Sed0002517 (gene) Chayote v1

Overview


Name	Sed0002517
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transpos_assoc domain-containing protein
Location	LG03: 12541835 .. 12545623 (+)
RNA-Seq Expression	Sed0002517
Synteny	Sed0002517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGACAAAGCTTGGGTGCATTTAAATCGGTATGATGATAATAGTAAATTATTTATTGGTTTTTAAAGTAATCTCTTGAAGTATACATAACAAAATCACTATGTTCAATAGTGCTACTGATGAATACATGGAAGGAGCGAGGAATTTTCTACAAGAAGTAAAGAAAAGGAAGCCAAATGCCAATAAAATGTTATGTCCGTGTAAGGATTGTAGAAATATGAAACATTTTGATCTTCAAATCATACACGAGCACTTGGTCATCAAGGGAATGGACCCTACATACAATCTTTGGTATCATCATGGAGAAGTATGTGAGGAAGATGAAGTCGAAAATGAAGTTGATGATACTTTTATGTTTGAAGCAACCAACATCTTTAAGACCATGTATATGGGAGAAGAGGAAAATATGGATCATTTTACTTCAAAAAAGAGCAATAAATTTTCTCATAAAGTCCAGGAGGCAAATACTCCATTGTATGCAAGATGCACAAAATATACGAAGATGTCAGCAACGGTAGCATTATACAAACTTAAAACTTTTAATGGTTGGTCAGATACAAGTTTTAGTAGTCTTTTAGAGCTCTTATATGGCATGCTCCCAGTAGATAATGTCATTCCAAGATCTACTTATGAAGTTAGAAAGTTATTCAAGGAATTTGATTTAGGCTACAAAAAAATTCATGCATGTGTTAAGGACTGTTGCCTTTTTAGAAATGAGAATGAAAAGTTAGAAAGTTGTCCTCACTGTTCAACTTCAAGATGGATGATTGATCGACGAACGAATCAAGTCAAACAAGGTGTACCTGCTAAGGTATTGCGATATTTTCCTATCATTCCACGACTTAAAAGAATGTTCAAAATAGATGAACTTGGTGAAAATTTACGTTGGCATTCTAATCATAAAAGTACCGATGGAAAGATTCGACATCCAGTTGATTCTGTTGCATGGGAGTCAATTGATCAAAAGTGGCCCGACTTTTCTATGGACTCTCGTAATCTAAGGTTAGGCCTTGCTACAGATGGTTTTAATCCATTCTCCAACTTGAGTAGTCGATATAGTTGTTGGCCAGTAATGCTTGTGACTTATAACTTTCCTCCTTGGTTATGTATGAAAAGGGAAAATATCATGTTAACTTTGTTGATTCCTGGCCCAAAACAACCTGGAAATGACATTGATGTCTACTTACAACCTCTTATGGAAGATTTACAACAATTATGGAAAGGAGTAAAAGTATATGATGTTGTAAGTGACTCACATTTCAATTTAAGAGCAATTCTTATGTGGACTATAAATGATTTTCCAGCATATGGAAATCTTGCTGGATGCACCACAAAAGGTAAATATGCATGTCCAATTTGTGGAGATAATACTCGTTCTTCTTGGTTAAAATATAGCAAAAAATTTGCATATATGGGTCATAGACGATTCTTATCAAGGCCTCACCCATATCGGAGAAAAAAAGCATGGTTTGATGGTAAAATAGAAGAAGAGTTACCACCCAAAATTGCAACAAGTAGTGCAATTTTTGCCGAACTTGAAGATTTTGAAAATTGTTGGGGAAAAAGTGAAAATAGAAGAAGCAAAAGTAATAAAGAAGAGTCACATAAAAGGTGGAAAAAACGATCAATCTTCTTCGATCTACCCTATTGGAAGGTTCTCAATCTCAAATTTTATGGTGTATTTGTTAAGTTTTAAACTATTTCATTAACTATTTGAAACTTTTATTGTGTAGGAATTACCAGTACGTCATAACTTGGATGTAATGCATATAGAAAAGAATGTATGTGAGAGTATTTTAGGTACATTATTAGATATAAATGGAAAGTCAAAAGATGGAATCAACTCAAGAAAAGATTTACAACTTATGAAAATTCGTTTTGACCTACATCCTCAAGAGCGTGGAGGTCGAACTTACTTACCTCCTGCACCACACACATTATCAAAATCTGAGAAGAAATTACTTTGTTCAAGGTTGTACAAGCTAAAATTGCCTGATGGATACAGTTCAAACATCTCAAAGTGTGTATCATTAGATGACTGCAAAGTGATGGGGTTGAAATCGCATGATTGTCATGTGCTGATGCAACAACTTTTATCTGTGGTGCTTAGAGGTCTGCTTCCAAAAGGTTCAAGACATGCAATATATAAGTTATGTTCATTTTTCAATAGACTTTGTCAACGTATAATTGATAGAGAAGTTATGTTAGAGCTTGAAAAAGAAGCTGTGGACATTTTATGTCTTCTAGAAAGGTACTTTCCTCCTTCATTTTTTGATATCATGATACATTTGGTTATTCATTTGGGTCGTGAAGCTCGTATATGTGGACCTGTTCAATTTCGTTGGATGTACCCATTTGAAAGGTAAATGATTTTCTTTAGAGATATATTGGTGTTAATTATTGTCATTTGGGTAGTCATTATATTTAATTTAGATATATGAAGGTATTGAAAGGTTATGTACGGAACAAAGCAAGACCAGAAGGATGTATTGCAGCATGCTACTTAGCTGATGAATGTGTTGACTTTTCAAATAAGTATTTTAAGCAATCAGCAGAAATAGCAAATAATCAACAACGTAATGAAGAATATCACAATGATGTCATACTAGAGGGTCGTCCCATATCTTCAGGAACTTCAGTTACTTTGCCTGAAGATGTACTTGAGAATGCGCATCGATATGTCTTACTTAACACAGCAGAGGTGGAACCATTTATCGAGTAAGTTAGTTAATGTATCAACATTACATAGTTTTATACAAGACCATTATTTAATGGTAATTTATTTGGTTAGGTTGCATATGAATGAACTTATGCTTTCAAATAAAAAGCTAGCAAAAGATGCTAGTCTACTTTGGAAGATTCATGCAGAACAATTTCCATCATGGTTGAAATCTAAGGTAATATATTATACTATTTCGTAAACGTTCTATCAAACAATGTAAAACTATAACACACTATTCTTGACAAATGAATATTTTTTTATTAACAGATTGAATTAGATTCATCTTCTGAAAATTTTTCTGACTTGTTAAAATGGCTTGCAAATGGGCCAAGAAAAACTGCAATGTCTTATACTGGATATATCATAAATGGACAACGATTTCACATAAAGAGTTTACAAAGATCAACCCAAAATAGTGGTGTTTCTGTAGATGCAACTACATTATGTAGATCAAGTGCCAAAGATAGATCTCAAGTTGTCAACCTAGTTGCTTATTATGGAGTGTTACAAGAAATAATCTTGTTAGATTATTATATCTACCAACTTCCAATCTTTAAATGTGATTGGGCAAATGTCCGTAATGGAGTAAGGGTTGAAGAAGGATTCACTCTTGTTAACTTGCATCAAAGCCAAAGTATATTTATGCGAGAACCTTTCATATTTGCTTCACAAGCAAAACAAGTGTTTTATGTTAGAGAACATGACACCTCAAATTGGTATGTCTTACTAAAAGCACCGCCAAGAGGAGTTCATGACTTAGATATGTACGATGAAAATTGCAGTGATAGTATGGTTGATAATGAACCAATTCTTAATATGTTTGAAGAGATTGATGAAAATGATGAGCTTACTTATGCAAGACAAGATTGTGAGGGTATTTTAATTTGAGGAACAATTTGAGACATTGTCTGAATGTTTCTTTGATGAATATTAATGCTAGTCTATTATAACTATTTTTGTAACTCTTTAGCCATATGTGTATTATAGAGGTTTACATATCTATCATGTTTCAGATCATATCTTCTAAGTATACTTCATTCGATAAACCTCTTCTACAATGGTGA

mRNA sequence

ATGTTTGACAAAGCTTGGGTGCATTTAAATCGTGCTACTGATGAATACATGGAAGGAGCGAGGAATTTTCTACAAGAAGTAAAGAAAAGGAAGCCAAATGCCAATAAAATGTTATGTCCGTGTAAGGATTGTAGAAATATGAAACATTTTGATCTTCAAATCATACACGAGCACTTGGTCATCAAGGGAATGGACCCTACATACAATCTTTGGTATCATCATGGAGAAGTATGTGAGGAAGATGAAGTCGAAAATGAAGTTGATGATACTTTTATTGATAGTATGGTTGATAATGAACCAATTCTTAATATGTTTGAAGAGATTGATGAAAATGATGAGCTTACTTATGCAAGACAAGATTGTGAGGAGGTTTACATATCTATCATGTTTCAGATCATATCTTCTAAGTATACTTCATTCGATAAACCTCTTCTACAATGGTGA

Coding sequence (CDS)

ATGTTTGACAAAGCTTGGGTGCATTTAAATCGTGCTACTGATGAATACATGGAAGGAGCGAGGAATTTTCTACAAGAAGTAAAGAAAAGGAAGCCAAATGCCAATAAAATGTTATGTCCGTGTAAGGATTGTAGAAATATGAAACATTTTGATCTTCAAATCATACACGAGCACTTGGTCATCAAGGGAATGGACCCTACATACAATCTTTGGTATCATCATGGAGAAGTATGTGAGGAAGATGAAGTCGAAAATGAAGTTGATGATACTTTTATTGATAGTATGGTTGATAATGAACCAATTCTTAATATGTTTGAAGAGATTGATGAAAATGATGAGCTTACTTATGCAAGACAAGATTGTGAGGAGGTTTACATATCTATCATGTTTCAGATCATATCTTCTAAGTATACTTCATTCGATAAACCTCTTCTACAATGGTGA

Protein sequence

MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLVIKGMDPTYNLWYHHGEVCEEDEVENEVDDTFIDSMVDNEPILNMFEEIDENDELTYARQDCEEVYISIMFQIISSKYTSFDKPLLQW

Homology

[Close]

BLAST of Sed0002517 vs. NCBI nr
Match: KGN47253.1 (hypothetical protein Csa_017000 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF+K WVHLNRATDEYM+GA  F+++VKK     + ++CPCKDCR+M H    I++EHLV
Sbjct: 6  MFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIVYEHLV 65

Query: 61 IKGMDPTYNLWYHHG-EVCEEDEVEN 86
          IKGMDPTY + YHHG EVC ++EVE+
Sbjct: 66 IKGMDPTYKILYHHGEEVCVKEEVED 91

[Close]

BLAST of Sed0002517 vs. NCBI nr
Match: KAA0056266.1 (uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF K WVHLNRAT+EY+ GA +F+++V+      +K+ CPCK CRNM H    +++EHLV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 61 IKGMDPTYNLWYHHGE 77
          IKGMDPTY  WYHHGE
Sbjct: 61 IKGMDPTYRFWYHHGE 76

[Close]

BLAST of Sed0002517 vs. NCBI nr
Match: KAF4380758.1 (hypothetical protein F8388_017112 [Cannabis sativa])

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-19
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
           MFDK+W+  NRA++EY EGAR+F++ ++K      K+LCPCK CRN+ H  + +++EHLV
Sbjct: 39  MFDKSWLRFNRASNEYKEGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLV 98

Query: 61  IKGMDPTYNLWYHHGE 77
           I G+DPTY +W+HHGE
Sbjct: 99  INGIDPTYTVWFHHGE 114

[Close]

BLAST of Sed0002517 vs. NCBI nr
Match: KAA0055179.1 (uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-19
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF+K WVHLNRATDEYM+G   F+++VKK   + + ++CP KDCRNM H    +++EHLV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 61 IKGMDPTYNLW 72
          IKGMDPTY +W
Sbjct: 61 IKGMDPTYKIW 71

[Close]

BLAST of Sed0002517 vs. NCBI nr
Match: KAF7148012.1 (hypothetical protein RHSIM_Rhsim03G0123300 [Rhododendron simsii])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
           M DK WV L R+TDEYM  A +F++   +   N  K+LCPCKDCRN+ H  L+ ++EHLV
Sbjct: 12  MMDKDWVRLIRSTDEYMNAASSFVKMANQNVGNLGKILCPCKDCRNLSHHCLEDVYEHLV 71

Query: 61  IKGMDPTYNLWYHHGEVCEEDEVENEVDDTFIDSMVDNEPILNMFEEIDENDE 114
           IKGMDPTY  W+HHGE      VEN  +       V+     N++    E DE
Sbjct: 72  IKGMDPTYTTWFHHGE--HPSAVENPKE-------VEMSDAYNLYSAAYERDE 115

[Close]

BLAST of Sed0002517 vs. ExPASy TrEMBL
Match: A0A0A0KCH8 (Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237080 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.7e-24
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF+K WVHLNRATDEYM+GA  F+++VKK     + ++CPCKDCR+M H    I++EHLV
Sbjct: 6  MFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIVYEHLV 65

Query: 61 IKGMDPTYNLWYHHG-EVCEEDEVEN 86
          IKGMDPTY + YHHG EVC ++EVE+
Sbjct: 66 IKGMDPTYKILYHHGEEVCVKEEVED 91

[Close]

BLAST of Sed0002517 vs. ExPASy TrEMBL
Match: A0A5A7UPM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00340 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF K WVHLNRAT+EY+ GA +F+++V+      +K+ CPCK CRNM H    +++EHLV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 61 IKGMDPTYNLWYHHGE 77
          IKGMDPTY  WYHHGE
Sbjct: 61 IKGMDPTYRFWYHHGE 76

[Close]

BLAST of Sed0002517 vs. ExPASy TrEMBL
Match: A0A7J6GD52 (Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017112 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
           MFDK+W+  NRA++EY EGAR+F++ ++K      K+LCPCK CRN+ H  + +++EHLV
Sbjct: 39  MFDKSWLRFNRASNEYKEGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLV 98

Query: 61  IKGMDPTYNLWYHHGE 77
           I G+DPTY +W+HHGE
Sbjct: 99  INGIDPTYTVWFHHGE 114

[Close]

BLAST of Sed0002517 vs. ExPASy TrEMBL
Match: A0A5A7UNZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00030 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.2e-19
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1  MFDKAWVHLNRATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLV 60
          MF+K WVHLNRATDEYM+G   F+++VKK   + + ++CP KDCRNM H    +++EHLV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 61 IKGMDPTYNLW 72
          IKGMDPTY +W
Sbjct: 61 IKGMDPTYKIW 71

[Close]

BLAST of Sed0002517 vs. ExPASy TrEMBL
Match: A0A7J6HCI6 (Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011967 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 11  RATDEYMEGARNFLQEVKKRKPNANKMLCPCKDCRNMKHFDLQIIHEHLVIKGMDPTYNL 70
           RA++EY EGAR+F++ ++K      K+LCPCK CRN+ H  + +++EHLVI G+DPTY +
Sbjct: 132 RASNEYKEGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLVINGIDPTYTI 191

Query: 71  WYHHGEVC-EEDEVE 85
           W+HHGE     D++E
Sbjct: 192 WFHHGEEAPRSDDIE 206

The following BLAST results are available for this feature:

BLAST of Sed0002517 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47253.1	1.2e-23	61.63	hypothetical protein Csa_017000 [Cucumis sativus]	[more]
KAA0056266.1	7.1e-21	59.21	uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa]	[more]
KAF4380758.1	1.0e-19	53.95	hypothetical protein F8388_017112 [Cannabis sativa]	[more]
KAA0055179.1	8.7e-19	59.15	uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa]	[more]
KAF7148012.1	1.1e-18	46.02	hypothetical protein RHSIM_Rhsim03G0123300 [Rhododendron simsii]	[more]

BLAST of Sed0002517 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCH8	5.7e-24	61.63	Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237...	[more]
A0A5A7UPM1	3.4e-21	59.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A7J6GD52	5.0e-20	53.95	Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017...	[more]
A0A5A7UNZ2	4.2e-19	59.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A7J6HCI6	3.7e-15	49.33	Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011...	[more]

BLAST of Sed0002517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 4..76 e-value: 3.0E-22 score: 78.6
None	No IPR available	PANTHER	PTHR10775:SF145	TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATED	coord: 3..136
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 3..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002517.1	Sed0002517.1	mRNA