Sed0002806 (gene) Chayote v1

Overview


Name	Sed0002806
Type	gene
Organism	Sechium edule (Chayote v1)
Description	selenoprotein H
Location	LG03: 9823146 .. 9828126 (-)
RNA-Seq Expression	Sed0002806
Synteny	Sed0002806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACTGGCGCCATTCGTGGGACTTCGTGCCGCCATTTCCTTCCACAGAACAAACCCCGCAAAACTGCGTGGACGACGCACGACTGCTCCATCGACGGCCACAATCCCCTCTCCCACTCCCGCTCCATCTGGACCGTCGCTTCAAAACCCCACCGCCGATACATATAGCGCGGGAAAATCCACTCCATCCTCTGGATATCACTGCCAACCAACGGCCACGTTCACACCTCTCTTCCACCAGCTTCCTCTCTGTGTTTTCTAGGGTTTCGGATCTTCTCTCATGGCGCCGAGGAAGAGAACCAAGTCTCAGGAAGACGAGGCGGCGGTGGCCAAGCCGGCTCCGGCGACTCGGAGGTCGCCTCGGCTGGCGGCGAACTCGAAGGTTGATTCTGCGGCGGAGGAGTTGCCGAAGAGTAAGAAGGCGAAAGTGAGTAAGAAGCGGAAGCCGAAGCCGAAGCCCGAGGAGAATGGGGAGGTGGAAGCGGCCGAGAATGAAGGGGAGGAAGTTGATGCGGTATCGGAGATGGTTGGGGAGGATGTGAAGTGCAGAACGGTTGTGATTGAACACTGGTGAGGTTTTTGGGTTTTGTTTTCTTTGATTTTTTTGGTTGGAAATCGATTGTTATTAGGTTAAGTTAAGTTTAAAGTCGAAGTTGAAGTTGAAGTTTCGAGTGTTTGAGATTATGTTCGTTGAAGTTTTAATTAGGTTTTGTGAGTTCGTTGCTAGGTTAGGGTTTTCCCCCTTGTGACGCGGATTTTATATTTAGGGTTTCCAATTGTTAAGTTGTGCATCTCCCATGGCTTCTTCTTCTGCATCTCCCTCTGCCATTTCCTCCTTCCATTGCCGATTGCCTGATGTTTTCAGTCCTCTCCATGAAAACCAAATATTTTTCTATTTAGTTACTAAAATATGTGAAATGAAGAACGGAGAATGATCAGAATAGAAGCAACGGTAGTAAATGGTGAGGGAAGATGGTAGTGGATTGAAGGAACATGTTGAGATTCATTTGAACTATGTTGTTGCAGTATGATTACTTAGTTGGGGTCTCACTTTCATTGGGTTTATATATTTTTTTTTTATTGGAAACAAAACTTTTATTGATAGTTGAAAAGTTGCCTCCTATGGAAACATTGCACAAAACCATGCCACTGAGAGATTAAAGTGGTTAAGTATTTTGTATTCTGCTCATATGTATTTTGGACCGTATGTTATATCAGTGTTTTACGAGAGTTCACCTCATAAATTTTCCTTAAATCACAGTACCCCAATTTGACCAAACATTTGTATTCTTATGTCCTAAATAATAACACTTCTCTCCATGGACATACATAACTAACACATGGTTAATGAACCGTATCAATGACTTTGTTCTGTCTCACGTTTTATTTATTTTCTTGATTGGTGTTTATTATTTTCATAAGAGAACATACATGTAAAACAATGTGTCAATTTATTACCTTACGTATCCCAAATGATGGTTAAAGGTTAGAAGTTATTATTGCCTATTTGCATCTGATGCATCATGTTGTAATTTGTGTAAGCTTTTGGCTAACTCATAATACTCATTGAGAATTTATTTCGGTTAGCTTACTTTCAAAATTGCATTAACTTTTGCGGCGGCCAAGGTAGCAATTTTCCATGGAAGAAGGCCAACTTTTGACACGAACAATCTTTGATCTCTTAAATTGAGATGAAAATTAGAGGGAAAATGTGTTTGTTTTTAATAAGAAATCTAAGTTAGAGTAACACAAGGATCAACTGTCCCCCTTTATCCTTGGCTTTGTCTCTGCCTTTTTGCAATGTGACGTCTAATGAATAGAAAGAATAATGATAACTGAAATGTGGCCTTTCGTGGTTGTGGAGTATCTCCCATATTCTGGATTCTCTTGCCTTTCTCATGTCATCTGCAATGATTGTCTCTCTTATAAGTTTATAACAACTTATCCTCACAATTTTGTTCCCTTGTAGCAAACAGTGCCAATCCTTCAAGAAAAGGGCCATCCAGGTGCAAACTGGTCTAGAGAATGGTGTTCCTGGAATCACCGTGCGGCTCAACCCTGATAAGGTATCTTTCTGACATCTTCAACTTTTACACGCCCTTTGGGTTTTTAATTTTGTTCACCAAGCATAATCACCATTCATGCAATAATGATATGTTGACATGATTTTGTTTTGAATTTGTTCTTCATTTTCCTTCCATCTTGGGGAAGGTGGAGATTTTAGTTTCCAAGCATTTTCATTCTGAACCACCAGATAATGGCTTGTCCTTTTTAAGCTCACATGTTCATGCTGGGTAGATGCTAAGTGAGATTGAGAACCCCCTGGTTCTGAAGCCTTGAATTATCTTTGCTGTAACATGTTAACTTAGTTCTTGTTTTGTTTTCACTCCCTTTATATATTTTCAATTGAATTTGTTGTGCTGTCAAAGGGTTGGATGATATGGTTTTATTCTTTTATTTATAGCAATTTGTTAGGGTAACTGGAACGGGATATGGCATAATATAATCCATTCGAACTTAAGCTCTCATATATATTTTTTTAGAATCACTCAAAAGACCTTTGTTCACACTTAGATATTCTCTTCTCTTTCCATCACGAGGCTTTTATGCATTCCTAACTAGATTGCTACAAATCACTTAGATTTTGTGACGAAAACTGAAAATTTTTGGTGAATGTGTTTTTTTTAAAATGGAATTGTTGTTTTTCCCTTTCTAACTATGCTTTTATCTCTTAATAATTATGCAGCCAAGAAGGGGGTGCTTTGAAATTCGGAGTGAAGACGGGGAGAAGTTTATCAGTTTGTTGGTAATTATAACCTCAACTTATTTTTTGAAACAGCCTTTAACATTAATTACAATTTTTGTTTTTTTTTTTCCGATTGGAACTAAAAGAGAAATGATTCAATCATGATGGTCACGTTATGATTAATTTCCTATTAGTTTTCTTGGCACCAATTATGATAGGTCAAACGACTCTTTATTAGTCAAGTTGCAGGCAAGCTAACACATACACTCACAAATATATACATTTGTTTTGACATTTGGTGAACATATAAGTGCAAATTTTAGGATCTCATTATTCATTGGCTAACACTTAATTTGTTAAATTTGAAGTATAGAGTTCCTCTTGTTTGGTGTTAAATTTTAATCTTTTAATTTTGGATAACCTATATGTTGCTAATGCACGCTAAAAAAATTTCACATTTCTAAGGTTAAAGGGAAGATCTTGGGAATATAAGGAAGAACAAAGAGCTAGACTAGTGGTATCAGAGCTAGACTATTAACTTAGTAATGTGAGTGAAGATTTCTGGTCTATAACAAAGAGGACTAACCTCGTATAGTTTGGTATACTTTGTTTGAGGGGAGGCCTCTCTGATGTAGACAAAGGAGGTAAAGTTGCGAAGAGTTTGGAGTATACTTTGTTAGAGGGGAGAAATTGTTGCTAATACATACGAACAAAATCTGGACAACACCTTCATTGATATGAGACTTTTAGGATGATGACCATATAAAAAGCTATGAGGGCTTATGCCTAAAGTGGATAATATCATATCAATGTGGAGGTTTGTCGTCTGTAACTATTTTATTCATTTTTTGGTTCATTTGGATTTGTATTCTTTTTCCTAATTATTCTAGTTTTCCTCTAGCCGATTAGAATACTTTTTCTTTAATTCGTCCTAACTTTCTACACAAATTCCCTTTTATCATGATTCGGGAGAAGCAAACAACTCCCTTTGCTTTAAATTTTGATCTTTTAACTTTTAGGGGAAGAACTAAATGTTTCAGTTGCGGGTAGGTTAATTTGAACTATAGTCGTTCAATTAGGGCCTTGTGAATTTAGAGGTTGAGCCTAATTTATTGTGGTCACTTAAGAATTAATTTCTTATAGGTGTCCCCAAGGGGTGGCATAGTGGTTTAAGACTTAGGCTTTGAAGGTATGCTCCCTTCAAGGTTCCAGGTTCGAGACTCACTTGTGATATTACTCTTTCGATGTCTCCCTCGATCTGGCCTAGGGATGAGCGTGGTTACTTGTTTCAAAAAAAAAAAAATTTCTTACAAGTATAGTCTTGGGTTACATAAGTTGGTTCAAACACTCATTGATATATAAGCATCGGACCTTTAATTCAATTAGGTGCTTAGATTGATCAATATAACTGGACCTAATACGTAGAGAACCTTGGAAAATGTAAAGGCTACAGAGGCTACAGGTTCAGTTCATGGTGACCATCAATCTTGAAATTAATTTTATAGGAGTTTTCTTGGCAACCAAATAGTGTATAGTCATACCTATGTTCACATTATAAAACTTTCTACCACACCAATTTCACAATTTGAACAGATATAGAGTTAATGGGTCTTCGATTAAGTCTTTTTCTTTTTGTGCCCTAAAGATTTTACTAACTTTCTACATTTCTTGATAATGAGCTTGTAATATGATAAGTTCACTTATTAACTTCATTGCAATTATACACTCTAGACTATCAACAAAGCTTCCATATAACATCTATATGTTTTGGGTTTAGGACATGAAGCGACCTTTTACTCGTATGAAGGATTTGGAGATGGAGGAAGTTATTTCCGATATTGTTGAGAAGTTGAAAGGATAATGAAGACCTTCGATAAAAAATCGCCTTATAAGGAGGAAATGTTTTTTGTGGTGGTTTGAAGCTAACCAACTAGAGTTTGATGGTGCAAACTTAGCAAATGATCATTGACAATGGCTAATATTGTGTTGGAATTGATTGTAAAGGTAAAGGCATCAGGTATGATGAACAAACACTGGTAGGGTTATTTTTTGGTTTAAACTTCAAAATGAATGAGTTTTATCTTTGAAGAAGGTTGTCCTTTGTATTACTTCTGTTCTACTATGAGGGGCTTCATGTTGCATCCTTAGATTGTGTGAATCATTGGAGTTCTTTGCATATCTGGTTTTTATAACAGATGGTTTTGAAATTCAATTTTGTTGGTTTAATCCACAGGT

mRNA sequence

GAGACTGGCGCCATTCGTGGGACTTCGTGCCGCCATTTCCTTCCACAGAACAAACCCCGCAAAACTGCGTGGACGACGCACGACTGCTCCATCGACGGCCACAATCCCCTCTCCCACTCCCGCTCCATCTGGACCGTCGCTTCAAAACCCCACCGCCGATACATATAGCGCGGGAAAATCCACTCCATCCTCTGGATATCACTGCCAACCAACGGCCACGTTCACACCTCTCTTCCACCAGCTTCCTCTCTGTGTTTTCTAGGGTTTCGGATCTTCTCTCATGGCGCCGAGGAAGAGAACCAAGTCTCAGGAAGACGAGGCGGCGGTGGCCAAGCCGGCTCCGGCGACTCGGAGGTCGCCTCGGCTGGCGGCGAACTCGAAGGTTGATTCTGCGGCGGAGGAGTTGCCGAAGAGTAAGAAGGCGAAAGTGAGTAAGAAGCGGAAGCCGAAGCCGAAGCCCGAGGAGAATGGGGAGGTGGAAGCGGCCGAGAATGAAGGGGAGGAAGTTGATGCGGTATCGGAGATGGTTGGGGAGGATGTGAAGTGCAGAACGGTTGTGATTGAACACTGCAAACAGTGCCAATCCTTCAAGAAAAGGGCCATCCAGGTGCAAACTGGTCTAGAGAATGGTGTTCCTGGAATCACCGTGCGGCTCAACCCTGATAAGCCAAGAAGGGGGTGCTTTGAAATTCGGAGTGAAGACGGGGAGAAGTTTATCAGTTTGTTGGACATGAAGCGACCTTTTACTCGTATGAAGGATTTGGAGATGGAGGAAGTTATTTCCGATATTGTTGAGAAGTTGAAAGGATAATGAAGACCTTCGATAAAAAATCGCCTTATAAGGAGGAAATGTTTTTTGTGGTGGTTTGAAGCTAACCAACTAGAGTTTGATGGTGCAAACTTAGCAAATGATCATTGACAATGGCTAATATTGTGTTGGAATTGATTGTAAAGGTAAAGGCATCAGGTATGATGAACAAACACTGGTAGGGTTATTTTTTGGTTTAAACTTCAAAATGAATGAGTTTTATCTTTGAAGAAGGTTGTCCTTTGTATTACTTCTGTTCTACTATGAGGGGCTTCATGTTGCATCCTTAGATTGTGTGAATCATTGGAGTTCTTTGCATATCTGGTTTTTATAACAGATGGTTTTGAAATTCAATTTTGTTGGTTTAATCCACAGGT

Coding sequence (CDS)

ATGGCGCCGAGGAAGAGAACCAAGTCTCAGGAAGACGAGGCGGCGGTGGCCAAGCCGGCTCCGGCGACTCGGAGGTCGCCTCGGCTGGCGGCGAACTCGAAGGTTGATTCTGCGGCGGAGGAGTTGCCGAAGAGTAAGAAGGCGAAAGTGAGTAAGAAGCGGAAGCCGAAGCCGAAGCCCGAGGAGAATGGGGAGGTGGAAGCGGCCGAGAATGAAGGGGAGGAAGTTGATGCGGTATCGGAGATGGTTGGGGAGGATGTGAAGTGCAGAACGGTTGTGATTGAACACTGCAAACAGTGCCAATCCTTCAAGAAAAGGGCCATCCAGGTGCAAACTGGTCTAGAGAATGGTGTTCCTGGAATCACCGTGCGGCTCAACCCTGATAAGCCAAGAAGGGGGTGCTTTGAAATTCGGAGTGAAGACGGGGAGAAGTTTATCAGTTTGTTGGACATGAAGCGACCTTTTACTCGTATGAAGGATTTGGAGATGGAGGAAGTTATTTCCGATATTGTTGAGAAGTTGAAAGGATAA

Protein sequence

MAPRKRTKSQEDEAAVAKPAPATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

Homology

[Close]

BLAST of Sed0002806 vs. NCBI nr
Match: XP_023536837.1 (selenoprotein H-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-58
Identity = 129/180 (71.67%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAP+KR+K QEDE A AKP P    ATRRSPRLAANSK D   EE       K+ K++K 
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPASSRATRRSPRLAANSKADLTVEE----PVVKLPKRKKA 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
           K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEHCKQCQSFKKRAI+VQ GLE 
Sbjct: 61  KRAPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAIEVQNGLEK 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Sed0002806 vs. NCBI nr
Match: XP_022950994.1 (selenoprotein H-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 8.7e-58
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAP+KR+K QEDE AVAKP PA    TRRSPRLA NSK D   EE       K+ K++K 
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEE----TVVKLPKRKKA 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
           K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEHCKQCQSFKKRA++VQ GLE 
Sbjct: 61  KRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEK 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Sed0002806 vs. NCBI nr
Match: XP_008445096.1 (PREDICTED: selenoprotein H [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-57
Identity = 129/180 (71.67%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAPRKR+K+QE+E+A+ KPAPA    TR S RLAANSK D    ELPKSKKAK +     
Sbjct: 1   MAPRKRSKNQEEESAMEKPAPATSRVTRSSARLAANSKADLTVTELPKSKKAKRA----- 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
              P+ENG+VE  EN+  +VD   E   +D K RTVVIEHCKQCQSFKKRAIQVQTGLEN
Sbjct: 61  ---PKENGKVEEVENKEVKVDVGLEKPDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMK+L+M+EVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGKKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG 172

[Close]

BLAST of Sed0002806 vs. NCBI nr
Match: XP_004138763.1 (selenoprotein H [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 7.4e-57
Identity = 129/180 (71.67%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +     
Sbjct: 1   MAPRKRTKNQEEDLVVEKPAPATSRLTRSSARLAANSKADLTVTELPKSKKAKRA----- 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
              P+ENG+VE  EN+  +VD     + +D K RTVVIEHCKQCQSFKKRAIQVQTGLEN
Sbjct: 61  ---PKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG 172

[Close]

BLAST of Sed0002806 vs. NCBI nr
Match: KAE8652181.1 (hypothetical protein Csa_022241 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 7.4e-57
Identity = 129/180 (71.67%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +     
Sbjct: 77  MAPRKRTKNQEEDLVVEKPAPATSRLTRSSARLAANSKADLTVTELPKSKKAKRA----- 136

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
              P+ENG+VE  EN+  +VD     + +D K RTVVIEHCKQCQSFKKRAIQVQTGLEN
Sbjct: 137 ---PKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN 196

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Sbjct: 197 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG 248

[Close]

BLAST of Sed0002806 vs. ExPASy Swiss-Prot
Match: Q3UQA7 (Selenoprotein H OS=Mus musculus OX=10090 GN=Selenoh PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 6.2e-06
Identity = 29/87 (33.33%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 91  TVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEI---RSEDGEKFIS 150
           TVVIEHC   + + + A  +   L+   P + V++NP KPRRG FE+   RS++    + 
Sbjct: 29  TVVIEHCTSXRVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEVTLLRSDNSRVELW 88

Query: 151 LLDMKRPFTRMKDLEMEEVISDIVEKL 175
               K P  ++K  E +EV+ ++ + L
Sbjct: 89  TGIKKGPPRKLKFPEPQEVVEELKKYL 115

[Close]

BLAST of Sed0002806 vs. ExPASy Swiss-Prot
Match: Q8IZQ5 (Selenoprotein H OS=Homo sapiens OX=9606 GN=SELENOH PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 8.0e-06
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 84  GEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIR--SED 143
           GE ++  TVVIEHC   + + + A  +   L    P + V++NP KPRRG FE+     D
Sbjct: 28  GEGMEEATVVIEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPD 87

Query: 144 GEKFISLLDMKR-PFTRMKDLEMEEVISDIVEKL 175
           G        +K+ P  ++K  E +EV+ ++ + L
Sbjct: 88  GSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYL 121

[Close]

BLAST of Sed0002806 vs. ExPASy Swiss-Prot
Match: Q4R5Y4 (Selenoprotein H OS=Macaca fascicularis OX=9541 GN=SELENOH PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 7.5e-04
Identity = 36/121 (29.75%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 57  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 116
           + +  E   V AAE +    ++     GE ++  TVVIEHC   + +   A  +   L  
Sbjct: 6   RKRKAEAAMVAAAEKQERLANS-----GEGMEETTVVIEHCTSXRVYGXNAAALSQALRL 65

Query: 117 GVPGITVRLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-PFTRMKDLEMEEVISDIVEK 175
             P + V++NP KPRRG FE+     DG        +K+ P  ++K  E +EV+ ++ + 
Sbjct: 66  EAPELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKY 121

[Close]

BLAST of Sed0002806 vs. ExPASy TrEMBL
Match: A0A6J1GHF7 (selenoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.2e-58
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAP+KR+K QEDE AVAKP PA    TRRSPRLA NSK D   EE       K+ K++K 
Sbjct: 1   MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEE----TVVKLPKRKKA 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
           K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEHCKQCQSFKKRA++VQ GLE 
Sbjct: 61  KRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEK 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Sed0002806 vs. ExPASy TrEMBL
Match: A0A1S3BBW1 (selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 129/180 (71.67%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAPRKR+K+QE+E+A+ KPAPA    TR S RLAANSK D    ELPKSKKAK +     
Sbjct: 1   MAPRKRSKNQEEESAMEKPAPATSRVTRSSARLAANSKADLTVTELPKSKKAKRA----- 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
              P+ENG+VE  EN+  +VD   E   +D K RTVVIEHCKQCQSFKKRAIQVQTGLEN
Sbjct: 61  ---PKENGKVEEVENKEVKVDVGLEKPDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMK+L+M+EVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGKKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG 172

[Close]

BLAST of Sed0002806 vs. ExPASy TrEMBL
Match: A0A0A0LPC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.6e-57
Identity = 129/180 (71.67%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +     
Sbjct: 1   MAPRKRTKNQEEDLVVEKPAPATSRLTRSSARLAANSKADLTVTELPKSKKAKRA----- 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
              P+ENG+VE  EN+  +VD     + +D K RTVVIEHCKQCQSFKKRAIQVQTGLEN
Sbjct: 61  ---PKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG 172

[Close]

BLAST of Sed0002806 vs. ExPASy TrEMBL
Match: A0A6J1KP64 (selenoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.8e-56
Identity = 125/180 (69.44%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKP 60
           MAP+KR+K QEDE A AKP P     TRRSPRLAANSK D   EE       K+ KK+K 
Sbjct: 1   MAPKKRSKIQEDETAAAKPVPVSSRVTRRSPRLAANSKADLTVEE----PVVKLPKKKKA 60

Query: 61  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLEN 120
           K  P+EN + E  ENEGE++DA SE +G + K R VVIEHCKQCQSFKKRA++VQ GLE 
Sbjct: 61  KRAPKENEKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEK 120

Query: 121 GVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG 177
           GVPGITV LNPDK RRGCFEIRSEDGEKFISLLDMKRPFT+MK+L+MEEVISDI+EK+KG
Sbjct: 121 GVPGITVLLNPDKSRRGCFEIRSEDGEKFISLLDMKRPFTQMKELDMEEVISDIIEKIKG 176

[Close]

BLAST of Sed0002806 vs. ExPASy TrEMBL
Match: A0A6J1K9R2 (selenoprotein H-like OS=Cucurbita maxima OX=3661 GN=LOC111492377 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.1e-53
Identity = 126/187 (67.38%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVA---KPAP----ATRRSPRLAANSK----VDSAAEELPKSKKAK 60
           MAPRKR+K+QED+ A A   KPAP     TRRSPRLA NS     V+ A  ELPKSKK K
Sbjct: 1   MAPRKRSKNQEDKPAAAAEEKPAPVSSMVTRRSPRLAVNSMADLVVEEAVTELPKSKKVK 60

Query: 61  VSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQ 120
            +        P+ENG+ +   NEGEE+DA S+ + +D K RTVVIE CKQCQSFKKRAIQ
Sbjct: 61  RA--------PKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQ 120

Query: 121 VQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISD 177
           VQ+GLENGV GITV LNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMK+L MEEVISD
Sbjct: 121 VQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISD 179

[Close]

BLAST of Sed0002806 vs. TAIR 10
Match: AT2G24440.1 (selenium binding )

HSP 1 Score: 138.3 bits (347), Expect = 6.1e-33
Identity = 82/153 (53.59%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 23  TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEM 82
           T+R    +   K++S  ++  K+ KAK     K K K EE   V+  + E E+ DA  + 
Sbjct: 32  TKRDGSSSKLMKIESPEKKKRKTTKAKNVGAAKKKVKKEEVA-VKIEKEEEEDDDAAEKE 91

Query: 83  VGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDG 142
             +D   + +VIEHCKQC+SFK+RA +V+ GLE  VPGI V +NPDKPRRGCFEIR E G
Sbjct: 92  EDDDSDKKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGG 151

Query: 143 EKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK 176
           E FISLL MKRPFT MK+L MEEVI+DIVEK+K
Sbjct: 152 ETFISLLAMKRPFTPMKELNMEEVIADIVEKIK 183

[Close]

BLAST of Sed0002806 vs. TAIR 10
Match: AT4G31360.1 (selenium binding )

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-31
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 1   MAPRKRTKSQEDEAAVAKPA--PATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKP 60
           M  R R+++Q++ A  A  A  PAT+++ R   NS +++         +AK  KK +   
Sbjct: 29  MDSRTRSQTQQNGAKAAGSATKPATKKAKR--KNSAIETG--------RAKKGKKEEEVE 88

Query: 61  KPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGV 120
           +PEE  E E  E E  EV        ED     +VIEHCKQC +FK RAIQV+  LE  V
Sbjct: 89  EPEEAVE-EEVEKEEPEV--------EDPTRTKIVIEHCKQCNAFKTRAIQVKEALEGAV 148

Query: 121 PGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK 176
           PG+TV LNP+KPRRGCFEIR E G+ FISLL+MKRPF  MK L+MEEVI DI++K+K
Sbjct: 149 PGVTVSLNPEKPRRGCFEIREEGGQTFISLLEMKRPFAPMKALDMEEVIEDIIKKVK 186

The following BLAST results are available for this feature:

BLAST of Sed0002806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536837.1	3.0e-58	71.67	selenoprotein H-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950994.1	8.7e-58	71.11	selenoprotein H-like isoform X1 [Cucurbita moschata]	[more]
XP_008445096.1	2.5e-57	71.67	PREDICTED: selenoprotein H [Cucumis melo]	[more]
XP_004138763.1	7.4e-57	71.67	selenoprotein H [Cucumis sativus]	[more]
KAE8652181.1	7.4e-57	71.67	hypothetical protein Csa_022241 [Cucumis sativus]	[more]

BLAST of Sed0002806 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3UQA7	6.2e-06	33.33	Selenoprotein H OS=Mus musculus OX=10090 GN=Selenoh PE=1 SV=2	[more]
Q8IZQ5	8.0e-06	32.98	Selenoprotein H OS=Homo sapiens OX=9606 GN=SELENOH PE=1 SV=2	[more]
Q4R5Y4	7.5e-04	29.75	Selenoprotein H OS=Macaca fascicularis OX=9541 GN=SELENOH PE=2 SV=2	[more]

BLAST of Sed0002806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHF7	4.2e-58	71.11	selenoprotein H-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453972 PE...	[more]
A0A1S3BBW1	1.2e-57	71.67	selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1	[more]
A0A0A0LPC9	3.6e-57	71.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1	[more]
A0A6J1KP64	8.8e-56	69.44	selenoprotein H-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496337 PE=4...	[more]
A0A6J1K9R2	1.1e-53	67.38	selenoprotein H-like OS=Cucurbita maxima OX=3661 GN=LOC111492377 PE=4 SV=1	[more]

BLAST of Sed0002806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24440.1	6.1e-33	53.59	selenium binding	[more]
AT4G31360.1	9.7e-31	49.15	selenium binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 88..163 e-value: 1.5E-6 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	PANTHER	PTHR33638	SELENOPROTEIN H	coord: 1..175
IPR011893	Selenoprotein, Rdx-type	TIGRFAM	TIGR02174	TIGR02174	coord: 92..142 e-value: 1.7E-9 score: 35.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002806.1	Sed0002806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus