
Sbjct: 182 -----GEDI--DGDYVDNCDDGTDGGGVYG---GGVGSNS----YGNGSQL 214

[Close]

BLAST of Sed0003191 vs. ExPASy TrEMBL
Match: A0A6J1CLX2 (ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 94/216 (43.52%), Postives = 109/216 (50.46%), Query Frame = 0


Query: 4   MQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTRPTP--SGSVSSRPPPWPRQLY-- 63
           M+P   +LIIC+S++AAVV+LCC CI  GRKKKE+ R TP  S ++ SR  PWPRQ Y  
Sbjct: 1   MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSR-LPWPRQTYHV 60

Query: 64  YDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSIRSSRRSEPSVRQDRQGFRGS 123
           +D+E GQG R                                          +RQG RGS
Sbjct: 61  HDIEPGQGART-----------------------------------------NRQGARGS 120

Query: 124 GIKDGGMAILAGAGAAMATAAATLGLSS-GRGEEY------DGYGDDYSRDGDHADYEGG 183
           GIKDGGMAILAGAG A+ATAA   GLSS GR   Y       G  D Y  DG   D +GG
Sbjct: 121 GIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSCGDGDGG 174

Query: 184 --------VGGGICGAGCGGVGGSACAAGCGNSSQL 201
                    GGG CG G GG G      GCG  S+L
Sbjct: 181 GDCGDGGKGGGGGCGDGGGGGGCGGGCGGCGGGSEL 174

[Close]

BLAST of Sed0003191 vs. ExPASy TrEMBL
Match: A0A5A7VBP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00990 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 88/199 (44.22%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 32  GRKKKES-TRPTPSGSVSSRPPPWPRQLYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGA 91
           G KKK++   PTPS S+       P Q Y DVE GQG R YR D+    EQSI PD +G+
Sbjct: 5   GYKKKDAHGLPTPSVSIGRSR---PLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGS 64

Query: 92  YD------------RSEEHSI----RSSRRSE------------PSVRQDRQ-GFRGSGI 151
                         ++ E SI    RSSRR+E             S R DRQ   R S I
Sbjct: 65  QRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRI 124

Query: 152 KDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHADYEGGVGGGICGAG 201
           KDGGMAILAGAGAA+ATAA  LGLSS +G      G+D   DG + D     G G  G+G
Sbjct: 125 KDGGMAILAGAGAAIATAATVLGLSSYQG------GEDI--DGGYVD---NCGDGTDGSG 184

[Close]

BLAST of Sed0003191 vs. ExPASy TrEMBL
Match: A0A2P5CH37 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_285070 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 73/199 (36.68%), Postives = 87/199 (43.72%), Query Frame = 0


Query: 4   MQPSIILLIICASLLAAVVVLCCFCIFRGRKKKESTR-PTP------SGSVSSRPPPWPR 63
           M+   I L+ C S++AAV++L C C  RG KKK  TR P P      SG+  S   P+P 
Sbjct: 1   MKAYAIALVACGSVIAAVIILVCLC-SRGNKKKMQTRTPNPIRMQSLSGTTPSAQRPYPA 60

Query: 64  QLYYDVELGQGTRAYRLDTQTSEEQSIRPDRQGAYDRSEEHSIRSSRRSEPSVRQDRQGF 123
               D+E G+GT+                                               
Sbjct: 61  G--PDIERGEGTK----------------------------------------------- 120

Query: 124 RGSGIKDGGMAILAGAGAAMATAAATLGLSSGRGEEYDGYGDDYSRDGDHADYEGGVGGG 183
           + SG KDGGM ILAGAGAA+AT AA   +SSG G    G GD  S         GG GGG
Sbjct: 121 KSSGTKDGGMVILAGAGAALATTAAVASISSGCGGGGGGDGDAGS---------GGDGGG 136

Query: 184 ICGAGCGGVGGSACAAGCG 196
            CG GCGG GG     GCG
Sbjct: 181 GCG-GCGGCGG---CGGCG 136

The following BLAST results are available for this feature:

BLAST of Sed0003191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543717.1	4.8e-52	63.89	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942031.1	9.0e-51	62.67	glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]	[more]
KAG6600486.1	2.0e-50	63.43	hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8649249.1	2.2e-20	43.29	hypothetical protein Csa_015081, partial [Cucumis sativus]	[more]
XP_022142785.1	6.3e-20	43.52	ctenidin-3-like [Momordica charantia]	[more]

BLAST of Sed0003191 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMR9	4.3e-51	62.67	glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0L0B2	1.0e-20	43.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1	[more]
A0A6J1CLX2	3.0e-20	43.52	ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1	[more]
A0A5A7VBP6	4.4e-11	44.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P5CH37	1.1e-06	36.68	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_285070 PE=4 SV...	[more]

BLAST of Sed0003191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003191.1	Sed0003191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane