Sed0002966 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAAATATTCCACAGGAAATGTCAGAGACTCAAGGTTGGTTATCTTAAAGAGGTATTATATAAATACATCAAAAGCTTAAGCCATCAAAGCAGCCTTATCAAGTTTCATTTTTTCTTTTCTTTCTATTTGTGTTATTGTTCTTCATCTTGTTCTTGGATATGGGTGGAATTGAAAGACAATTGTTTCATCAACCATGTTCTGTTGCACTATGCCAAGAGTTCCATGAAGGATTAGAAGATCATTGGGTGAGCAAGGGAAATGGTGATCACTACGCCGCTGCGTCTTCGACATCTTCGGTCGAAGACTCATCGATCTCGAACGAATCGGTATCTTCCTTGGACTTGGCAGATGATGCATGCTCATCGACTTCGAATCCTTCATCTCAATCTAATGGATCATTGGAGGATTTCACAGAGCTTTTAGCCCAACTGCCAATCAAGTAAGTATTGATCTGATGCTTGGGATTCCCTTTCCTTTTGTATAAATTGTATCCTAAATGAAAACATCAATCTAAGTTGAGCATAACTTAACTAATTAAGATATTATATCCTCAATCAAAATGTTATGATTCAAATTTCCACCCCCACGTACCGTTAGAGCTCGAAAACATCAACAACATAAATTTAGGGATTGAGGATTCAAACCTACTATTTCTAAGTTGATGATACATGTCAATTACCTCCAGACTTAGTCCGCTTAGTCCATCAAGCTAAGTCTTAACTCAACTACATCCTGCAATTATGATTTCTAATCTACAAGATAAACATGGCTTTGGAGACTATTGCTAAATCAACCATCATCGATTGACTTAATAGCCAAAGAGAACCAACAAATTAATTGCTAAATTTTGTAGGATCAGACGATCTGTTCTATAAGAATAGTCGATGTGCATGTAAACTGATCCAAACAATCACAAATACAAAAAGAAAAACGAAAATATTGCTGAATCTATTCTAAATTTCTAATAGTGTAACTACTCTATTGTGCAGGAGAGGACTATCCATGTTCTATCAGGGAAAATCTCAGTCATTTGCATCTCTATCAAGTGTAAAAAGCATAGAGGATCTTCCAAAGAAGGAAAATTCTTATAGAAAAAGATTGAATGCATGTAAGAGCTATGCAGGTGGCTTGGATACTCACAAATCTTCTTATACTCTTCCAAAGCCTCCATCTTTTAAGAAGCCATCAAGAGATTCTATGACTTTTCTCCAAGTTAGAAGAGGCAGTACTTTGGCTGGTTGTAGATCTCCTTCCATTCCTCTATTTGATGAGAGCTTTTGATCTCTAAGAGCACCTTTCAACATTAAAATTGCTCAATTTTTGTTCACTTTTGCTTGTATATTAGGAATGTAAATGGCTGGATTTGTAGCATTATTGAGAATTTTATGATTATACTTGAATCCCACATCTTGTTTTCTTCTGAATGCAGCCAATGAATTGAAGAAGCCGGGA ATAAATATTCCACAGGAAATGTCAGAGACTCAAGGTTGGTTATCTTAAAGAGGTATTATATAAATACATCAAAAGCTTAAGCCATCAAAGCAGCCTTATCAAGTTTCATTTTTTCTTTTCTTTCTATTTGTGTTATTGTTCTTCATCTTGTTCTTGGATATGGGTGGAATTGAAAGACAATTGTTTCATCAACCATGTTCTGTTGCACTATGCCAAGAGTTCCATGAAGGATTAGAAGATCATTGGGTGAGCAAGGGAAATGGTGATCACTACGCCGCTGCGTCTTCGACATCTTCGGTCGAAGACTCATCGATCTCGAACGAATCGGTATCTTCCTTGGACTTGGCAGATGATGCATGCTCATCGACTTCGAATCCTTCATCTCAATCTAATGGATCATTGGAGGATTTCACAGAGCTTTTAGCCCAACTGCCAATCAAGAGAGGACTATCCATGTTCTATCAGGGAAAATCTCAGTCATTTGCATCTCTATCAAGTGTAAAAAGCATAGAGGATCTTCCAAAGAAGGAAAATTCTTATAGAAAAAGATTGAATGCATGTAAGAGCTATGCAGGTGGCTTGGATACTCACAAATCTTCTTATACTCTTCCAAAGCCTCCATCTTTTAAGAAGCCATCAAGAGATTCTATGACTTTTCTCCAAGTTAGAAGAGGCAGTACTTTGGCTGGTTGTAGATCTCCTTCCATTCCTCTATTTGATGAGAGCTTTTGATCTCTAAGAGCACCTTTCAACATTAAAATTGCTCAATTTTTGTTCACTTTTGCTTGTATATTAGGAATGTAAATGGCTGGATTTGTAGCATTATTGAGAATTTTATGATTATACTTGAATCCCACATCTTGTTTTCTTCTGAATGCAGCCAATGAATTGAAGAAGCCGGGA ATGGGTGGAATTGAAAGACAATTGTTTCATCAACCATGTTCTGTTGCACTATGCCAAGAGTTCCATGAAGGATTAGAAGATCATTGGGTGAGCAAGGGAAATGGTGATCACTACGCCGCTGCGTCTTCGACATCTTCGGTCGAAGACTCATCGATCTCGAACGAATCGGTATCTTCCTTGGACTTGGCAGATGATGCATGCTCATCGACTTCGAATCCTTCATCTCAATCTAATGGATCATTGGAGGATTTCACAGAGCTTTTAGCCCAACTGCCAATCAAGAGAGGACTATCCATGTTCTATCAGGGAAAATCTCAGTCATTTGCATCTCTATCAAGTGTAAAAAGCATAGAGGATCTTCCAAAGAAGGAAAATTCTTATAGAAAAAGATTGAATGCATGTAAGAGCTATGCAGGTGGCTTGGATACTCACAAATCTTCTTATACTCTTCCAAAGCCTCCATCTTTTAAGAAGCCATCAAGAGATTCTATGACTTTTCTCCAAGTTAGAAGAGGCAGTACTTTGGCTGGTTGTAGATCTCCTTCCATTCCTCTATTTGATGAGAGCTTTTGA MGGIERQLFHQPCSVALCQEFHEGLEDHWVSKGNGDHYAAASSTSSVEDSSISNESVSSLDLADDACSSTSNPSSQSNGSLEDFTELLAQLPIKRGLSMFYQGKSQSFASLSSVKSIEDLPKKENSYRKRLNACKSYAGGLDTHKSSYTLPKPPSFKKPSRDSMTFLQVRRGSTLAGCRSPSIPLFDESF Homology
BLAST of Sed0002966 vs. NCBI nr
Match: XP_038877919.1 (uncharacterized protein LOC120070129 [Benincasa hispida]) HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73 Identity = 148/191 (77.49%), Postives = 165/191 (86.39%), Query Frame = 0
BLAST of Sed0002966 vs. NCBI nr
Match: XP_008447561.1 (PREDICTED: uncharacterized protein LOC103489976 [Cucumis melo] >KAA0050854.1 Oxidative stress 3, putative isoform 2 [Cucumis melo var. makuwa] >TYK08498.1 Oxidative stress 3, putative isoform 2 [Cucumis melo var. makuwa]) HSP 1 Score: 278.1 bits (710), Expect = 5.7e-71 Identity = 140/190 (73.68%), Postives = 158/190 (83.16%), Query Frame = 0
BLAST of Sed0002966 vs. NCBI nr
Match: XP_004149181.1 (uncharacterized protein LOC101218329 [Cucumis sativus] >KGN58023.1 hypothetical protein Csa_011606 [Cucumis sativus]) HSP 1 Score: 268.1 bits (684), Expect = 5.9e-68 Identity = 139/190 (73.16%), Postives = 156/190 (82.11%), Query Frame = 0
BLAST of Sed0002966 vs. NCBI nr
Match: XP_022153661.1 (uncharacterized protein LOC111021114 [Momordica charantia]) HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65 Identity = 140/190 (73.68%), Postives = 159/190 (83.68%), Query Frame = 0
BLAST of Sed0002966 vs. NCBI nr
Match: XP_023524906.1 (uncharacterized protein LOC111788696 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 202.6 bits (514), Expect = 3.0e-48 Identity = 114/164 (69.51%), Postives = 123/164 (75.00%), Query Frame = 0
BLAST of Sed0002966 vs. ExPASy TrEMBL
Match: A0A5D3CBD2 (Oxidative stress 3, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00260 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.7e-71 Identity = 140/190 (73.68%), Postives = 158/190 (83.16%), Query Frame = 0
BLAST of Sed0002966 vs. ExPASy TrEMBL
Match: A0A1S3BH50 (uncharacterized protein LOC103489976 OS=Cucumis melo OX=3656 GN=LOC103489976 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.7e-71 Identity = 140/190 (73.68%), Postives = 158/190 (83.16%), Query Frame = 0
BLAST of Sed0002966 vs. ExPASy TrEMBL
Match: A0A0A0L8C9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G435530 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 2.8e-68 Identity = 139/190 (73.16%), Postives = 156/190 (82.11%), Query Frame = 0
BLAST of Sed0002966 vs. ExPASy TrEMBL
Match: A0A6J1DLD1 (uncharacterized protein LOC111021114 OS=Momordica charantia OX=3673 GN=LOC111021114 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 5.9e-66 Identity = 140/190 (73.68%), Postives = 159/190 (83.68%), Query Frame = 0
BLAST of Sed0002966 vs. ExPASy TrEMBL
Match: A0A6J1KCR8 (uncharacterized protein LOC111492699 OS=Cucurbita maxima OX=3661 GN=LOC111492699 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 1.8e-46 Identity = 113/164 (68.90%), Postives = 121/164 (73.78%), Query Frame = 0
BLAST of Sed0002966 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14 Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 0
BLAST of Sed0002966 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12 Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = 0
BLAST of Sed0002966 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0
BLAST of Sed0002966 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 4.4e-05 Identity = 45/138 (32.61%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of Sed0002966 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04 Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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