Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCAATCTCTTCTTGTTCTTTCTCTAGTCTTGGTGGTAGCCATTGCTGGAGTTTTTGGTGAGGCTCCAAGCACCTCCCCTTCGGCGCCGAAAGCCTCTCCATCCGACTCCAATTCTACTTCTTCTCCAGCAGCCTCTCCAAAGGCTAATTCGTCGAAGTCGGAGTCGGAGTCTCCATCCCCAGCAGCCTCTCCAAAGGCTAACTCGTCGAAGTCGGAGTCGGAGTCTCCATCCTCAGCTGCCTCCGCTCCATCTAATTCGTCGTCCAAGGCTCCATCCAGCGAGTCGCCAGCTGCTAGCACCCCGGAGTCGTCTTCCCCTGCCACTTCTCCTTCTCCGGCAGCCGACTCTCCTACTGGAGCTGACTCCCCAACAACGGCTTCATCGCCCGATTCCGACCTCTCTTCTCCCCCATCTCCCGATGCTGCCGATGGACCCGCTGCCGATGGTCCTGCCTCTGGACCTGCGGCTGATACTCCAGCTGATCCCGCCAGTGCTTCTGCTCTGGAATTCACTGCCGCCACCGTCGGAGTTGCCGTCGTAATTGTCGGAATGTTTGCTCTCTGA
mRNA sequence
ATGGCTTCTCAATCTCTTCTTGTTCTTTCTCTAGTCTTGGTGGTAGCCATTGCTGGAGTTTTTGGTGAGGCTCCAAGCACCTCCCCTTCGGCGCCGAAAGCCTCTCCATCCGACTCCAATTCTACTTCTTCTCCAGCAGCCTCTCCAAAGGCTAATTCGTCGAAGTCGGAGTCGGAGTCTCCATCCCCAGCAGCCTCTCCAAAGGCTAACTCGTCGAAGTCGGAGTCGGAGTCTCCATCCTCAGCTGCCTCCGCTCCATCTAATTCGTCGTCCAAGGCTCCATCCAGCGAGTCGCCAGCTGCTAGCACCCCGGAGTCGTCTTCCCCTGCCACTTCTCCTTCTCCGGCAGCCGACTCTCCTACTGGAGCTGACTCCCCAACAACGGCTTCATCGCCCGATTCCGACCTCTCTTCTCCCCCATCTCCCGATGCTGCCGATGGACCCGCTGCCGATGGTCCTGCCTCTGGACCTGCGGCTGATACTCCAGCTGATCCCGCCAGTGCTTCTGCTCTGGAATTCACTGCCGCCACCGTCGGAGTTGCCGTCGTAATTGTCGGAATGTTTGCTCTCTGA
Coding sequence (CDS)
ATGGCTTCTCAATCTCTTCTTGTTCTTTCTCTAGTCTTGGTGGTAGCCATTGCTGGAGTTTTTGGTGAGGCTCCAAGCACCTCCCCTTCGGCGCCGAAAGCCTCTCCATCCGACTCCAATTCTACTTCTTCTCCAGCAGCCTCTCCAAAGGCTAATTCGTCGAAGTCGGAGTCGGAGTCTCCATCCCCAGCAGCCTCTCCAAAGGCTAACTCGTCGAAGTCGGAGTCGGAGTCTCCATCCTCAGCTGCCTCCGCTCCATCTAATTCGTCGTCCAAGGCTCCATCCAGCGAGTCGCCAGCTGCTAGCACCCCGGAGTCGTCTTCCCCTGCCACTTCTCCTTCTCCGGCAGCCGACTCTCCTACTGGAGCTGACTCCCCAACAACGGCTTCATCGCCCGATTCCGACCTCTCTTCTCCCCCATCTCCCGATGCTGCCGATGGACCCGCTGCCGATGGTCCTGCCTCTGGACCTGCGGCTGATACTCCAGCTGATCCCGCCAGTGCTTCTGCTCTGGAATTCACTGCCGCCACCGTCGGAGTTGCCGTCGTAATTGTCGGAATGTTTGCTCTCTGA
Protein sequence
MASQSLLVLSLVLVVAIAGVFGEAPSTSPSAPKASPSDSNSTSSPAASPKANSSKSESESPSPAASPKANSSKSESESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAADSPTGADSPTTASSPDSDLSSPPSPDAADGPAADGPASGPAADTPADPASASALEFTAATVGVAVVIVGMFAL
Homology
BLAST of Sed0002102 vs. NCBI nr
Match:
KAA0066977.1 (mucin-1 [Cucumis melo var. makuwa] >TYK20871.1 mucin-1 [Cucumis melo var. makuwa])
HSP 1 Score: 103.2 bits (256), Expect = 2.5e-18
Identity = 113/211 (53.55%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNSTSSPAASPKANSSKSE 60
MASQS+LV +L+ V A+AGVF EAP+ SPS +PKASPSDS S S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPS-------------- 60
Query: 61 SESPSPAASPKANSSKSESESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAA 120
S SPAASPKA+ SE+ SPS AAS+PS+SSS AP+S+SP +S SSP+ SPSPA
Sbjct: 61 PSSSSPAASPKAS---SEATSPSPAASSPSSSSSDAPTSDSPTSS--PKSSPSVSPSPAT 120
Query: 121 DSPT---GADSPT-------TASSPDSDLSSPPSPDAADGP-AADGP--ASGPAADTPA- 180
DSP ADSP TA+SPDSD+SSPPSPDAAD P AADGP A GP AD+PA
Sbjct: 121 DSPADSPAADSPADNVADTPTAASPDSDVSSPPSPDAADAPTAADGPMAADGPTADSPAD 180
Query: 181 -----DPASASALEFTAATVGVAVVIVGMFA 190
D +S + L+ T+A VG V+ G +A
Sbjct: 181 SPAGDDKSSGTDLKLTSAVVG-GVIAAGFYA 191
BLAST of Sed0002102 vs. NCBI nr
Match:
XP_008450043.1 (PREDICTED: mucin-1 [Cucumis melo])
HSP 1 Score: 103.2 bits (256), Expect = 2.5e-18
Identity = 113/211 (53.55%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNSTSSPAASPKANSSKSE 60
MASQS+LV +L+ V A+AGVF EAP+ SPS +PKASPSDS S S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPS-------------- 60
Query: 61 SESPSPAASPKANSSKSESESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAA 120
S SPAASPKA+ SE+ SPS AAS+PS+SSS AP+S+SP +S SSP+ SPSPA
Sbjct: 61 PSSSSPAASPKAS---SETTSPSPAASSPSSSSSDAPTSDSPTSS--PKSSPSVSPSPAT 120
Query: 121 DSPT---GADSPT-------TASSPDSDLSSPPSPDAADGP-AADGP--ASGPAADTPA- 180
DSP ADSP TA+SPDSD+SSPPSPDAAD P AADGP A GP AD+PA
Sbjct: 121 DSPADSPAADSPADNVADTPTAASPDSDVSSPPSPDAADAPTAADGPIAADGPTADSPAD 180
Query: 181 -----DPASASALEFTAATVGVAVVIVGMFA 190
D +S + L+ T+A VG V+ G +A
Sbjct: 181 SPAGDDKSSGTDLKLTSAVVG-GVIAAGFYA 191
BLAST of Sed0002102 vs. NCBI nr
Match:
XP_031737954.1 (classical arabinogalactan protein 11 [Cucumis sativus] >KAE8650788.1 hypothetical protein Csa_017502 [Cucumis sativus])
HSP 1 Score: 88.6 bits (218), Expect = 6.4e-14
Identity = 110/223 (49.33%), Postives = 138/223 (61.88%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSN----STSSPAASPKANS 60
MASQ++LV +L+ + A+AGVF EAP+ SPS +PKASPSDS S+SSPA SPKA+
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKAS- 60
Query: 61 SKSESESPSPAASPKANSSKSESESPSSAASAP-SNSSSKAPSSESPAASTPESSSPATS 120
E+ SPSPAAS SPSS++ AP SNS + +P+S + +P + SP+ S
Sbjct: 61 --PETTSPSPAAS-----------SPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDS 120
Query: 121 P---SPAADSPTGADSPT---TASSPDSDLSSPPSPDAADGPAADGPAS----------- 180
P SP ADSP ADSP TA+SPDSD+SSPPSPDAAD P ADGPA+
Sbjct: 121 PASDSPVADSP--ADSPADTPTAASPDSDVSSPPSPDAADAPTADGPAAADGPTAADGPT 180
Query: 181 ---GP-AADTPA-----DPASASALEFTAATVGVAVVIVGMFA 190
GP AAD+PA D +S + L+ T+A V V VG FA
Sbjct: 181 AADGPVAADSPADSPASDESSGTDLKLTSAMVVGVVATVGFFA 207
BLAST of Sed0002102 vs. NCBI nr
Match:
XP_022934589.1 (mucin-1-like [Cucurbita moschata])
HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 101/235 (42.98%), Postives = 143/235 (60.85%), Query Frame = 0
Query: 1 MASQS-LLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNS---TSSPAASPKANS 60
MASQS +LV +L+ V A+AG F EAP+ +PS APK++PSDS + +SSPA+SP
Sbjct: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
Query: 61 SKSESESP--SPAASPKANSSKSESESPS-SAASAPSNSSSKAPS---------SESPAA 120
+ + +++P +PA +P + + +++P+ + A AP+ SS +PS SE+PA+
Sbjct: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
Query: 121 STPES---SSPATSPSPAADSPTG--ADSPTTASSPDSDLSSPPS--PDAADGPAADGP- 180
++P+S SSP+ SPSPA DSP ADS + A+SPDSD SSPPS PDAAD P ADGP
Sbjct: 121 NSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPS 180
Query: 181 -------------ASGPAADTPAD------PASASALEFTAATVGVAVVIVGMFA 190
A G +D+PAD + SAL+ T+A V AV + G+FA
Sbjct: 181 EADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFA 235
BLAST of Sed0002102 vs. NCBI nr
Match:
XP_022983389.1 (mucin-1-like [Cucurbita maxima])
HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNS---TSSPAASPKANSS 60
MASQS+LV +L+ V A+AG F EAP+ SPS APK++PSDS + +SSPA +P +
Sbjct: 1 MASQSVLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTPA 60
Query: 61 KSESESP--------------------------------------SPAASPKANSSKSES 120
+ +E+P +PA +P + S
Sbjct: 61 DTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASSE 120
Query: 121 ESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAADSPTG--ADSPTTASSPDS 180
SPS AASAP+ S S+AP+S SP +S SSP+ SPSP DSP ADS + A+SPDS
Sbjct: 121 SSPSPAASAPT-SPSEAPASNSPDSS--PDSSPSVSPSPDTDSPAASPADSGSPAASPDS 180
Query: 181 DLSSPPS--PDAADGPAADGPA--SGPAADTPAD------PASASALEFTAATV--GVAV 190
D SSPPS PDAAD P ADGP+ GP +D+PAD + S+L+ T+A V VAV
Sbjct: 181 DSSSPPSPTPDAADSPVADGPSEVDGPTSDSPADAPDGDADSGTSSLKLTSAAVCGAVAV 240
BLAST of Sed0002102 vs. ExPASy TrEMBL
Match:
A0A5A7VIK3 (Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 113/211 (53.55%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNSTSSPAASPKANSSKSE 60
MASQS+LV +L+ V A+AGVF EAP+ SPS +PKASPSDS S S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPS-------------- 60
Query: 61 SESPSPAASPKANSSKSESESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAA 120
S SPAASPKA+ SE+ SPS AAS+PS+SSS AP+S+SP +S SSP+ SPSPA
Sbjct: 61 PSSSSPAASPKAS---SEATSPSPAASSPSSSSSDAPTSDSPTSS--PKSSPSVSPSPAT 120
Query: 121 DSPT---GADSPT-------TASSPDSDLSSPPSPDAADGP-AADGP--ASGPAADTPA- 180
DSP ADSP TA+SPDSD+SSPPSPDAAD P AADGP A GP AD+PA
Sbjct: 121 DSPADSPAADSPADNVADTPTAASPDSDVSSPPSPDAADAPTAADGPMAADGPTADSPAD 180
Query: 181 -----DPASASALEFTAATVGVAVVIVGMFA 190
D +S + L+ T+A VG V+ G +A
Sbjct: 181 SPAGDDKSSGTDLKLTSAVVG-GVIAAGFYA 191
BLAST of Sed0002102 vs. ExPASy TrEMBL
Match:
A0A1S3BND1 (mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 113/211 (53.55%), Postives = 136/211 (64.45%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNSTSSPAASPKANSSKSE 60
MASQS+LV +L+ V A+AGVF EAP+ SPS +PKASPSDS S S
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPS-------------- 60
Query: 61 SESPSPAASPKANSSKSESESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAA 120
S SPAASPKA+ SE+ SPS AAS+PS+SSS AP+S+SP +S SSP+ SPSPA
Sbjct: 61 PSSSSPAASPKAS---SETTSPSPAASSPSSSSSDAPTSDSPTSS--PKSSPSVSPSPAT 120
Query: 121 DSPT---GADSPT-------TASSPDSDLSSPPSPDAADGP-AADGP--ASGPAADTPA- 180
DSP ADSP TA+SPDSD+SSPPSPDAAD P AADGP A GP AD+PA
Sbjct: 121 DSPADSPAADSPADNVADTPTAASPDSDVSSPPSPDAADAPTAADGPIAADGPTADSPAD 180
Query: 181 -----DPASASALEFTAATVGVAVVIVGMFA 190
D +S + L+ T+A VG V+ G +A
Sbjct: 181 SPAGDDKSSGTDLKLTSAVVG-GVIAAGFYA 191
BLAST of Sed0002102 vs. ExPASy TrEMBL
Match:
A0A0A0LDP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1)
HSP 1 Score: 83.6 bits (205), Expect = 9.9e-13
Identity = 101/196 (51.53%), Postives = 126/196 (64.29%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSN----STSSPAASPKANS 60
