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Sed0002219 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCCTTCGAAAACGTCGTTTAAGCACGACGAAAACCCCGCTACCGCTCACAATGCTCGAGGAATCGGATACCCACTAGAGGCTTATCCGCCACCGCAACATTACGGTGGCGGATATCCATACCCTCCACTGCAGCCAATGGCCGGGTACGGTGGATATCCGTATGGACCATATCCTCCACCCTATAGTTTTCAACATTCACCGCCACCTCCACCGCCAGCCCTTGCTCATGGATATGCTCCGCCGATGGGATATCCATCGACGGAGAATGTTCAGAAGAAGAAAAAGAAGAAGTCGGGAATGAGCAAGATACTCGGATTGGGAGCGGGGTTGGTCGGTGGAGTGGTGGGCGGGCTGTTGCTCGGAGATTTGGCAGCGGATGTCGGGGCGGCGGCACCGTCGTTTGAGTCATTTTCCGATGGCGGCGGCGGCGGAATTGATCAATTGTGTGATGCAAGCATTCAATCTGCGTCGGAGAGTATTGATTTTCTTGGTACCATTGGTTGA ATGGACCCTTCGAAAACGTCGTTTAAGCACGACGAAAACCCCGCTACCGCTCACAATGCTCGAGGAATCGGATACCCACTAGAGGCTTATCCGCCACCGCAACATTACGGTGGCGGATATCCATACCCTCCACTGCAGCCAATGGCCGGGTACGGTGGATATCCGTATGGACCATATCCTCCACCCTATAGTTTTCAACATTCACCGCCACCTCCACCGCCAGCCCTTGCTCATGGATATGCTCCGCCGATGGGATATCCATCGACGGAGAATGTTCAGAAGAAGAAAAAGAAGAAGTCGGGAATGAGCAAGATACTCGGATTGGGAGCGGGGTTGGTCGGTGGAGTGGTGGGCGGGCTGTTGCTCGGAGATTTGGCAGCGGATGTCGGGGCGGCGGCACCGTCGTTTGAGTCATTTTCCGATGGCGGCGGCGGCGGAATTGATCAATTGTGTGATGCAAGCATTCAATCTGCGTCGGAGAGTATTGATTTTCTTGGTACCATTGGTTGA ATGGACCCTTCGAAAACGTCGTTTAAGCACGACGAAAACCCCGCTACCGCTCACAATGCTCGAGGAATCGGATACCCACTAGAGGCTTATCCGCCACCGCAACATTACGGTGGCGGATATCCATACCCTCCACTGCAGCCAATGGCCGGGTACGGTGGATATCCGTATGGACCATATCCTCCACCCTATAGTTTTCAACATTCACCGCCACCTCCACCGCCAGCCCTTGCTCATGGATATGCTCCGCCGATGGGATATCCATCGACGGAGAATGTTCAGAAGAAGAAAAAGAAGAAGTCGGGAATGAGCAAGATACTCGGATTGGGAGCGGGGTTGGTCGGTGGAGTGGTGGGCGGGCTGTTGCTCGGAGATTTGGCAGCGGATGTCGGGGCGGCGGCACCGTCGTTTGAGTCATTTTCCGATGGCGGCGGCGGCGGAATTGATCAATTGTGTGATGCAAGCATTCAATCTGCGTCGGAGAGTATTGATTTTCTTGGTACCATTGGTTGA MDPSKTSFKHDENPATAHNARGIGYPLEAYPPPQHYGGGYPYPPLQPMAGYGGYPYGPYPPPYSFQHSPPPPPPALAHGYAPPMGYPSTENVQKKKKKKSGMSKILGLGAGLVGGVVGGLLLGDLAADVGAAAPSFESFSDGGGGGIDQLCDASIQSASESIDFLGTIG Homology
BLAST of Sed0002219 vs. NCBI nr
Match: XP_022959345.1 (protein SRC2-like [Cucurbita moschata]) HSP 1 Score: 189.1 bits (479), Expect = 3.1e-44 Identity = 113/187 (60.43%), Postives = 125/187 (66.84%), Query Frame = 0
BLAST of Sed0002219 vs. NCBI nr
Match: XP_023006250.1 (polyadenylation factor subunit 2-like [Cucurbita maxima]) HSP 1 Score: 188.7 bits (478), Expect = 4.0e-44 Identity = 112/188 (59.57%), Postives = 126/188 (67.02%), Query Frame = 0
BLAST of Sed0002219 vs. NCBI nr
Match: KAG6575060.1 (hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 187.2 bits (474), Expect = 1.2e-43 Identity = 112/187 (59.89%), Postives = 124/187 (66.31%), Query Frame = 0
BLAST of Sed0002219 vs. NCBI nr
Match: XP_023548312.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43 Identity = 111/186 (59.68%), Postives = 124/186 (66.67%), Query Frame = 0
BLAST of Sed0002219 vs. NCBI nr
Match: XP_038875072.1 (formin-like protein 20 [Benincasa hispida]) HSP 1 Score: 148.3 bits (373), Expect = 6.0e-32 Identity = 103/187 (55.08%), Postives = 119/187 (63.64%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy Swiss-Prot
Match: O04133 (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08 Identity = 56/147 (38.10%), Postives = 71/147 (48.30%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy TrEMBL
Match: A0A6J1H610 (protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44 Identity = 113/187 (60.43%), Postives = 125/187 (66.84%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy TrEMBL
Match: A0A6J1KZM6 (polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499038 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.9e-44 Identity = 112/188 (59.57%), Postives = 126/188 (67.02%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy TrEMBL
Match: A0A6J1CB10 (protein SRC2-like OS=Momordica charantia OX=3673 GN=LOC111009847 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13 Identity = 70/171 (40.94%), Postives = 92/171 (53.80%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy TrEMBL
Match: A0A2P5ES55 (C2 domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_158920 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12 Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 0
BLAST of Sed0002219 vs. ExPASy TrEMBL
Match: A0A7N2LUS8 (C2 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12 Identity = 65/150 (43.33%), Postives = 78/150 (52.00%), Query Frame = 0
BLAST of Sed0002219 vs. TAIR 10
Match: AT3G16510.1 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 54.7 bits (130), Expect = 8.5e-08 Identity = 56/155 (36.13%), Postives = 71/155 (45.81%), Query Frame = 0
BLAST of Sed0002219 vs. TAIR 10
Match: AT1G09070.1 (soybean gene regulated by cold-2 ) HSP 1 Score: 44.7 bits (104), Expect = 8.8e-05 Identity = 48/118 (40.68%), Postives = 60/118 (50.85%), Query Frame = 0
BLAST of Sed0002219 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 41.6 bits (96), Expect = 7.4e-04 Identity = 47/115 (40.87%), Postives = 55/115 (47.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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