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Sed0002565 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGAGGCGAAAGAAATTTTGAAAGATAATAGAATTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCGGAACTTGTAAGTTCATCAGGAACCATGCTTCCTATTGCGATTTTTTTTTTTTTTTTTTTGTATTAGTCAAGAACTCATTGTATGGTTCAATCTTTCCTTACTAATATCGAGCATTCTTCTTTTGGCTGTTTATCTTTTACAAAATTTTGATAACAATGGAAAGTGATCTGTTTTAGGATTTTCATGTTCTGTTTAACTCAAAAATACATTCAATATAACCATCATGGGGTGACTCAGTTGGTCGAAGAGGGCCTTGGGGTGCATAAGGTGATGGGTTCAATTCCCTGGTGGCCACCTTCCTAGGAATTAATTTCCTATAAGTTTTCTTGGCATCCAAATGTTATAGGGTCAGACGGGATTCCCCGTGACAATTTGACAATAGTCGAGGTGCGTGTAAGCTGGCCCGGACAGTCACGGATATCAAAATAGAAATACATTCAATATGAGCTGTGTGGCATGCTCATTGTCTCTGTATATGATGTATGTGGCAGGACATGCTGATTAGCATTAAGATGATAGTTCTCCAACGTGCAAAAGTTATTGGCCATGAAGAACTAGCTGAGAAATTTAATCTGAAGATGCTTCGTGCTATAGGTATTTCTGCTTTCTGTTTTGCATTTCTTCTATTTCTGCTTTCTGCCATATAATTATTATGTGTGGATTTAGCATGCTTGGTTAGTGTTTGATGTGTTCAACAAATGTTGGAGTGTGTAAGTGTCCAAAATATTAGAGGTGTCGATGTTCATATATTTCTCGAAAATCGATTCGACCAATCGAAACCAACCGAATAGAGGGTGGTTGGTCATTTTTCGAGTATGTGTTGGTCGGTATCAGTTAGAAAAAGTTTTAATTGAAAATTTATCCGTTAATTCTTTCGGTTTGATTAACGGACTTTATAAAATATTAATATTTTTCATATAATTAATTAGATTTCTTATTAAATTATTGCAAAATTAGCTTAATTTTAAATGTGTTTCCAAAAATTATTCAAGATGCTCAAAATTTTGAAATTAATTCTTAAAATTTTATTAAAAAATTATTTGATGAATATGCTTTTTTTAAAAAAACTTAAATAAAATGAATAAACCGACTTAACCGACTAGTCGGTTTGGTCTTATTTTTAAGCCAACCGATAGGGTTGGTTCGGTGTGAATTTTCACCGACTGATGAACACCCCTACAAAATATGGTTGACAAGTAGACGTTTTTTGAACTAAAGTGTTCTGTGTTTCTTAGTCCCGACTTATAATATCATTGTCTAGAATGCGTGTGTAATCTCTCTTCCTCTCTCTAGCATGAGTTAGCTTACAGCCGCGTTGGTTTATTTGTGCTATCTACCATTTTAGTTGCTGAAAAAATTGTGTTTCTGGCGTTTTGTATGTAGGGTTTGTATTGATGGAGCATCTTAAGGGACAACTGAGGGCGGGTGTTTCAGATCAATCTCAATCTGCTGCCTTAAATGGGAGCAACTTTTTGGACAGCAGTCTTGATAAAATTTTGTCAATTGACGAGATAATGGCGATGATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGTTTGTACAAACTACTAGTACCTGTTCTTGTGTTGGCTAGACAACGTCATTGGCGAGCATAGCAAGACCTCGTATAATATGTTGTTTCCATATAAACTTACCTCTAGTAGTTAAGAGGGGATGGGTTCAATCCATTGTGTCTACCTAGCTAGGAATTAATTTCCTACCGGTTTCCGAAACCATCCAAATATTTTAGGATTCCGTGATAATAGTTACTTGGTATTGATTCATTAGTTGTTAGTTTTTTTTTAAACAAGGGTAACCACACCCGTCCCTAAGCTAGACATCTGGAGACATCGAAGGAGTAATGTCACAGGTAGGAAGCATTCCTTCAAAGCCCAAGTCTTCAAACCACTGTGCCACCCCTTGGGAACGATTCATTAGATGTTAGTAAATCATTTAGATAACCTCTTCCTAATATTTTTTCCTTGAACTTTAGAATGGATGTTCATGTCATTAATTTTTCATTCTCTGATTAGAGCTGGTTTCTTTCCACTCAGTTTCTGAATTACAGCATTCGATAGGCATACATTTTTTCCGTTTCTTTAATATTTCTCTGTTTACTAATTTAAATAAAATGATATCATTCTTTTCTGTCATACTGAGTTTTTTTTTATTTTTTATCAAGTGAATGAAAGGGAAAACTAAAACTTTTTGGCAACTACATTTACCTTCTGATTTTCATAAAACCATTTATATTAACTTTCATGGTAGACACCTACTTGGAGTTAATTTCTTACGAATTATCTTGTCAACCAAAATCTCATAGAATAGTACGTCATTCAAATGTTGTACCTCTAACTCTTTGATCTAATGCTGAGTTGTTTTTTTAAAGATGTATATGCTTTTTCAACAGAATTCTGATGTTCTAAAACTTGGTGCTGGTTCCTCAATTTGTAATGCCAACTTTTTAACTCCTCTCTCCTTTTTCTAGGCCGCGGGAGAAGGTTGATTCAAGACCGAAGAACGAGTTGTGA ATGGAAGAGGCGAAAGAAATTTTGAAAGATAATAGAATTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCGGAACTTGACATGCTGATTAGCATTAAGATGATAGTTCTCCAACGTGCAAAAGTTATTGGCCATGAAGAACTAGCTGAGAAATTTAATCTGAAGATGCTTCGTGCTATAGGGTTTGTATTGATGGAGCATCTTAAGGGACAACTGAGGGCGGGTGTTTCAGATCAATCTCAATCTGCTGCCTTAAATGGGAGCAACTTTTTGGACAGCAGTCTTGATAAAATTTTGTCAATTGACGAGATAATGGCGATGATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGCCGCGGGAGAAGGTTGATTCAAGACCGAAGAACGAGTTGTGA ATGGAAGAGGCGAAAGAAATTTTGAAAGATAATAGAATTGAAGATATCAGTTGGCTTTGTTCACTATCTGAATCGGAACTTGACATGCTGATTAGCATTAAGATGATAGTTCTCCAACGTGCAAAAGTTATTGGCCATGAAGAACTAGCTGAGAAATTTAATCTGAAGATGCTTCGTGCTATAGGGTTTGTATTGATGGAGCATCTTAAGGGACAACTGAGGGCGGGTGTTTCAGATCAATCTCAATCTGCTGCCTTAAATGGGAGCAACTTTTTGGACAGCAGTCTTGATAAAATTTTGTCAATTGACGAGATAATGGCGATGATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGCCGCGGGAGAAGGTTGATTCAAGACCGAAGAACGAGTTGTGA MEEAKEILKDNRIEDISWLCSLSESELDMLISIKMIVLQRAKVIGHEELAEKFNLKMLRAIGFVLMEHLKGQLRAGVSDQSQSAALNGSNFLDSSLDKILSIDEIMAMICSERRKKPGKRPREKVDSRPKNEL Homology
BLAST of Sed0002565 vs. NCBI nr
Match: XP_022156102.1 (uncharacterized protein LOC111023068 [Momordica charantia]) HSP 1 Score: 211.8 bits (538), Expect = 3.5e-51 Identity = 113/133 (84.96%), Postives = 121/133 (90.98%), Query Frame = 0
BLAST of Sed0002565 vs. NCBI nr
Match: XP_023533769.1 (uncharacterized protein LOC111795522 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 210.7 bits (535), Expect = 7.8e-51 Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0
BLAST of Sed0002565 vs. NCBI nr
Match: KAG6606306.1 (hypothetical protein SDJN03_03623, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50 Identity = 111/134 (82.84%), Postives = 122/134 (91.04%), Query Frame = 0
BLAST of Sed0002565 vs. NCBI nr
Match: XP_022931147.1 (uncharacterized protein LOC111437414 [Cucurbita moschata] >XP_022931148.1 uncharacterized protein LOC111437414 [Cucurbita moschata]) HSP 1 Score: 208.4 bits (529), Expect = 3.9e-50 Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 0
BLAST of Sed0002565 vs. NCBI nr
Match: XP_022995750.1 (uncharacterized protein LOC111491189 [Cucurbita maxima] >XP_022995751.1 uncharacterized protein LOC111491189 [Cucurbita maxima]) HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49 Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0
BLAST of Sed0002565 vs. ExPASy TrEMBL
Match: A0A6J1DR49 (uncharacterized protein LOC111023068 OS=Momordica charantia OX=3673 GN=LOC111023068 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51 Identity = 113/133 (84.96%), Postives = 121/133 (90.98%), Query Frame = 0
BLAST of Sed0002565 vs. ExPASy TrEMBL
Match: A0A6J1ESQ9 (uncharacterized protein LOC111437414 OS=Cucurbita moschata OX=3662 GN=LOC111437414 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50 Identity = 111/134 (82.84%), Postives = 121/134 (90.30%), Query Frame = 0
BLAST of Sed0002565 vs. ExPASy TrEMBL
Match: A0A6J1K2S6 (uncharacterized protein LOC111491189 OS=Cucurbita maxima OX=3661 GN=LOC111491189 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 7.1e-50 Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0
BLAST of Sed0002565 vs. ExPASy TrEMBL
Match: A0A0A0KW48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166940 PE=3 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 9.0e-45 Identity = 105/131 (80.15%), Postives = 116/131 (88.55%), Query Frame = 0
BLAST of Sed0002565 vs. ExPASy TrEMBL
Match: A0A1S3BQH9 (uncharacterized protein LOC103492413 OS=Cucumis melo OX=3656 GN=LOC103492413 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44 Identity = 100/124 (80.65%), Postives = 112/124 (90.32%), Query Frame = 0
BLAST of Sed0002565 vs. TAIR 10
Match: AT1G80245.1 (Spc97 / Spc98 family of spindle pole body (SBP) component ) HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25 Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 0
BLAST of Sed0002565 vs. TAIR 10
Match: AT1G80245.2 (Spc97 / Spc98 family of spindle pole body (SBP) component ) HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25 Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 0
BLAST of Sed0002565 vs. TAIR 10
Match: AT1G80245.3 (Spc97 / Spc98 family of spindle pole body (SBP) component ) HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25 Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 0
BLAST of Sed0002565 vs. TAIR 10
Match: AT4G00695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22 Identity = 59/128 (46.09%), Postives = 91/128 (71.09%), Query Frame = 0
BLAST of Sed0002565 vs. TAIR 10
Match: AT4G00695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22 Identity = 59/128 (46.09%), Postives = 91/128 (71.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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