MASQ++LV +L+ + A+AGVF EAP+ SPS +PKASPSDS S+SSPA SPKA+
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKAS- 60
Query: 61 SKSESESPSPAASPKANSSKSESESPSSAASAP-SNSSSKAPSSESPAASTPESSSPATS 120
E+ SPSPAAS SPSS++ AP SNS + +P+S + +P + SP+ S
Sbjct: 61 --PETTSPSPAAS-----------SPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDS 120
Query: 121 P---SPAADSPTGADSPT---TASSPDSDLSSPPSPDAADGPAADGPAS--GP-AADTPA 180
P SP ADSP ADSP TA+SPDSD+SSPPSPDAAD P ADGPA+ GP AAD P
Sbjct: 121 PASDSPVADSP--ADSPADTPTAASPDSDVSSPPSPDAADAPTADGPAAADGPTAADGPT 180
BLAST of Sed0002102 vs. ExPASy TrEMBL
Match:
A0A6J1J779 (mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 104/247 (42.11%), Postives = 137/247 (55.47%), Query Frame = 0
Query: 1 MASQSLLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNS---TSSPAASPKANSS 60
MASQS+LV +L+ V A+AG F EAP+ SPS APK++PSDS + +SSPA +P +
Sbjct: 1 MASQSVLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTPA 60
Query: 61 KSESESP--------------------------------------SPAASPKANSSKSES 120
+ +E+P +PA +P + S
Sbjct: 61 DTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASSE 120
Query: 121 ESPSSAASAPSNSSSKAPSSESPAASTPESSSPATSPSPAADSPTG--ADSPTTASSPDS 180
SPS AASAP+ S S+AP+S SP +S SSP+ SPSP DSP ADS + A+SPDS
Sbjct: 121 SSPSPAASAPT-SPSEAPASNSPDSS--PDSSPSVSPSPDTDSPAASPADSGSPAASPDS 180
Query: 181 DLSSPPS--PDAADGPAADGPA--SGPAADTPAD------PASASALEFTAATV--GVAV 190
D SSPPS PDAAD P ADGP+ GP +D+PAD + S+L+ T+A V VAV
Sbjct: 181 DSSSPPSPTPDAADSPVADGPSEVDGPTSDSPADAPDGDADSGTSSLKLTSAAVCGAVAV 240
BLAST of Sed0002102 vs. ExPASy TrEMBL
Match:
A0A6J1F318 (mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 101/235 (42.98%), Postives = 143/235 (60.85%), Query Frame = 0
Query: 1 MASQS-LLVLSLVLVVAIAGVFGEAPSTSPS---APKASPSDSNS---TSSPAASPKANS 60
MASQS +LV +L+ V A+AG F EAP+ +PS APK++PSDS + +SSPA+SP
Sbjct: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
Query: 61 SKSESESP--SPAASPKANSSKSESESPS-SAASAPSNSSSKAPS---------SESPAA 120
+ + +++P +PA +P + + +++P+ + A AP+ SS +PS SE+PA+
Sbjct: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
Query: 121 STPES---SSPATSPSPAADSPTG--ADSPTTASSPDSDLSSPPS--PDAADGPAADGP- 180
++P+S SSP+ SPSPA DSP ADS + A+SPDSD SSPPS PDAAD P ADGP
Sbjct: 121 NSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPS 180
Query: 181 -------------ASGPAADTPAD------PASASALEFTAATVGVAVVIVGMFA 190
A G +D+PAD + SAL+ T+A V AV + G+FA
Sbjct: 181 EADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFA 235
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VIK3 | 1.2e-18 | 53.55 | Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4... | [more] |
A0A1S3BND1 | 1.2e-18 | 53.55 | mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1 | [more] |
A0A0A0LDP4 | 9.9e-13 | 51.53 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1 | [more] |
A0A6J1J779 | 6.7e-09 | 42.11 | mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1 | [more] |
A0A6J1F318 | 6.7e-09 | 42.98 | mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |