Sed0002655 (gene) Chayote v1

Overview
NameSed0002655
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S20
LocationLG05: 4188200 .. 4190778 (-)
RNA-Seq ExpressionSed0002655
SyntenySed0002655
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCCAAAACCGAAACGTTCAATTTCGGCCCGATGTATTAGAAATCGGGCCGCCAGTCCATTGATATTAATTCGGAAACCCTAGCTTCTCATTCTTCGACCCAAAATCCCTGAAAACCCTAGCAGCTGTTGAGTGCATTTTGCAGTTTGCACCGGTAATCATCTCCCACTAATCTCATCGTTCATGGTTTCTGCTCTTAATTTCTCACATCTGATTCCCAGAGTGTTATGGATTTTCTTCTTTTCAGGAAGTAAAAGCAAACATGGCGTATGCAGCGATGAAGCCCACGAAGCCTGGTTTGGAGGACGCACAGGAACAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTGAAGAATCTTGAAAAGGGTAACATATAATTTTGCATATCGGTTATTGTTCAGTGTTCAAGTTGATTTGGGGTTTTTTTTTTCTTTTTGCTTATAATATTGCATTGTTTTGTGTTTCTGAAATATGTAGATTTCTTGTTTACGTTTGTGCAGTTGTGATTTTTGTAGTTGTTTGTTATTCGTTTTGATTTATATTGTGATGTTTATTGAGAATTGTTGTTTGTTTTGTGGCGTTCGATATTTATCTGCGAAATGAATTTTGAATGCCTTTCCTGGAAGAGTTATGCTTGAATCTAAAATGGGGTCGAGCCTCTTGGGATATTTGACTTAACTCATTTTGAGATTTTTCGCTCTAGTTTCAAGTTTGGATTTTTACTTTGGAAATTGTAATCCATGTGCTTTTCTCACAAAGTGATTATGAATGTAGTCAAATTCTAAAGTATTTACCTTGATAGTCATTGATATGTTTTGATATGGATGCGTATACTTTCTTATAAATTTCCAATATTATAAGAATGTATGTGACTATATTCAATAATTTCAAGACTACATTTGCTAATTTTATTTTTGTAAGCGACCGTTTATGTAACTATTTTCTAAATTTGATTAGTGTTGTAAGTTTCCCTCTTTTTATTTCTTGGCGTGTTTAGCTTTGCAAATGTTATTGCAATTCTCATGGTTCACTTCCTGTATCGGTGATGAACAGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGACCAGTGAGGATGCCGACAAAAGTTCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACTGACGAATCAATGGTTAACATCAGAATTACATTAATGATGGCGTGCGTTTTTTTTCGAATTTTGAAGTCCACTTCATTCAGAAAATTGTGTTTTTTGTGTAGTTTTTATATTTTCTTCCATAATTTAGAACCTTCTGCCTTTTTGTTACCCTGGATCAAGCTTTTAAATGTACCTTTTTTATAACATGGTTCTTTTCCCTCTATTTAGTTGCTCCTGGGGTTGGCATTAACAATGCTAGTTACATTTCCAGCATCATCATATTTAGAGTTTCACAGCTTATTTTAGTGTGGCTATCCTGTTTTATCTTTCTCATCCTTCCATTTATATCCTTAGATGTCCAATATCCCCATACCATGACTGTGCTATATGAATTCGCCTTTCACTGTTGACACAATCATTATTGACATTGCAATTGTAGAAAACAAGCCAGAAATCTATGATTTTAACAAGTTTCCCATAAACTTAAGCATTTATCGGAATTCTGCTTTACGAGAAGTATTTGGTGACTGCTACCTTGAATAATGTTTCCAATTTTTCTTATTAGTCATGAGTTGATATAAGTTGCCATATTCGTGGCCAAGCTGAGTGATCCTTTAGAACCAGCCCGAGATTTGGTTGCTAATCGTTTATTTGTTTCAGGTACCAACACATTTGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCGGCCGATGTTGTTAAGCAGATCACATCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGACTGATGTGTTCCTGTATCTGAAATGCTTTAATCCACTCTTAGTTATTTAGAGTTCTATGTACTCTGCGTGCCGCCTGCCTTGTTTTAATCTCAAATTGTTAAGATTAGTGCGTTATCCATTTTTGTCATAATTTTGAAGTTTTATAACCTATTTTGAAAAGGAATTTTTTTGTTTACTTTTATTTTGTTGATATCTTTGGCTTTGTTACTTTTGAAAAGTTGAGTATTTCTATGTGCTGCATTAGGGTTTGTGTTTCAGTATGGCAGTCTCACTTGGCAAACTGTTTGATATTACCAACATTTTGGTTGTCAAACACAGGAAAATAATTGTATAGGTAGGTGGCTTTGTGGTTTTTATTAGACTTTCCTAACTTACCTATCTTTTATGCTTTTTAATGGATCATGTTTTTCCATAATTTTCATTTTACCCACATATGCATCTCATCTCAGGTATTTGTAATCTCCCTTCTCCCAACCTGTTTTAAAACATATGCATCCCATATGTTATCCCTAAGAAAGCAAAAAACATAGGGGATGAGATTTGAGGGTATATTCTGGTTGATGTTTTAAGTGTGTGGACCCACTTGTAATATTATGATTTTAATTTGTAGACATCTCTTAA

mRNA sequence

ATTATCCAAAACCGAAACGTTCAATTTCGGCCCGATGTATTAGAAATCGGGCCGCCAGTCCATTGATATTAATTCGGAAACCCTAGCTTCTCATTCTTCGACCCAAAATCCCTGAAAACCCTAGCAGCTGTTGAGTGCATTTTGCAGTTTGCACCGGAAGTAAAAGCAAACATGGCGTATGCAGCGATGAAGCCCACGAAGCCTGGTTTGGAGGACGCACAGGAACAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTGAAGAATCTTGAAAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGACCAGTGAGGATGCCGACAAAAGTTCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATTTGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCGGCCGATGTTGTTAAGCAGATCACATCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGACTGATGTGTTCCTGTATCTGAAATGCTTTAATCCACTCTTAGTTATTTAGAGTTCTATGTACTCTGCGTGCCGCCTGCCTTGTTTTAATCTCAAATTGTTAAGATTAGTGCGTTATCCATTTTTGTCATAATTTTGAAGTTTTATAACCTATTTTGAAAAGGAATTTTTTTGTTTACTTTTATTTTGTTGATATCTTTGGCTTTGTTACTTTTGAAAAGTTGAGTATTTCTATGTGCTGCATTAGGGTTTGTGTTTCAGTATGGCAGTCTCACTTGGCAAACTGTTTGATATTACCAACATTTTGGTTGTCAAACACAGGAAAATAATTGTATAGGTAGGTGGCTTTGTGGTTTTTATTAGACTTTCCTAACTTACCTATCTTTTATGCTTTTTAATGGATCATGTTTTTCCATAATTTTCATTTTACCCACATATGCATCTCATCTCAGGTATTTGTAATCTCCCTTCTCCCAACCTGTTTTAAAACATATGCATCCCATATGTTATCCCTAAGAAAGCAAAAAACATAGGGGATGAGATTTGAGGGTATATTCTGGTTGATGTTTTAAGTGTGTGGACCCACTTGTAATATTATGATTTTAATTTGTAGACATCTCTTAA

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCCACGAAGCCTGGTTTGGAGGACGCACAGGAACAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTGAAGAATCTTGAAAAGGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGACCAGTGAGGATGCCGACAAAAGTTCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACCAACACATTTGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATTGACCTCTTTAGCTCGGCCGATGTTGTTAAGCAGATCACATCTATCACCATTGAACCAGGTGTTGAGGTCGAAGTCACAATTGCAGACTGA

Protein sequence

MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD
Homology
[Close]
BLAST of Sed0002655 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_038906766.1 40S ribosomal protein S20-2 [Benincasa hispida] >XP_038906767.1 40S ribosomal protein S20-2 [Benincasa hispida] >KAA0055131.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa] >TYK20728.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 4.6e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. NCBI nr
Match: KAG6600158.1 (Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.6 bits (597), Expect = 4.6e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 229 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 288

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 289 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 348

Query: 121 D 122
           D
Sbjct: 349 D 349

[Close]
BLAST of Sed0002655 vs. NCBI nr
Match: XP_004143650.1 (40S ribosomal protein S20-2 [Cucumis sativus] >KGN50383.1 hypothetical protein Csa_000118 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL+ITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. NCBI nr
Match: XP_022929156.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >KAG7035584.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037622.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-49
Identity = 101/122 (82.79%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 1   MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNT+DRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

[Close]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 79/107 (73.83%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 15  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-40
Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 5   AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match: A0A1S4E624 (40S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.6e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match: A0A5D3DB09 (40S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001300 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.6e-59
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0002655 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Sed0002655 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of Sed0002655 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008467267.11.6e-5899.17PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:... [more]
XP_008439109.14.6e-5898.35PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r... [more]
KAG6600158.14.6e-5898.35Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_004143650.11.0e-5798.3540S ribosomal protein S20-2 [Cucumis sativus] >KGN50383.1 hypothetical protein C... [more]
XP_022929156.11.3e-5798.3540S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal p... [more]
BLAST of Sed0002655 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY61.4e-5490.9140S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492001.2e-5390.0040S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356869.0e-4982.7940S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234031.2e-4073.8340S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH81.5e-4069.2340S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of Sed0002655 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E6247.6e-5999.1740S ribosomal protein S20-2 OS=Cucumis melo OX=3656 GN=LOC103504663 PE=3 SV=1[more]
A0A5D3DB097.6e-5999.1740S ribosomal protein S20-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VKH92.2e-5898.3540S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1IAH12.2e-5898.3540S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=... [more]
A0A6J1FSX52.2e-5898.3540S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P... [more]
BLAST of Sed0002655 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.21.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G47370.11.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G47370.31.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G45030.18.6e-5590.00Ribosomal protein S10p/S20e family protein [more]
AT5G62300.18.6e-5590.00Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 22..35
score: 44.51
coord: 57..72
score: 42.43
coord: 79..93
score: 51.41
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18.290716
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
e-value: 1.2E-37
score: 141.1
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
e-value: 5.3E-27
score: 93.9
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 7..121
e-value: 6.8E-48
score: 163.5
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 22..119
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 21..119
e-value: 5.7E-40
score: 133.7
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 1..121
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002655.1Sed0002655.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome