Sed0002489 (gene) Chayote v1

Overview


Name	Sed0002489
Type	gene
Organism	Sechium edule (Chayote v1)
Description	THO complex subunit 4A
Location	LG13: 19010544 .. 19013622 (+)
RNA-Seq Expression	Sed0002489
Synteny	Sed0002489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTTTCACATATATTTATCCATTAGGAAAAAAATAAAATAAAAATAGAAGTTGGTTTTGTAATCGGTTCGTGATTTCGTTAGAAACCCTAGAAGTCTGTCTCTGATCCACGACGACCACCACCACTTCTCCGGCGACGACAATGGCGGAGGCTCTGGACATGAGCTTAGACGATCTGATCAAGAACAACCAGAAATCAACGGCTGGATCCTCTCATTTCAGAGCTCGCGGCGGAGCAGCTTCTTCTGGTCCAGGCCCCTCTCGCCGCTTTCCCAATCGCAATTTCAACCGATCAGCGCCTTATTCTGCACCACCGAAGGTGAAAGAATTAGGGTTTCTCATTCTTTTCTATACGGAATTCACGGCGTTTTCTGTGTTTTAATGTTTTCCTAAACAATGGGGTTTGGGTTTAGGCTCCACACATGCCGTGGTCGCACGACATGTTTCTCGATCACAACACTGCGCCATATCCTTCACGGACCTCTGCTATCGAAACCGGCGCCAAGCTCTATGTTTCCAATTTGGATTATGGCGTTTCCAACGAAGATATCAAGGTATTCCCAACTTTGGATTTCAGGATTCTGAAGTGGGGAACTTATTTTTTTGTTGAATTTGTGTGTTCAGGAACTTTTCTCTGAAGTTGGCGATCTAAAACGGTATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGTATGGTTTCACTTTCAACAGGGGCTTTTTTTCTTTTTGTTTATTAACAATATTTTGACATTTGTTTTGATTTTGATTCTTCTAGGGAACTGCAGAAGTTGTTTTTTCACGACAAGCGGATGCTCTGGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAGCTCATGAAGTTGGAGGTTGTGGGAACAAACATCCTTACACCTGCTGTACCTGCTCCTTCAAATGCCAATTTTTGGAATCCAAATGGATTTCCTAGAGGAGGGTATATACATTTTCCCAATTTTTTTTGTTTTATTTGCTTTATTTGCTTTTGGTACCCTTGACTTCTGCCTGCCTCTTGAATAGTTATGGTGTTGTTTTGTGTACATGATCATGCATTTGCTTGTCTAGATTTCAATTTCATGGATTACCATGTCCTTTATATGATTCTGTTGGTGTTACAGTATGAAGCTGGTGCTGGTAGTGATATTTATGTATTTTTAAATGTAATTTCTAACATGGTGACTTTTCATCTGATTTTGAATTGTTGATTCTCTTAATCAACGTGCAAGGTGCATTTCATAAACTGTTATTTCGTTTTTACAGTGGACGTGCAATGGGCCGAAATCGGGGTGGTGGACGAGGTCGTGGTTTTGGTCAGGGAAGAGGAGGGCGTGGACGTGGAAGTGGAAGTGGAGGTGGCAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGAAGAAGTACCATGAAGAAGCAATGCAGATCAATTAAATCATTTGGTGACATTTTCTGGGGCTTCATTTACATAACTTCCTTAGGTGTTTGGTGATAAATGTGATAAGAACACATTTTCTGTTTTGTGAGTTATCATGAAGCCCTGAGTCCGGCCTTTAGAGAATCGCTAGATCTTTCTATGATGTGGAGTTTGGGCTTGAATTGTTGTTTATTGCAGTAAACTATAAGAGGAGTTCATTAATGCTTGATTGTGCGGCCTCGTGTTAGTGTTACTTATCTATTTTGAATTTTGACCTACTCCAATTCTACTTATTTTCTATGAAAGTTGAACTGAAACTGAGAAAGTCGTTCACGCTCTTGTCCACATGGGAGGATTGGTGCTTGACATGGAACTAACAAATCAACCACATCTTGTGTCAGAGGCCAAAATTCTGGTAAGCGTTTCTAAATCATTATATTTTTTTCTTGTCAGAATGATAGATATAGCTGAAAATGTGTTCTCTATATGATGACTCTTAGGTTCTGACTGCAGAATTTCTGCTTAATTTTCTTTATTGCCTTGCAGTGATTGTTTATGAATTAAAGTAATGTATTAAGATCTACTTATTGGCATGTAGTGAAGGGGGAAGGGAAGGGAACGGGTGTAGAGGTAATAAAGGGTGTAGAGATATATTACCAAGTGTTCAGGAGTTGGCAACGACTTTAGAGGTCCTTGAATAGATTTTTTTTCCTCTTTTTTATAAGAAACACAAACAGAATATCCAACTAACGAACCAAGACAGCCTATGGCAGGTTTAGAACACCCCTTCTCTAAACCTGTATTACCAAATGACCCCAAGGGATGACACAGTAGTTGAAAACTTGGGCTTTGATGGTATGCTCCCCTCAAGGTCTCAGATTCGAGATTCAGCTGTGACATTACTTCTTCGATGTCTCCCGGTGCCTAGCCTAGGGACGGGCATGGTTACCCTCGTCTTAAAAAAATATATGTATTACCAAATGTATGACAATTACTTTTTTGTGGTTGCTGTATGACTGTTGCTGCAGCCTCGTTTATGCATTCTGTAATTAGAAAGCAAGGCATATACCATATATTTTTTTTGAAAAAAAAGGATAATCACGCTCGTCCCTAGGATAGGCACCGGGAGACATCAAAAGAGTAATGTCACAGGTGAATCTCGAACTTGGGATCTTGAAGGCAGCATACCTTTAAAGTCTAAGTTTTTAACCACGTGCCACCTCTTGGGGACAAGGCATAGACCATATAATAATCTAGGAATTCATTCTATAATTTTAGGTTTCTTTTTTGTTCCTCTATTTTAATTTTAATATATTTAGATAGCAAAAAAAGTTAGAGGAATAATGATACTTTTACATTGATCTTCTAGGGGAAAAACTGAGTGCAGTTGGTCACTGGTCAGAGTAGAACCAAGATAGATTTTACAATACTGGCTTATTTTAGTAAGATTTTGCTTCTACATTATTGTTATTATTCAGATTTATACCTTCTCACTTTTGTTTGAAGGTTTCTAAGATTTAAATTTAGCTCGTTTACATTTGACGAATAGATGAAGACACTATTGTTCCTTGTTAAAGTTTAGAGTTGAATTTGTTGCATTTTTCTTTTGGTATTCATGACTGTTCGG

mRNA sequence

CTAATTTTCACATATATTTATCCATTAGGAAAAAAATAAAATAAAAATAGAAGTTGGTTTTGTAATCGGTTCGTGATTTCGTTAGAAACCCTAGAAGTCTGTCTCTGATCCACGACGACCACCACCACTTCTCCGGCGACGACAATGGCGGAGGCTCTGGACATGAGCTTAGACGATCTGATCAAGAACAACCAGAAATCAACGGCTGGATCCTCTCATTTCAGAGCTCGCGGCGGAGCAGCTTCTTCTGGTCCAGGCCCCTCTCGCCGCTTTCCCAATCGCAATTTCAACCGATCAGCGCCTTATTCTGCACCACCGAAGGCTCCACACATGCCGTGGTCGCACGACATGTTTCTCGATCACAACACTGCGCCATATCCTTCACGGACCTCTGCTATCGAAACCGGCGCCAAGCTCTATGTTTCCAATTTGGATTATGGCGTTTCCAACGAAGATATCAAGGAACTTTTCTCTGAAGTTGGCGATCTAAAACGGTATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACTGCAGAAGTTGTTTTTTCACGACAAGCGGATGCTCTGGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAGCTCATGAAGTTGGAGGTTGTGGGAACAAACATCCTTACACCTGCTGTACCTGCTCCTTCAAATGCCAATTTTTGGAATCCAAATGGATTTCCTAGAGGAGGTGGACGTGCAATGGGCCGAAATCGGGGTGGTGGACGAGGTCGTGGTTTTGGTCAGGGAAGAGGAGGGCGTGGACGTGGAAGTGGAAGTGGAGGTGGCAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGAAGAAGTACCATGAAGAAGCAATGCAGATCAATTAAATCATTTGGTGACATTTTCTGGGGCTTCATTTACATAACTTCCTTAGGTGTTTGGTGATAAATGTGATAAGAACACATTTTCTGTTTTGTGAGTTATCATGAAGCCCTGAGTCCGGCCTTTAGAGAATCGCTAGATCTTTCTATGATGTGGAGTTTGGGCTTGAATTGTTGTTTATTGCAGTAAACTATAAGAGGAGTTCATTAATGCTTGATTGTGCGGCCTCGTGTTAGTGTTACTTATCTATTTTGAATTTTGACCTACTCCAATTCTACTTATTTTCTATGAAAGTTGAACTGAAACTGAGAAAGTCGTTCACGCTCTTGTCCACATGGGAGGATTGGTGCTTGACATGGAACTAACAAATCAACCACATCTTGTGTCAGAGGCCAAAATTCTGGGGAAAAACTGAGTGCAGTTGGTCACTGGTCAGAGTAGAACCAAGATAGATTTTACAATACTGGCTTATTTTAGTAAGATTTTGCTTCTACATTATTGTTATTATTCAGATTTATACCTTCTCACTTTTGTTTGAAGGTTTCTAAGATTTAAATTTAGCTCGTTTACATTTGACGAATAGATGAAGACACTATTGTTCCTTGTTAAAGTTTAGAGTTGAATTTGTTGCATTTTTCTTTTGGTATTCATGACTGTTCGG

Coding sequence (CDS)

ATGGCGGAGGCTCTGGACATGAGCTTAGACGATCTGATCAAGAACAACCAGAAATCAACGGCTGGATCCTCTCATTTCAGAGCTCGCGGCGGAGCAGCTTCTTCTGGTCCAGGCCCCTCTCGCCGCTTTCCCAATCGCAATTTCAACCGATCAGCGCCTTATTCTGCACCACCGAAGGCTCCACACATGCCGTGGTCGCACGACATGTTTCTCGATCACAACACTGCGCCATATCCTTCACGGACCTCTGCTATCGAAACCGGCGCCAAGCTCTATGTTTCCAATTTGGATTATGGCGTTTCCAACGAAGATATCAAGGAACTTTTCTCTGAAGTTGGCGATCTAAAACGGTATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACTGCAGAAGTTGTTTTTTCACGACAAGCGGATGCTCTGGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAGCTCATGAAGTTGGAGGTTGTGGGAACAAACATCCTTACACCTGCTGTACCTGCTCCTTCAAATGCCAATTTTTGGAATCCAAATGGATTTCCTAGAGGAGGTGGACGTGCAATGGGCCGAAATCGGGGTGGTGGACGAGGTCGTGGTTTTGGTCAGGGAAGAGGAGGGCGTGGACGTGGAAGTGGAAGTGGAGGTGGCAGAGGTCGTGGTGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGAAGAAGTACCATGAAGAAGCAATGCAGATCAATTAA

Protein sequence

MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKAPHMPWSHDMFLDHNTAPYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSNANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDADLKKYHEEAMQIN

Homology

[Close]

BLAST of Sed0002489 vs. NCBI nr
Match: XP_008457549.1 (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 9.4e-98
Identity = 209/252 (82.94%), Postives = 220/252 (87.30%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FRARGG ASSGPGPSRRF NR  NR+ PYS   KA
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRARGG-ASSGPGPSRRFRNRGLNRATPYST-SKA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A   +P R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 61  PETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE++FSR ADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPAPSN
Sbjct: 121 SINYDKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
           A+F N NGFPR GGRAMGRNRGGGRGR  G GRGGRGRGSGSG GRGRGEKLSAEDLDAD
Sbjct: 181 ASFGNHNGFPR-GGRAMGRNRGGGRGR--GPGRGGRGRGSGSGSGRGRGEKLSAEDLDAD 240

Query: 241 LKKYHEEAMQIN 251
           L KYHEEAMQIN
Sbjct: 241 LDKYHEEAMQIN 245

[Close]

BLAST of Sed0002489 vs. NCBI nr
Match: XP_004149042.2 (THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical protein Csa_019988 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 1.2e-97
Identity = 209/255 (81.96%), Postives = 221/255 (86.67%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FRARGG ASSGPGPSRRF NR  NR+ PYS   KA
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRARGG-ASSGPGPSRRFRNRGLNRATPYST-SKA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A   +P R SAIETG KLYVSNLDYGVSNEDIKELFSEVGD+KRY
Sbjct: 61  PETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPAPSN
Sbjct: 121 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRG---GRGRGSGSGGGRGRGEKLSAEDL 240
           A+F NPNGFPR GGRAMGRNRGGGRGRG G+GRG   G G GSGSG GRG GEKLSAEDL
Sbjct: 181 ASFGNPNGFPR-GGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDL 240

Query: 241 DADLKKYHEEAMQIN 251
           DADL KYHEEAMQIN
Sbjct: 241 DADLDKYHEEAMQIN 250

[Close]

BLAST of Sed0002489 vs. NCBI nr
Match: XP_038895300.1 (THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 362.1 bits (928), Expect = 3.9e-96
Identity = 210/253 (83.00%), Postives = 221/253 (87.35%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FR RGG ASSGPGPSRRF NR  NR+APYS   KA
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRGRGG-ASSGPGPSRRFRNRGLNRAAPYS-NAKA 60

Query: 61  PHMPWSHDMFLDHNTAPYPS---RTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKR 120
           P   WSHDMF+DH  A YPS   R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKR
Sbjct: 61  PETAWSHDMFVDHGAA-YPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKR 120

Query: 121 YSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPS 180
           YSINYDKSGRSKGTAE+VFSRQ+DALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPA S
Sbjct: 121 YSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPASS 180

Query: 181 NANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDA 240
           NA F NPNGFPR GGRA+GRNRGGGRGR  G GRGGRGRGSGS  GRGRGEKLSAEDLDA
Sbjct: 181 NAGFGNPNGFPR-GGRALGRNRGGGRGR--GPGRGGRGRGSGS--GRGRGEKLSAEDLDA 240

Query: 241 DLKKYHEEAMQIN 251
           DL+KYHEEAMQIN
Sbjct: 241 DLEKYHEEAMQIN 243

[Close]

BLAST of Sed0002489 vs. NCBI nr
Match: XP_022970368.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 5.3e-93
Identity = 202/252 (80.16%), Postives = 215/252 (85.32%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FR RGG ASSGPGPSRRF NR  NR+APYS   +A
Sbjct: 37  MAEPLDMSLDDIIKNNKKS--GSSNFRGRGG-ASSGPGPSRRFRNRGLNRAAPYST-AQA 96

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A    P+R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 97  PETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 156

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGKLMKLE+VGTNI+TPAVPA +N
Sbjct: 157 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASAN 216

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
            NF NPNGF R GG  +GRNRGGGRGR  G GRGGRG GS S   RGRGEKLSAEDLDAD
Sbjct: 217 GNFGNPNGF-RRGGHVLGRNRGGGRGR--GPGRGGRGHGSSS---RGRGEKLSAEDLDAD 276

Query: 241 LKKYHEEAMQIN 251
           L+KYHEEAMQIN
Sbjct: 277 LEKYHEEAMQIN 278

[Close]

BLAST of Sed0002489 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 351.3 bits (900), Expect = 6.9e-93
Identity = 202/252 (80.16%), Postives = 216/252 (85.71%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FR RGG ASSGPGPSRRF NR  NR+APYS   +A
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRGRGG-ASSGPGPSRRFRNRGLNRAAPYST-AQA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH +A    P+R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 61  PETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPA +N
Sbjct: 121 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASAN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
            NF NPNGF R GG  +GRNRGGGRGR  G GRGGRGRGS S   RGRGEKLSAEDLDAD
Sbjct: 181 GNFGNPNGF-RRGGHVLGRNRGGGRGR--GPGRGGRGRGSSS---RGRGEKLSAEDLDAD 240

Query: 241 LKKYHEEAMQIN 251
           L+KYHEEAMQIN
Sbjct: 241 LEKYHEEAMQIN 242

[Close]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.7e-63
Identity = 152/253 (60.08%), Postives = 183/253 (72.33%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRR-FPNRNFNRSAPYSAPPK 60
           M+  LDMSLDD+I  N+KS  G+    ARG  + SGPGP+RR  PNR   RSAPY +  K
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAG--PARGTGSGSGPGPTRRNNPNRKSTRSAPYQS-AK 60

Query: 61  APHMPWSHDMFLDHNTAPYPSRTSA-IETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           AP   W HDMF D +      R+SA IETG KLY+SNLDYGV NEDIKELF+EVG+LKRY
Sbjct: 61  APESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           ++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGK MK+E+VGTN+ T A P+   
Sbjct: 121 TVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 180

Query: 181 ANFWNPNGFP-RGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDA 240
           AN  N NG P RGG    G+ RGGGRG G G+G GGRGR      G+G  EK+SAEDLDA
Sbjct: 181 AN-GNSNGAPWRGGQGRGGQQRGGGRGGG-GRGGGGRGRRP----GKGPAEKISAEDLDA 240

Query: 241 DLKKYHEEAMQIN 251
           DL KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 244

[Close]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-62
Identity = 160/291 (54.98%), Postives = 189/291 (64.95%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKST--------AGSSHFRARGGAASSGPGPSRRFPNRNFNRSA 60
           M+  LDMSLDD+IK+N+K T         G ++   RGG+ S+  GPSRRF NR   R+A
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNS-GPSRRFANRVGARTA 60

Query: 61  PYSAP---PKAPHMPWSHDMF---------LDHNTAPYPSRTSAIETGAKLYVSNLDYGV 120
           PYS P    +A    W +D+F           H+        S+IETG KLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 SNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMK 180
           SNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGKLMK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 LEVVGTNILTPA--------VPAPS-----------NANF---WNPNGFPRGGGRAMGRN 240
           +E+VGTN+  PA        +P P+           N NF   +N N   RG G  MGR 
Sbjct: 181 IEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

Query: 241 RGGGRGRG-FGQGRGGRGRGSGSGGGRGRGEKLSAEDLDADLKKYHEEAMQ 249
           RGGG G G F  GRG RGRG    GGRGR E +SAEDLDA+L KYH+EAM+
Sbjct: 241 RGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.0e-35
Identity = 118/288 (40.97%), Postives = 164/288 (56.94%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGS---SHFRARG-GAASSGPGPSRRFPNRNFNRSAPYSA 60
           M+ AL+M+LD+++K  + + +G    S  R RG G    G GP+RR P     R + ++ 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  PP---KAPHMPWSHDMFLDHNTAPYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVG 120
                +   +PW   +F D   A   +  S +E G +L+V+NLD GV+NEDI+ELFSE+G
Sbjct: 61  NKPVRRVRSLPWQSGLFEDGLRA---AGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIG 120

Query: 121 DLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPA- 180
           +++RY+I+YDK+GR  GTAEVV+ R++DA  A+K+YNNV LDG+ M+LE++G N  + A 
Sbjct: 121 EVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAP 180

Query: 181 VPAPSNANFWNPNGFPR--------GGGRAMGRNRGGGR----------------GRGFG 240
           +    N N    NG  +        GGGR   R   GGR                G G  
Sbjct: 181 LSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMR 240

Query: 241 QGRGG---RGRGSGS---GGGRGRGEK---LSAEDLDADLKKYHEEAM 248
            GRGG   RGRG+G    GGGRG G+K    SA DLD DL+ YH +AM
Sbjct: 241 GGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAM 285

[Close]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-34
Identity = 118/267 (44.19%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASS---------------GPGPSRRFP- 60
           MA+ +DMSLDD+IK N+    G    R RG A S                G GP R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  ------NRNFNRSAPYSAPPKAPHMPWSHDMFLDHNTAPYPSRTSAIETGAKLYVSNLDY 120
                     NR APYS P + P   W HD+F D          + +ETG KL VSNLD+
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPD-KWQHDLF-DSGF----GGGAGVETGGKLLVSNLDF 120

Query: 121 GVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKL 180
           GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+ 
Sbjct: 121 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 180

Query: 181 MKLEVVGTNILTPAVPAPSNANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRG--R 240
           M +++V + I T   PA S           RGG   M RNRG G   G G  RG RG  R
Sbjct: 181 MNIQLVTSQIDTQRRPAQS---------INRGG---MTRNRGSGGFGGGGTRRGTRGGSR 240

Query: 241 GSGSGGGRGRGEKLSAEDLDADLKKYH 244
           G G G GR   ++LSAE+LDA L  Y+
Sbjct: 241 GRGRGTGRNSKQQLSAEELDAQLDAYN 249

[Close]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-34
Identity = 120/269 (44.61%), Postives = 150/269 (55.76%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASS---------------GPGPSRRFP- 60
           MA+ +DMSLDD+IK N+    G    R RG A S                G GP R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  -------NRNFNRSAPYSAPPKAPHMPWSHDMFLDHNTAPYPSRTSAIETGAKLYVSNLD 120
                      NR APYS P + P   W HD+F D          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPD-KWQHDLF-DSGF----GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 LMKLEVVGTNILTPAVPAPSNANFWNPNGFPRGGGRAMGRNRG-GGRGRGFGQGRGGRG- 240
            M +++V + I T   PA S           RGG   M RNRG GG G G G  RG RG 
Sbjct: 181 PMNIQLVTSQIDTQRRPAQS---------VNRGG---MTRNRGSGGFGGGGGTRRGTRGG 240

Query: 241 -RGSGSGGGRGRGEKLSAEDLDADLKKYH 244
            RG G G GR   ++LSAE+LDA L  Y+
Sbjct: 241 SRGRGRGTGRSSKQQLSAEELDAQLDAYN 251

[Close]

BLAST of Sed0002489 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.5e-98
Identity = 209/252 (82.94%), Postives = 220/252 (87.30%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FRARGG ASSGPGPSRRF NR  NR+ PYS   KA
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRARGG-ASSGPGPSRRFRNRGLNRATPYST-SKA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A   +P R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 61  PETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE++FSR ADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPAPSN
Sbjct: 121 SINYDKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
           A+F N NGFPR GGRAMGRNRGGGRGR  G GRGGRGRGSGSG GRGRGEKLSAEDLDAD
Sbjct: 181 ASFGNHNGFPR-GGRAMGRNRGGGRGR--GPGRGGRGRGSGSGSGRGRGEKLSAEDLDAD 240

Query: 241 LKKYHEEAMQIN 251
           L KYHEEAMQIN
Sbjct: 241 LDKYHEEAMQIN 245

[Close]

BLAST of Sed0002489 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.9e-98
Identity = 209/255 (81.96%), Postives = 221/255 (86.67%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FRARGG ASSGPGPSRRF NR  NR+ PYS   KA
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRARGG-ASSGPGPSRRFRNRGLNRATPYST-SKA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A   +P R SAIETG KLYVSNLDYGVSNEDIKELFSEVGD+KRY
Sbjct: 61  PETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPAPSN
Sbjct: 121 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRG---GRGRGSGSGGGRGRGEKLSAEDL 240
           A+F NPNGFPR GGRAMGRNRGGGRGRG G+GRG   G G GSGSG GRG GEKLSAEDL
Sbjct: 181 ASFGNPNGFPR-GGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDL 240

Query: 241 DADLKKYHEEAMQIN 251
           DADL KYHEEAMQIN
Sbjct: 241 DADLDKYHEEAMQIN 250

[Close]

BLAST of Sed0002489 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 202/252 (80.16%), Postives = 215/252 (85.32%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FR RGG ASSGPGPSRRF NR  NR+APYS   +A
Sbjct: 37  MAEPLDMSLDDIIKNNKKS--GSSNFRGRGG-ASSGPGPSRRFRNRGLNRAAPYST-AQA 96

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH  A    P+R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 97  PETAWSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 156

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGKLMKLE+VGTNI+TPAVPA +N
Sbjct: 157 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASAN 216

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
            NF NPNGF R GG  +GRNRGGGRGR  G GRGGRG GS S   RGRGEKLSAEDLDAD
Sbjct: 217 GNFGNPNGF-RRGGHVLGRNRGGGRGR--GPGRGGRGHGSSS---RGRGEKLSAEDLDAD 276

Query: 241 LKKYHEEAMQIN 251
           L+KYHEEAMQIN
Sbjct: 277 LEKYHEEAMQIN 278

[Close]

BLAST of Sed0002489 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.4e-93
Identity = 202/252 (80.16%), Postives = 216/252 (85.71%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           MAE LDMSLDD+IKNN+KS  GSS+FR RGG ASSGPGPSRRF NR  NR+APYS   +A
Sbjct: 1   MAEPLDMSLDDIIKNNKKS--GSSNFRGRGG-ASSGPGPSRRFRNRGLNRAAPYST-AQA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P   WSHDMF+DH +A    P+R SAIETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 61  PETAWSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGK MKLE+VGTNI+TPAVPA +N
Sbjct: 121 SINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASAN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
            NF NPNGF R GG  +GRNRGGGRGR  G GRGGRGRGS S   RGRGEKLSAEDLDAD
Sbjct: 181 GNFGNPNGF-RRGGHVLGRNRGGGRGR--GPGRGGRGRGSSS---RGRGEKLSAEDLDAD 240

Query: 241 LKKYHEEAMQIN 251
           L+KYHEEAMQIN
Sbjct: 241 LEKYHEEAMQIN 242

[Close]

BLAST of Sed0002489 vs. ExPASy TrEMBL
Match: A0A6J1GAN0 (THO complex subunit 4A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.7e-90
Identity = 195/252 (77.38%), Postives = 211/252 (83.73%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRRFPNRNFNRSAPYSAPPKA 60
           M + LD SLDD+IKNN+KS  GSS+FR RGG ASSGP PSRRF NR  NR+APYS   KA
Sbjct: 1   MVDPLDTSLDDIIKNNKKS--GSSNFRGRGG-ASSGPAPSRRFYNRGLNRAAPYSR-AKA 60

Query: 61  PHMPWSHDMFLDHNTA--PYPSRTSAIETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           P  PWSHD+F+DH  A   +P+R S IETG KLYVSNLDYGVSNEDIKELFSEVGDLKRY
Sbjct: 61  PETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGK MKLE+VG NI+TP +PA SN
Sbjct: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSN 180

Query: 181 ANFWNPNGFPRGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDAD 240
            NF N +GF RG GRA+GRNRGGGRGR  G GRGGRGRG+G GG    GEKLSAEDLDAD
Sbjct: 181 PNFGNSSGFLRGSGRALGRNRGGGRGR--GPGRGGRGRGNGRGG----GEKLSAEDLDAD 240

Query: 241 LKKYHEEAMQIN 251
           L+KYHEEAMQIN
Sbjct: 241 LEKYHEEAMQIN 242

[Close]

BLAST of Sed0002489 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.9e-64
Identity = 152/253 (60.08%), Postives = 183/253 (72.33%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRR-FPNRNFNRSAPYSAPPK 60
           M+  LDMSLDD+I  N+KS  G+    ARG  + SGPGP+RR  PNR   RSAPY +  K
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAG--PARGTGSGSGPGPTRRNNPNRKSTRSAPYQS-AK 60

Query: 61  APHMPWSHDMFLDHNTAPYPSRTSA-IETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           AP   W HDMF D +      R+SA IETG KLY+SNLDYGV NEDIKELF+EVG+LKRY
Sbjct: 61  APESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           ++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGK MK+E+VGTN+ T A P+   
Sbjct: 121 TVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 180

Query: 181 ANFWNPNGFP-RGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDA 240
           AN  N NG P RGG    G+ RGGGRG G G+G GGRGR      G+G  EK+SAEDLDA
Sbjct: 181 AN-GNSNGAPWRGGQGRGGQQRGGGRGGG-GRGGGGRGRRP----GKGPAEKISAEDLDA 240

Query: 241 DLKKYHEEAMQIN 251
           DL KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 244

[Close]

BLAST of Sed0002489 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-64
Identity = 152/254 (59.84%), Postives = 183/254 (72.05%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRR-FPNRNFNRSAPYSAPPK 60
           M+  LDMSLDD+I  N+KS  G+    ARG  + SGPGP+RR  PNR   RSAPY +  K
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAG--PARGTGSGSGPGPTRRNNPNRKSTRSAPYQS-AK 60

Query: 61  APHMPWSHDMFLDHNTAPYPSRTSA-IETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           AP   W HDMF D +      R+SA IETG KLY+SNLDYGV NEDIKELF+EVG+LKRY
Sbjct: 61  APESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           ++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGK MK+E+VGTN+ T A P+   
Sbjct: 121 TVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 180

Query: 181 ANFWNPNGFP--RGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLD 240
           AN  N NG P  RGG    G+ RGGGRG G G+G GGRGR      G+G  EK+SAEDLD
Sbjct: 181 AN-GNSNGAPWSRGGQGRGGQQRGGGRGGG-GRGGGGRGRRP----GKGPAEKISAEDLD 240

Query: 241 ADLKKYHEEAMQIN 251
           ADL KYH   M+ N
Sbjct: 241 ADLDKYHSGDMETN 245

[Close]

BLAST of Sed0002489 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 241.5 bits (615), Expect = 7.2e-64
Identity = 151/253 (59.68%), Postives = 182/253 (71.94%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKSTAGSSHFRARGGAASSGPGPSRR-FPNRNFNRSAPYSAPPK 60
           M+  LDMSLDD+I  N+KS  G+    ARG  + SGPGP+RR  PNR   RSAPY +   
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAG--PARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--- 60

Query: 61  APHMPWSHDMFLDHNTAPYPSRTSA-IETGAKLYVSNLDYGVSNEDIKELFSEVGDLKRY 120
           AP   W HDMF D +      R+SA IETG KLY+SNLDYGV NEDIKELF+EVG+LKRY
Sbjct: 61  APESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRY 120

Query: 121 SINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMKLEVVGTNILTPAVPAPSN 180
           ++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGK MK+E+VGTN+ T A P+   
Sbjct: 121 TVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRP 180

Query: 181 ANFWNPNGFP-RGGGRAMGRNRGGGRGRGFGQGRGGRGRGSGSGGGRGRGEKLSAEDLDA 240
           AN  N NG P RGG    G+ RGGGRG G G+G GGRGR      G+G  EK+SAEDLDA
Sbjct: 181 AN-GNSNGAPWRGGQGRGGQQRGGGRGGG-GRGGGGRGRRP----GKGPAEKISAEDLDA 240

Query: 241 DLKKYHEEAMQIN 251
           DL KYH   M+ N
Sbjct: 241 DLDKYHSGDMETN 242

[Close]

BLAST of Sed0002489 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-63
Identity = 161/289 (55.71%), Postives = 189/289 (65.40%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKST--------AGSSHFRARGGAASSGPGPSRRFPNRNFNRSA 60
           M+  LDMSLDD+IK+N+K T         G ++   RGG+ S+  GPSRRF NR   R+A
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNS-GPSRRFANRVGARTA 60

Query: 61  PYSAP---PKAPHMPWSHDMF---------LDHNTAPYPSRTSAIETGAKLYVSNLDYGV 120
           PYS P    +A    W +D+F           H+        S+IETG KLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 SNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMK 180
           SNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGKLMK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 LEVVGTNILTPA--------VPAPS-----------NANF-WNPNGFPRGGGRAMGRNRG 240
           +E+VGTN+  PA        +P P+           N NF  N NG  RG G  MGR RG
Sbjct: 181 IEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRG 240

Query: 241 GGRGRG-FGQGRGGRGRGSGSGGGRGRGEKLSAEDLDADLKKYHEEAMQ 249
           GG G G F  GRG RGRG    GGRGR E +SAEDLDA+L KYH+EAM+
Sbjct: 241 GGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 288

[Close]

BLAST of Sed0002489 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-63
Identity = 160/291 (54.98%), Postives = 189/291 (64.95%), Query Frame = 0


Query: 1   MAEALDMSLDDLIKNNQKST--------AGSSHFRARGGAASSGPGPSRRFPNRNFNRSA 60
           M+  LDMSLDD+IK+N+K T         G ++   RGG+ S+  GPSRRF NR   R+A
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNS-GPSRRFANRVGARTA 60

Query: 61  PYSAP---PKAPHMPWSHDMF---------LDHNTAPYPSRTSAIETGAKLYVSNLDYGV 120
           PYS P    +A    W +D+F           H+        S+IETG KLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 SNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKLMK 180
           SNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGKLMK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 LEVVGTNILTPA--------VPAPS-----------NANF---WNPNGFPRGGGRAMGRN 240
           +E+VGTN+  PA        +P P+           N NF   +N N   RG G  MGR 
Sbjct: 181 IEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

Query: 241 RGGGRGRG-FGQGRGGRGRGSGSGGGRGRGEKLSAEDLDADLKKYHEEAMQ 249
           RGGG G G F  GRG RGRG    GGRGR E +SAEDLDA+L KYH+EAM+
Sbjct: 241 RGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

The following BLAST results are available for this feature:

BLAST of Sed0002489 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457549.1	9.4e-98	82.94	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
XP_004149042.2	1.2e-97	81.96	THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical pro...	[more]
XP_038895300.1	3.9e-96	83.00	THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subu...	[more]
XP_022970368.1	5.3e-93	80.16	THO complex subunit 4A-like [Cucurbita maxima]	[more]
XP_022964653.1	6.9e-93	80.16	THO complex subunit 4B-like [Cucurbita moschata]	[more]

BLAST of Sed0002489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	2.7e-63	60.08	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	5.0e-62	54.98	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	9.0e-35	40.97	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
O08583	2.0e-34	44.19	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]
Q3T0I4	2.6e-34	44.61	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]

BLAST of Sed0002489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5R6	4.5e-98	82.94	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
A0A0A0LUQ3	5.9e-98	81.96	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV...	[more]
A0A6J1I3N4	2.6e-93	80.16	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=...	[more]
A0A6J1HLI4	3.4e-93	80.16	THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S...	[more]
A0A6J1GAN0	2.7e-90	77.38	THO complex subunit 4A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Sed0002489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	1.9e-64	60.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	2.5e-64	59.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	7.2e-64	59.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	1.2e-63	55.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	3.6e-63	54.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 183..250 e-value: 1.6E-9 score: 47.7
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 192..243 e-value: 1.2E-5 score: 25.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..162 e-value: 6.2E-19 score: 78.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..159 e-value: 6.4E-16 score: 58.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..166 score: 15.971415
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 73..231 e-value: 8.1E-27 score: 96.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..236
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..249
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..249
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 89..162 e-value: 2.10822E-43 score: 139.697
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 39..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002489.1	Sed0002489.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding