Sed0002989 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAACCGCGCCGTTGTTCTACGCCGGCTGCGCCGATCACCTTCTTCCCGAGCCTCACTTCCTCGATTCCTGTTCTCTTTGCCGGAAACCGCTCGGCCGCAACTCCGATATCTTCATGTACAGGTCTGTTCAATTTTCCACCTCCTCGATGAGTTCCTGTTTTAGTTGAGTTTTGATTTGGAGTTTTCTGTTCGATTTCCGAGGATTTGAGGCTTCAGAAACGCCGATTTAGGTTTAGATCGGAATTTATGTTGTGTTTTTACTGTTTATGTTCGATCGAGTGGTGAAAGTAGTTTTGGAGTTGAATTAGGTTCAAATCGGACAGATTTGTGGTTTTTTTGTTCTGATTTTGAGGTTTAGATCTTAGAATTGAACGTTTTGTTACTGTATTGCAGAGGAAACGCTCCGTTTTGCAGCAAGGAGTGCCGGCAAGAACAGATTGACGTCGATGAGGAGAAGGAGAGAAAATGGAGACGTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCGAGTTCTCAGATTCACAAGAACAAAGAATCTAGCAAGAAAACTGTACGGTCCGGCACCGTCGTGGTGGCCTGA ATGAGAACCGCGCCGTTGTTCTACGCCGGCTGCGCCGATCACCTTCTTCCCGAGCCTCACTTCCTCGATTCCTGTTCTCTTTGCCGGAAACCGCTCGGCCGCAACTCCGATATCTTCATGTACAGAGGAAACGCTCCGTTTTGCAGCAAGGAGTGCCGGCAAGAACAGATTGACGTCGATGAGGAGAAGGAGAGAAAATGGAGACGTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCGAGTTCTCAGATTCACAAGAACAAAGAATCTAGCAAGAAAACTGTACGGTCCGGCACCGTCGTGGTGGCCTGA ATGAGAACCGCGCCGTTGTTCTACGCCGGCTGCGCCGATCACCTTCTTCCCGAGCCTCACTTCCTCGATTCCTGTTCTCTTTGCCGGAAACCGCTCGGCCGCAACTCCGATATCTTCATGTACAGAGGAAACGCTCCGTTTTGCAGCAAGGAGTGCCGGCAAGAACAGATTGACGTCGATGAGGAGAAGGAGAGAAAATGGAGACGTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCGAGTTCTCAGATTCACAAGAACAAAGAATCTAGCAAGAAAACTGTACGGTCCGGCACCGTCGTGGTGGCCTGA MRTAPLFYAGCADHLLPEPHFLDSCSLCRKPLGRNSDIFMYRGNAPFCSKECRQEQIDVDEEKERKWRRSSSSSSSSSSSSSSSSSQIHKNKESSKKTVRSGTVVVA Homology
BLAST of Sed0002989 vs. NCBI nr
Match: XP_022146888.1 (uncharacterized protein LOC111015979 [Momordica charantia]) HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40 Identity = 92/108 (85.19%), Postives = 100/108 (92.59%), Query Frame = 0
BLAST of Sed0002989 vs. NCBI nr
Match: XP_022950439.1 (uncharacterized protein LOC111453538 [Cucurbita moschata] >XP_023538836.1 uncharacterized protein LOC111799645 [Cucurbita pepo subsp. pepo] >KAG6597253.1 FCS-Like Zinc finger 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028722.1 hypothetical protein SDJN02_09903 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38 Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. NCBI nr
Match: XP_022974769.1 (uncharacterized protein LOC111473492 [Cucurbita maxima] >XP_022975241.1 uncharacterized protein LOC111474355 [Cucurbita maxima]) HSP 1 Score: 168.7 bits (426), Expect = 2.7e-38 Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. NCBI nr
Match: XP_008438278.1 (PREDICTED: uncharacterized protein LOC103483439 [Cucumis melo]) HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36 Identity = 85/107 (79.44%), Postives = 97/107 (90.65%), Query Frame = 0
BLAST of Sed0002989 vs. NCBI nr
Match: XP_004133966.2 (FCS-Like Zinc finger 3 [Cucumis sativus]) HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36 Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy Swiss-Prot
Match: O80506 (FCS-Like Zinc finger 3 OS=Arabidopsis thaliana OX=3702 GN=FLZ3 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18 Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy Swiss-Prot
Match: Q8VZM9 (FCS-Like Zinc finger 2 OS=Arabidopsis thaliana OX=3702 GN=FLZ2 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy Swiss-Prot
Match: Q9FGQ9 (FCS-Like Zinc finger 1 OS=Arabidopsis thaliana OX=3702 GN=FLZ1 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13 Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy Swiss-Prot
Match: Q8VY80 (FCS-Like Zinc finger 5 OS=Arabidopsis thaliana OX=3702 GN=FLZ5 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 7.3e-10 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy Swiss-Prot
Match: Q9SGZ8 (FCS-Like Zinc finger 6 OS=Arabidopsis thaliana OX=3702 GN=FLZ6 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 6.2e-09 Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy TrEMBL
Match: A0A6J1CZR7 (uncharacterized protein LOC111015979 OS=Momordica charantia OX=3673 GN=LOC111015979 PE=3 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40 Identity = 92/108 (85.19%), Postives = 100/108 (92.59%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy TrEMBL
Match: A0A6J1GFT9 (uncharacterized protein LOC111453538 OS=Cucurbita moschata OX=3662 GN=LOC111453538 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 7.8e-39 Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy TrEMBL
Match: A0A6J1IIJ8 (uncharacterized protein LOC111473492 OS=Cucurbita maxima OX=3661 GN=LOC111473492 PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38 Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy TrEMBL
Match: A0A1S3AW02 (uncharacterized protein LOC103483439 OS=Cucumis melo OX=3656 GN=LOC103483439 PE=3 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 5.6e-37 Identity = 85/107 (79.44%), Postives = 97/107 (90.65%), Query Frame = 0
BLAST of Sed0002989 vs. ExPASy TrEMBL
Match: A0A0A0L3Z8 (FLZ-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G128930 PE=3 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36 Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 0
BLAST of Sed0002989 vs. TAIR 10
Match: AT2G44670.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19 Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0
BLAST of Sed0002989 vs. TAIR 10
Match: AT4G17670.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 77.4 bits (189), Expect = 7.7e-15 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0
BLAST of Sed0002989 vs. TAIR 10
Match: AT5G47060.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14 Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of Sed0002989 vs. TAIR 10
Match: AT1G22160.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 64.7 bits (156), Expect = 5.2e-11 Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0
BLAST of Sed0002989 vs. TAIR 10
Match: AT1G78020.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10 Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|