Sed0001833 (gene) Chayote v1

Overview


Name	Sed0001833
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box domain-containing protein
Location	LG04: 38904219 .. 38909631 (+)
RNA-Seq Expression	Sed0001833
Synteny	Sed0001833

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGAGTGAGTTCGGAGCTTTGTGTGGGCTAAGCTATGGCAGCCGAAATTCAAAAGGCCGATTTGAGGTGACAAAGGCCTTAGTTTCTTCGATGGCTGAGACGACGAAGATGGAAGAAAACAAGCAGCAGAGAAAATGGAAAAGGAAGGCCGCTTCGTCTTCTTCTTCTTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATGTTTTCAGCTTCCTTTCTCCTATACCAGGTAATTCCCCCCTTTCTCTCTGCTGCCATGTTTCAATTTCTTGATCAAATGTTTATTCCTTCAATTTTAGGGCTTTTTATTTTAGGGTTTCCTTTTCTTCCCTCTGAAAATTGCGTTGTTTGGATGAAATCGAAGGAGTCTTCTGTTTGTCGTGCTAAATCGAGAGAGTTTTTTGGATGGAAAAGAGTGAAGTCTAGCAATTTTTTGGGTGATTTTGGAAATGGATTGTGAAAAGAAAATTAATTGGGATTTCGGGTTTTACTTAAGTTGGGAATTGGTATTTTATTGTATGAACTGGGTTGTGTACTTGTACCAACATATCTAAATCGATAAAAACATATTTGAAGAGATGAATGCTTATAATTTTTTTAATTAACCTTTATAAGTTTTTATTATGTGTGTTTTAGGTGAATTTCTTGACCCTTATGGGGCTGTTTGTTTGACATATTTAGGTAGGATTTAGCTTAAGGAGTTATATTGAGGAATTATGTTGAGTACTTAAAAATTGAGACTCGTAGTCAAAAACTTGTTTGGACTTAGTTTTTGTGTAGAGGAGTTAGAGTCAAAACCTTGTTTAGATCTAGATTTAAAATAAGTAGTTATTTTGAGTAGTTAAAAAAGAAATGATTAAAAATGTTTGGTTAAAAATGAGTTATTTTGATTGATTTAAAATGAATAATTAAAAATGAATGGTTAGAAATAAGAGTTATTTTTAAAAGTAAAAATAAGGAATAGTTAGTAAAAACTCGTTTGAGTATAAGTATTGGGGAGGAATTAATAAATTCTAAAATTAAATCCTACTTAAATATGTCAAACAAACAGCCCCTATTAGTTCTCAATGTGTGTGGTTTAAGAGAAGTTTTTTTTTAAATATAATTAATTTGAGAGTTCTTTTCTTGGGCTTTGGATATGAATAGGTTGGGCTAACTCGTTGGAAAGAGTTAAGAAAACTTTTGGGGACAATGTGAAGACCTTGATGAAGTTAAACTCAATATTGTATTATCTGTTGCTCTAAGAACTCCATTTTTTTTAATACCTGTGTAGTTTTCTATTCTAGATGAGCAGATTTTTATCATTACATTAGTCTAGTGAAGTTGTTAGTAAGTGGATGCCGCCTGCATATTTCCATGTAGTTTAGTTTCTGCGTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGATACTTGGCATGTCATCCTAGGCTGTGGCTGCGTGTAGAACGGTCTATTAAAGATTTATCGGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGTAAGTTATTCGCGTTCAAGTTTTTGTTTTTTGATTAAGAACATAGTTAAATTTGGTTGTTAATAATAGAGTCTGAATGATGTTGTTCGTCATAGGCCTGGTGACACCATACTAATTGCAACGGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACGAAACCACTTTGCCTGGTGCGTACTTTTTTCTCCTTCTGTTGATTGCTTGGCAGTGAAAATTTCCTCTTCATACATGATTTAAATGGCATCTAATTGTAAGGTTTTATATGCGAAAAATGATTTATTAATAACCAAGAAATGCGATCAATAAATAATAATTCTACTGTATAAAGCTAGAGTTTGGGTTCTGTTATTCTTCCTTTAGAAAATGCTTGCAGAATTTATTTTTTCTTTTTGTTAAGAAGCTAAGAAACTATTGGATCAACCTGGAGTTTGTTTAGGCAACCAAACACAGAAAATACAAGATAATAATATATATTGCAATATCAAAAGGAAACTACAATTTTAGAAATAAAAAAATAAAAATGAAACTACAATAGAACAATATCCTTTACGAGAGAGCTATCTCTCCCATGTCTCAGTGGACAATCCCACTAAAATGATTCCCCTTCTAAGGTCCCTAACTCCCTTATAAATACACCCCAAGATAGCTCCTACTAGTACTCTCACAAAGTCCTAAAAGAAAGTTGCTGTGAAGAAGCTAGTTAGCTATTCGGGTTTTGTTATGCAGTATTGAAGTGAACCTTTATATAAATGGCTTGGCCCTGCAATTGAAATTCAGATTAAAGTACTTGTTTGAGAAGTAGTATTTAGTTATTTTCCTGTACTTACTTTTAAATATGGGTGAAATGCGAAACAGTCGCTTCATGGTCCAGTTTTTCTCAGTTTTTGGACTGTACGAGCTTTTAACTTTCTTTAGCACCTTGTATAGTGTGAGATTACTAATAGGAGTTATGTATGAAATATTAGTAGTCAGGGTATTATTTTTTGGATAAAAAACCAAATGTTCACGGGAAAAAGAATGATAGAACAGGCATACCAAAAATATGAATCTCACAACCAAAGGAAGATAACCTACTAACACAGCCTCCAATCAAGAAAAATGTCAGCGTATTGCATATAATTACAAAAGAGCTTAGAAACGGAGGCACAAAGAGAAATATAAAATCTAATGAGGACTTGAACATCCCCAGAAGACCTTTCCACCTCTCTAAAAATTCTATTATTTCGTATGCCACATAAACTCTCCATTATCAAGAAAGGGAGGAAAAACAGGAAATTGTGTGATTCCTAAACATTCTCTCAGTTTAGCCAAAACCATACGAAACTCCTCGAAAAACCAATTTCACACCTCTGCATCCATCTCACAACGCCAAAGAAGATAGTCAAGGTCCTCACCTGCCCTCCAAGACGGCCTTATTAAAAAGAAACCTTCCTTTTTGGCCCCACCAGTTTGGGATATCTTGGTTAACCCTCCTCAAAACTCTATTGGCCCCACTAGTTTGGGGTATCTTGGTTATAACTTATAAAGAGGGGGTTTAGAGGAAACACAACCCCTCTATTTATGACCAAATGTCTAACAAATTTCTTTAAGTATTTCCTAAAATACCCCTAATGTAAACCCTATCATAACCCTCCCTAAAGAATACTATTATATTGTAGTTGCCTTAATATATTGCAATATATAAGTATCTTCTGTTTTCTTTATTTTGGTCGTTACATATACATATACGATTGTAATGTAAAAACTCTCACAATGGGAAACTGGTGTTCAGTGAAAGACTCATTTCGTAAAGAATTTGGTTTCACTATTTTCCACCATTTATCTTAACTTAATATTGTTCAGATTGGTGGAGGTGAGCTTCCTGAGGAAACAACACTTTTCTGTACTCGTGGTTCGGAAAGGTACATGGGATATAATGTAATTTGGAATGGTTAATCCTTGACATTTTCTCCCTCTTTAACTTTTCTAAAAGATCATTTATCATCATCCTTCTCAACTTACACTTACTATCGTTATTGGTGCTCTATAATCGAATTCAATTTACTTCTGGCTACTTTTCTTGACTCGTGTGTTCTTTATCATTGGCTGCATTGCATGTACATCCAGAAGTCAGGCCTGGAGAAGGGCTCACAAAAACTTCTGTTATTTGTTTTATATCTCATATTTGATTGGAGTTCAACTTTGGTGTTTGTTTCATTTTGGTCCCAACTCTTAAAAAAAATCTTTGAACTTCTAAAAAGTAACCATTTGGATCCTTGAACATTGAAAATGTCTATTCTAACCCTTGAGCTTTTAAGAAATGATCATGTTGGTCTTTACTATATTTTTTCTACCTAATACTCTCTCATCCAACATGTGGGTTTCAATACATTCTATGTTGGCATTTTTTAATACACACTAGAAGCCATATTATCCATATTTTTTGTAAAGAAATTATTTTTATATTTGTATGTCAAAAGTAAAAGATTAAAAATACAATTTTGGTCCATGTACTTTGGCGTTTGCTTCATTTTGGTCTACTTTCAACTTTCCAACTTTAGTTCATGTGCTTTCAGTAAAAATTACTATTGGTCCCTATGATTTTTTTGTTAACTTTTCATTAAAAAAATCACCCTCTCTCTGCTTTCTCTCTATGTTTTAGAAGTATGTTTACATGTGTATTTTCTTGTATTTAAATTATTTTTATTAAATCAACTTCAATAAAAATTAACTTCTCGTCATAGGGACTAGTTTTAAGCTATATTTAAAGTAGGATTAAAATTGGACATATGTAGATAAATTGATTAAAATTGGGCATATGAAAGCAGATAGATCTAAATTGAACAAACTTCAAAGTACAAAGACCAAAATGGTTATTTCTTAGGGTGTGTTTGGGTCCCCATTTATGTAATTAGTCGAGTTGGTTATAACAATCCAACTGATGTTTGGCCCACTATTTTTTATAAACTACCTAAACTTGCGTGCTCGTTTATTTAAACCTTACATATATTATTTGTTGTTACATAATCAGCTTCTCAAACATTGTTTATCATAATCTCTGTTATAATAACTTTTCCTTCAAACACCATTTATAATAACCCATCATTTATCATAACCTTCCGTCTATCATAACAAAACCGGTGCTTCTAACACACCCTTAAATTCAAGGGCTAAAGTAGATATCTTGAATGTTCAAGGAGCCAGGGGACTAAAATGGGATGAACAAAGATTTTAGATATCTTGAAAGTAAAGAATCGAATAACGAATTTAACCTTTTAATTTTATAATGTATAGGCAACTTATTGATTCTGTAATTTCTGTTTCTTCTTAACAGTGCTTTAGAGTTCCTCTCTACCAGTAAACTTTCTAACTTAACAGTGAAGGCAGAGCTTGGTTGCTGCTTGCTTCACAGAAAGGGTAGATTAATTATTGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGAAAGTCCTGATAAGTTATTGCGTACCTCGGTGAAAGGTAGTTACACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGCGCCAAAGCTGTCATAACGAGTGAGGACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAAGAGCTTTGTTCTTTTGGTTTGATGTCGAATACAAGTTGTAATGATTTCCTTGTAATTTATTTGCAATGTGTATCTGTTTCAACTGGTTAGTCCTTAGATATGTTGTTTTATTGGTGATTATTTAACTTGTGTGAGGCCTCTGTTTAGGCTCTTGTCATAATCCTTTTCGCTGCAAAACTTTCTTGTGATCTCTTTTTTTATTCTTAATAATTATAGC

mRNA sequence

GGTTGAGTGAGTTCGGAGCTTTGTGTGGGCTAAGCTATGGCAGCCGAAATTCAAAAGGCCGATTTGAGGTGACAAAGGCCTTAGTTTCTTCGATGGCTGAGACGACGAAGATGGAAGAAAACAAGCAGCAGAGAAAATGGAAAAGGAAGGCCGCTTCGTCTTCTTCTTCTTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATGTTTTCAGCTTCCTTTCTCCTATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGATACTTGGCATGTCATCCTAGGCTGTGGCTGCGTGTAGAACGGTCTATTAAAGATTTATCGGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACGGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACGAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAAACAACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTAGAGTTCCTCTCTACCAGTAAACTTTCTAACTTAACAGTGAAGGCAGAGCTTGGTTGCTGCTTGCTTCACAGAAAGGGTAGATTAATTATTGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGAAAGTCCTGATAAGTTATTGCGTACCTCGGTGAAAGGTAGTTACACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGCGCCAAAGCTGTCATAACGAGTGAGGACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAAGAGCTTTGTTCTTTTGGTTTGATGTCGAATACAAGTTGTAATGATTTCCTTGTAATTTATTTGCAATGTGTATCTGTTTCAACTGGTTAGTCCTTAGATATGTTGTTTTATTGGTGATTATTTAACTTGTGTGAGGCCTCTGTTTAGGCTCTTGTCATAATCCTTTTCGCTGCAAAACTTTCTTGTGATCTCTTTTTTTATTCTTAATAATTATAGC

Coding sequence (CDS)

ATGGCTGAGACGACGAAGATGGAAGAAAACAAGCAGCAGAGAAAATGGAAAAGGAAGGCCGCTTCGTCTTCTTCTTCTTCGTCGGCTCGAATCAACAATTTGGACGATGGCTGTTTAATGCATGTTTTCAGCTTCCTTTCTCCTATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGATACTTGGCATGTCATCCTAGGCTGTGGCTGCGTGTAGAACGGTCTATTAAAGATTTATCGGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACGGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACGAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAAACAACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTAGAGTTCCTCTCTACCAGTAAACTTTCTAACTTAACAGTGAAGGCAGAGCTTGGTTGCTGCTTGCTTCACAGAAAGGGTAGATTAATTATTGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGAAAGTCCTGATAAGTTATTGCGTACCTCGGTGAAAGGTAGTTACACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGCGCCAAAGCTGTCATAACGAGTGAGGACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAAGAGCTTTGTTCTTTTGGTTTGATGTCGAATACAAGTTGTAA

Protein sequence

MAETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVIYARRALFFWFDVEYKL

Homology

[Close]

BLAST of Sed0001833 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 4.8e-129
Identity = 236/256 (92.19%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEENK QRKWKRK  SSSS S   +N+LDDGCLMH+FSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 21  MEENK-QRKWKRKGTSSSSPS---VNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 80

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 81  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 140

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 141 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 200

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT SPDKLL +SVKG YT GVSVS TRIEGGAKAV+TSEDL LQHVRVI
Sbjct: 201 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 260

Query: 247 YARRALFFWFDVEYKL 263
           YAR ALFFWFDVEYKL
Sbjct: 261 YARTALFFWFDVEYKL 272

[Close]

BLAST of Sed0001833 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 469.2 bits (1206), Expect = 2.4e-128
Identity = 237/260 (91.15%), Postives = 245/260 (94.23%), Query Frame = 0


Query: 3   ETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRW 62
           E   ++E K QRKWKRK  +S SSSSARINNLDDGCLMH+FSFLSPIPDRYNTALVCHRW
Sbjct: 6   EQVSVQEIK-QRKWKRK-GTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRW 65

Query: 63  RYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 122
           RYLACHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP
Sbjct: 66  RYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 125

Query: 123 LCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 182
           LCLIGGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVL
Sbjct: 126 LCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 185

Query: 183 QCESNPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQH 242
           QCESNPLDYLSCPIVC+ +PDKLL +SVKG YTDGVSVSQTRIEGGAKAV+TSEDLALQH
Sbjct: 186 QCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQH 245

Query: 243 VRVIYARRALFFWFDVEYKL 263
           VRVIYAR ALFFWFDVEY L
Sbjct: 246 VRVIYARTALFFWFDVEYNL 263

[Close]

BLAST of Sed0001833 vs. NCBI nr
Match: XP_022966937.1 (F-box protein SKIP5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 469.2 bits (1206), Expect = 2.4e-128
Identity = 235/262 (89.69%), Postives = 245/262 (93.51%), Query Frame = 0


Query: 1   MAETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCH 60
           MAET  ME+NK QRKWKRK    + SSSARINNLDDGCLMH+FSFLSPIPDRYNTALVCH
Sbjct: 1   MAETPTMEDNK-QRKWKRK---GTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCH 60

Query: 61  RWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQIT 120
           RWRYLACHPRLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQIT
Sbjct: 61  RWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQIT 120

Query: 121 KPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGC 180
           KPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGC
Sbjct: 121 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGC 180

Query: 181 VLQCESNPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLAL 240
           VLQCESNPLDYLSCPIVCT SPDKL  +SVKG Y DGVSVSQTRIEGGAKA++TSEDLAL
Sbjct: 181 VLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLAL 240

Query: 241 QHVRVIYARRALFFWFDVEYKL 263
           +HVRVIYAR ALFFWFDVE+KL
Sbjct: 241 RHVRVIYARTALFFWFDVEHKL 258

[Close]

BLAST of Sed0001833 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 468.0 bits (1203), Expect = 5.3e-128
Identity = 234/256 (91.41%), Postives = 241/256 (94.14%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEENK QRKWKRK  SSSS S   +N+LDDGCLMH+FSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 21  MEENK-QRKWKRKGTSSSSPS---VNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 80

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 81  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 140

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 141 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 200

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT SPDKLL +SVKG YT GVSVS TRIEGGAKAV+TSEDL LQHVRVI
Sbjct: 201 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 260

Query: 247 YARRALFFWFDVEYKL 263
           YAR AL FWFDVEYKL
Sbjct: 261 YARTALLFWFDVEYKL 272

[Close]

BLAST of Sed0001833 vs. NCBI nr
Match: XP_038889674.1 (F-box protein SKIP5 [Benincasa hispida])

HSP 1 Score: 461.8 bits (1187), Expect = 3.8e-126
Identity = 232/256 (90.62%), Postives = 239/256 (93.36%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEE+K QRKWKRK  S+SS S   INNLDDGCLMH+FSFLSP+PDRYNTALVCHRWRYLA
Sbjct: 16  MEESK-QRKWKRKGTSTSSPS---INNLDDGCLMHIFSFLSPMPDRYNTALVCHRWRYLA 75

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 76  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 135

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES
Sbjct: 136 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 195

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT  PDKLL +SV   YT GVSVS TRIEGGAKAV+T +DLALQHVRVI
Sbjct: 196 NPLDYLSCPIVCTACPDKLLPSSVSRGYTHGVSVSHTRIEGGAKAVLTGDDLALQHVRVI 255

Query: 247 YARRALFFWFDVEYKL 263
           YAR ALFFWFDVEYKL
Sbjct: 256 YARTALFFWFDVEYKL 267

[Close]

BLAST of Sed0001833 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.5e-93
Identity = 176/268 (65.67%), Postives = 206/268 (76.87%), Query Frame = 0


Query: 3   ETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRW 62
           +  K  E   + K K++    S +S   +NNLDDGCLMH+ SFLSPIPDRYNTALVCHRW
Sbjct: 10  DNKKHPERIVESKMKKRMKPYSLTS---LNNLDDGCLMHILSFLSPIPDRYNTALVCHRW 69

Query: 63  RYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 122
           RYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KP
Sbjct: 70  RYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKP 129

Query: 123 LCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 182
           LCL+GGGE+P+ETTL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL IDGCVL
Sbjct: 130 LCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVL 189

Query: 183 QCESNPLDYLSCPIVCTESPDK----LLRTSVKGSYT-----DGVSVSQTRIEGGAKAVI 242
           QCE+NPLD+LSCPIV T   +     L    VK + T     + V+V QTRIEGGAKAV 
Sbjct: 190 QCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVS 249

Query: 243 TSEDLALQHVRVIYARRALFFWFDVEYK 262
           T  DL LQ VRV+Y++  L+FWFDV+Y+
Sbjct: 250 TRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of Sed0001833 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.3e-129
Identity = 236/256 (92.19%), Postives = 242/256 (94.53%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEENK QRKWKRK  SSSS S   +N+LDDGCLMH+FSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 21  MEENK-QRKWKRKGTSSSSPS---VNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 80

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 81  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 140

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 141 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 200

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT SPDKLL +SVKG YT GVSVS TRIEGGAKAV+TSEDL LQHVRVI
Sbjct: 201 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 260

Query: 247 YARRALFFWFDVEYKL 263
           YAR ALFFWFDVEYKL
Sbjct: 261 YARTALFFWFDVEYKL 272

[Close]

BLAST of Sed0001833 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 235/262 (89.69%), Postives = 245/262 (93.51%), Query Frame = 0


Query: 1   MAETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCH 60
           MAET  ME+NK QRKWKRK    + SSSARINNLDDGCLMH+FSFLSPIPDRYNTALVCH
Sbjct: 1   MAETPTMEDNK-QRKWKRK---GTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCH 60

Query: 61  RWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQIT 120
           RWRYLACHPRLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQIT
Sbjct: 61  RWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQIT 120

Query: 121 KPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGC 180
           KPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGC
Sbjct: 121 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGC 180

Query: 181 VLQCESNPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLAL 240
           VLQCESNPLDYLSCPIVCT SPDKL  +SVKG Y DGVSVSQTRIEGGAKA++TSEDLAL
Sbjct: 181 VLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLAL 240

Query: 241 QHVRVIYARRALFFWFDVEYKL 263
           +HVRVIYAR ALFFWFDVE+KL
Sbjct: 241 RHVRVIYARTALFFWFDVEHKL 258

[Close]

BLAST of Sed0001833 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 237/260 (91.15%), Postives = 245/260 (94.23%), Query Frame = 0


Query: 3   ETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRW 62
           E   ++E K QRKWKRK  +S SSSSARINNLDDGCLMH+FSFLSPIPDRYNTALVCHRW
Sbjct: 6   EQVSVQEIK-QRKWKRK-GTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRW 65

Query: 63  RYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 122
           RYLACHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP
Sbjct: 66  RYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 125

Query: 123 LCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 182
           LCLIGGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLIIDGCVL
Sbjct: 126 LCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 185

Query: 183 QCESNPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQH 242
           QCESNPLDYLSCPIVC+ +PDKLL +SVKG YTDGVSVSQTRIEGGAKAV+TSEDLALQH
Sbjct: 186 QCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQH 245

Query: 243 VRVIYARRALFFWFDVEYKL 263
           VRVIYAR ALFFWFDVEY L
Sbjct: 246 VRVIYARTALFFWFDVEYNL 263

[Close]

BLAST of Sed0001833 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.6e-128
Identity = 234/256 (91.41%), Postives = 241/256 (94.14%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEENK QRKWKRK  SSSS S   +N+LDDGCLMH+FSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 21  MEENK-QRKWKRKGTSSSSPS---VNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 80

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 81  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 140

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 141 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 200

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT SPDKLL +SVKG YT GVSVS TRIEGGAKAV+TSEDL LQHVRVI
Sbjct: 201 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 260

Query: 247 YARRALFFWFDVEYKL 263
           YAR AL FWFDVEYKL
Sbjct: 261 YARTALLFWFDVEYKL 272

[Close]

BLAST of Sed0001833 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.6e-128
Identity = 234/256 (91.41%), Postives = 241/256 (94.14%), Query Frame = 0


Query: 7   MEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRWRYLA 66
           MEENK QRKWKRK  SSSS S   +N+LDDGCLMH+FSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 21  MEENK-QRKWKRKGTSSSSPS---VNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 80

Query: 67  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 126
           CHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 81  CHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 140

Query: 127 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 186
           GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 141 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 200

Query: 187 NPLDYLSCPIVCTESPDKLLRTSVKGSYTDGVSVSQTRIEGGAKAVITSEDLALQHVRVI 246
           NPLDYLSCPIVCT SPDKLL +SVKG YT GVSVS TRIEGGAKAV+TSEDL LQHVRVI
Sbjct: 201 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 260

Query: 247 YARRALFFWFDVEYKL 263
           YAR AL FWFDVEYKL
Sbjct: 261 YARTALLFWFDVEYKL 272

[Close]

BLAST of Sed0001833 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-94
Identity = 176/268 (65.67%), Postives = 206/268 (76.87%), Query Frame = 0


Query: 3   ETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRW 62
           +  K  E   + K K++    S +S   +NNLDDGCLMH+ SFLSPIPDRYNTALVCHRW
Sbjct: 10  DNKKHPERIVESKMKKRMKPYSLTS---LNNLDDGCLMHILSFLSPIPDRYNTALVCHRW 69

Query: 63  RYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKP 122
           RYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KP
Sbjct: 70  RYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKP 129

Query: 123 LCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVL 182
           LCL+GGGE+P+ETTL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL IDGCVL
Sbjct: 130 LCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVL 189

Query: 183 QCESNPLDYLSCPIVCTESPDK----LLRTSVKGSYT-----DGVSVSQTRIEGGAKAVI 242
           QCE+NPLD+LSCPIV T   +     L    VK + T     + V+V QTRIEGGAKAV 
Sbjct: 190 QCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVS 249

Query: 243 TSEDLALQHVRVIYARRALFFWFDVEYK 262
           T  DL LQ VRV+Y++  L+FWFDV+Y+
Sbjct: 250 TRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of Sed0001833 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-30
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 3   ETTKMEENKQQRKWKRKAASSSSSSSARINNLDDGCLMHVFSFLSPIPDRYNTALVCHRW 62
           +  K  E   + K K++    S +S   +NNLDDGCLMH+ SFLSPIPDRYNTALVCHRW
Sbjct: 10  DNKKHPERIVESKMKKRMKPYSLTS---LNNLDDGCLMHILSFLSPIPDRYNTALVCHRW 69

Query: 63  RYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAAR 100
           RYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AAR
Sbjct: 70  RYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of Sed0001833 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142419.1	4.8e-129	92.19	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_022139176.1	2.4e-128	91.15	F-box protein SKIP5 [Momordica charantia]	[more]
XP_022966937.1	2.4e-128	89.69	F-box protein SKIP5 isoform X1 [Cucurbita maxima]	[more]
XP_008446937.1	5.3e-128	91.41	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_038889674.1	3.8e-126	90.63	F-box protein SKIP5 [Benincasa hispida]	[more]

BLAST of Sed0001833 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	1.5e-93	65.67	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of Sed0001833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7	2.3e-129	92.19	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A6J1HPC3	1.2e-128	89.69	F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ...	[more]
A0A6J1CBW5	1.2e-128	91.15	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A5A7SZI1	2.6e-128	91.41	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	2.6e-128	91.41	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]

BLAST of Sed0001833 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	1.1e-94	65.67	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	1.9e-30	65.98	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 54..236
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 54..236
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 60..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001833.1	Sed0001833.1	mRNA
Sed0001833.2	Sed0001833.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding