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Sed0002746 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAAGGTCTTTTGAAGACTGTGTTTGCTTTAAAGGCTACAGTTGGATTGGAAGCTTTTGTGGAGGCAGTGGGAATTGGTAAAGGGAAGCAAGATCTTACTGGTGTTTCGATGGATCCTTTAAAATCGAACCACGTTGCTTCTCCCTGCCCCGAGATACTTATTGGAAAAGCATGTCCCCCGGAAATTGTCAACTATCTAATAGGAGGTTTGAGATTGAGCAAAGCCCGATTGGGCGATCTCTTTTGGGAAGTTGTTTGGCCTCGTTTGCTTGCTCGAGGGTGGTATTCCGAGCAGCCAAATAGTCGTTGTACCACCAGTACAAGGCATTCATTGGTCTTTCTTGTCTCGGGTATCAAAAAGTTTTCAAGGAGAAAGCTGGTAAGGGGAAATCACTATTTTGATTCAATCAGCGACGTCCTTGTTAAAGTTGCTTCGGATCCAGGACTACTTAATTTTTTTAGATTCAACGACATCCTTGTGAAATTGAGGCTATTGTGA ATGGCAAAAGGTCTTTTGAAGACTGTGTTTGCTTTAAAGGCTACAGTTGGATTGGAAGCTTTTGTGGAGGCAGTGGGAATTGGTAAAGGGAAGCAAGATCTTACTGGTGTTTCGATGGATCCTTTAAAATCGAACCACGTTGCTTCTCCCTGCCCCGAGATACTTATTGGAAAAGCATGTCCCCCGGAAATTGTCAACTATCTAATAGGAGGTTTGAGATTGAGCAAAGCCCGATTGGGCGATCTCTTTTGGGAAGTTGTTTGGCCTCGTTTGCTTGCTCGAGGGTGGTATTCCGAGCAGCCAAATAGTCGTTGTACCACCAGTACAAGGCATTCATTGGTCTTTCTTGTCTCGGGTATCAAAAAGTTTTCAAGGAGAAAGCTGGTAAGGGGAAATCACTATTTTGATTCAATCAGCGACGTCCTTGTTAAAGTTGCTTCGGATCCAGGACTACTTAATTTTTTTAGATTCAACGACATCCTTGTGAAATTGAGGCTATTGTGA ATGGCAAAAGGTCTTTTGAAGACTGTGTTTGCTTTAAAGGCTACAGTTGGATTGGAAGCTTTTGTGGAGGCAGTGGGAATTGGTAAAGGGAAGCAAGATCTTACTGGTGTTTCGATGGATCCTTTAAAATCGAACCACGTTGCTTCTCCCTGCCCCGAGATACTTATTGGAAAAGCATGTCCCCCGGAAATTGTCAACTATCTAATAGGAGGTTTGAGATTGAGCAAAGCCCGATTGGGCGATCTCTTTTGGGAAGTTGTTTGGCCTCGTTTGCTTGCTCGAGGGTGGTATTCCGAGCAGCCAAATAGTCGTTGTACCACCAGTACAAGGCATTCATTGGTCTTTCTTGTCTCGGGTATCAAAAAGTTTTCAAGGAGAAAGCTGGTAAGGGGAAATCACTATTTTGATTCAATCAGCGACGTCCTTGTTAAAGTTGCTTCGGATCCAGGACTACTTAATTTTTTTAGATTCAACGACATCCTTGTGAAATTGAGGCTATTGTGA MAKGLLKTVFALKATVGLEAFVEAVGIGKGKQDLTGVSMDPLKSNHVASPCPEILIGKACPPEIVNYLIGGLRLSKARLGDLFWEVVWPRLLARGWYSEQPNSRCTTSTRHSLVFLVSGIKKFSRRKLVRGNHYFDSISDVLVKVASDPGLLNFFRFNDILVKLRLL Homology
BLAST of Sed0002746 vs. NCBI nr
Match: XP_022138563.1 (uncharacterized protein LOC111009693 [Momordica charantia]) HSP 1 Score: 241.5 bits (615), Expect = 5.2e-60 Identity = 120/148 (81.08%), Postives = 128/148 (86.49%), Query Frame = 0
BLAST of Sed0002746 vs. NCBI nr
Match: XP_038875273.1 (uncharacterized protein LOC120067768 isoform X1 [Benincasa hispida]) HSP 1 Score: 234.2 bits (596), Expect = 8.3e-58 Identity = 118/148 (79.73%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Sed0002746 vs. NCBI nr
Match: XP_038875274.1 (uncharacterized protein LOC120067768 isoform X2 [Benincasa hispida]) HSP 1 Score: 234.2 bits (596), Expect = 8.3e-58 Identity = 118/148 (79.73%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Sed0002746 vs. NCBI nr
Match: XP_023000289.1 (uncharacterized protein LOC111494564 [Cucurbita maxima]) HSP 1 Score: 232.6 bits (592), Expect = 2.4e-57 Identity = 119/148 (80.41%), Postives = 125/148 (84.46%), Query Frame = 0
BLAST of Sed0002746 vs. NCBI nr
Match: XP_023521382.1 (uncharacterized protein LOC111785153 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 230.3 bits (586), Expect = 1.2e-56 Identity = 118/148 (79.73%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Sed0002746 vs. ExPASy TrEMBL
Match: A0A6J1CDC4 (uncharacterized protein LOC111009693 OS=Momordica charantia OX=3673 GN=LOC111009693 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60 Identity = 120/148 (81.08%), Postives = 128/148 (86.49%), Query Frame = 0
BLAST of Sed0002746 vs. ExPASy TrEMBL
Match: A0A6J1KJH6 (uncharacterized protein LOC111494564 OS=Cucurbita maxima OX=3661 GN=LOC111494564 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57 Identity = 119/148 (80.41%), Postives = 125/148 (84.46%), Query Frame = 0
BLAST of Sed0002746 vs. ExPASy TrEMBL
Match: A0A6J1H4M2 (uncharacterized protein LOC111460436 OS=Cucurbita moschata OX=3662 GN=LOC111460436 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56 Identity = 117/148 (79.05%), Postives = 122/148 (82.43%), Query Frame = 0
BLAST of Sed0002746 vs. ExPASy TrEMBL
Match: A0A6J1ER55 (uncharacterized protein LOC111436952 OS=Cucurbita moschata OX=3662 GN=LOC111436952 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56 Identity = 117/148 (79.05%), Postives = 124/148 (83.78%), Query Frame = 0
BLAST of Sed0002746 vs. ExPASy TrEMBL
Match: A0A0A0KBV6 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G197210 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55 Identity = 116/148 (78.38%), Postives = 122/148 (82.43%), Query Frame = 0
BLAST of Sed0002746 vs. TAIR 10
Match: AT2G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 628 Blast hits to 543 proteins in 149 species: Archae - 0; Bacteria - 106; Metazoa - 145; Fungi - 69; Plants - 97; Viruses - 10; Other Eukaryotes - 201 (source: NCBI BLink). ) HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39 Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 0
BLAST of Sed0002746 vs. TAIR 10
Match: AT2G47820.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1). ) HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39 Identity = 80/145 (55.17%), Postives = 100/145 (68.97%), Query Frame = 0
BLAST of Sed0002746 vs. TAIR 10
Match: AT1G09040.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 614 Blast hits to 567 proteins in 104 species: Archae - 2; Bacteria - 12; Metazoa - 344; Fungi - 31; Plants - 81; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). ) HSP 1 Score: 142.5 bits (358), Expect = 3.0e-34 Identity = 75/155 (48.39%), Postives = 100/155 (64.52%), Query Frame = 0
BLAST of Sed0002746 vs. TAIR 10
Match: AT1G09050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 552 Blast hits to 499 proteins in 115 species: Archae - 0; Bacteria - 86; Metazoa - 259; Fungi - 14; Plants - 77; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). ) HSP 1 Score: 141.0 bits (354), Expect = 8.9e-34 Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 0
BLAST of Sed0002746 vs. TAIR 10
Match: AT1G55050.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 2440 Blast hits to 1999 proteins in 271 species: Archae - 0; Bacteria - 138; Metazoa - 960; Fungi - 166; Plants - 162; Viruses - 14; Other Eukaryotes - 1000 (source: NCBI BLink). ) HSP 1 Score: 139.0 bits (349), Expect = 3.4e-33 Identity = 75/155 (48.39%), Postives = 97/155 (62.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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