Sed0001555 (gene) Chayote v1

Overview


Name	Sed0001555
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding KH domain-containing protein
Location	LG11: 6410578 .. 6416732 (+)
RNA-Seq Expression	Sed0001555
Synteny	Sed0001555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACAAGGGAAAAAAAAAGAAAAGAAAAGGGGAAAGATTGCATTTGCTTTGTTTCTGTATCCTTCGTTCTCGTAAAACCTCTGGAAGTTGTAACCCTAACTGAACCTTACTTCATCTTCTTCCATGGCAACCAACACAACAACTACAGAATCCGACCTCAATTCCTCTCTACCTGCTGCAGAATCCGACCAAGACTACTCATCGGCTCCGCCCTCCGACGACAAGTGGCCCGGATGGCCCGGCGACTGCGTCTTCCGCCTCGTTGTGCCGGTCGTCAAAGTCGGCAGCATCATCGGCCGCAAGGGCGATCTTATCAGGAAGACGTGCGAGGAAACTAGGGCCAGAATTCGTGTCCTCGAAGGTGCTGTTGGCACTCCTGATCGCGTTGTGAGTGTTCGCTTTTTTTATCCTTTGAGCATTTTATGGCAGCTGATTGTTTTGAATTAGAAATGGCTTTGATGGTTACAGACTAGTTGAATGAATCTCTATCTTTGTATTGGTTTTACCGAATGGGTGAGTTGGTTGCGCGTTGGTTGTTTGGATGGATGGCAATCTATTTTAACTCCACGGTCACGAGTTTGATCATAAAAATTGGTATTTGGCTCTCATATTATGTGAGAGTAATAGTGTCCTTTATGTAGGGTTTGTTGTTCCCTCCCCCGATTTGAATCTTTGGATTGGTTTATTTGTTATGTTTGGTTACTCGACACGGTTTTATGTCATAGTACTGTCTTGCTAGTTATTTGTCAACCTATAATTAGACTGGATGGAACGATTCCTAGTATAAAAAAAAATCAAGGCTGTTCATCCATCTTTGGCTGGTTTCATTAATTTTATGCTAGTAAGTCTCATAAAAAGTGAAGACTTAAAGCATATTCCATGGTGGTGGCCCCCAAGGGGTGGTGCAATGGTTGAAGATTTGGGCTTTGAAGGTATGCTCCTTTCAAGGTCCTAAGTTCGAGACTCACATGTGACATTACTCCTTTGATGCTTAGGGATGGGCGTGGTTACCCTAGTTTCAAAAAAAAAGAAAAAATTCAATGGTGGTGTAAGGCTCTTTAAACCCGAAGTGGGAGTACGACTTAAGAGGCAAAAGTGTTTTTGTTTTATGTAATTTTTGTCATGTCATGCGTAACGATTATGGTTAGAGTTCTCTCTCTTTTTTTTTTGCATAATTAGTTCATGTTTTATTTGGACTCCTTTTGTTGACTTGTCTTTTCGTATGCCATGGTATTCTTTCAATTTCCTTATTGAAACCTCCATCAAAACAATATTAAGGCTAGAGGCAAACTATGAGAGTGATCTAAATCATGTGTTTTTGTATAGGTTGATTCTAACTTCATTTTGTCTACTGACCAGGCACTTCTTAGTTCCTGGTTTTCTTTCAATTTTATAAAGTGGTAATGCTGTAATGCATACTTGGTTTATTAGGAATATGGATTTAATACTTGAGGAGTGCCCAAATGATTTTGAATAGTTTCAATTTCAATGATGAACCCTAATGTATAGGGGGTATAACCTTTTTGTTGGGGAGGTGGTTGCATTTACCCTCGAACTTTTCTACGCTTCACTTTCATTTGCAAGATCTATTGGATGCATTCTTGTACAGTTCTTTTTAAGTATTAGACTTAGTTGAAACTTCTTCATTCTATTTTAATGACTAGTGTTTACTTTAGGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGAACCTCTTTCCCCTGCAATGGATGCAGTTATAAGAATCTTCAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCTTTCTGTTCAATTCGGTTACTGGTGGCATCGACTCAAGCAATCAATCTAATTGGAAAGCAGGGCTTGTCAATCAAATCTATACAGGATAGTACAGGAGCTTCTGTGAGAGTATTATCAGGAGGTATGCTTTGATTTGTTTTATTTCACTTGTAGGCTATTATACTGATTGATTTTGAACTTAGCTATTTTCAAAGATCATGAAATCTACCAAACATCTAAATTGTGAAGCCATCAGAAAGGCTATTATTGAGGGAAGAAAGACTTTAAGCTCACTCTTCAAAACCTCACTTTAATGGAAGGATAATTGTAAAGAATAATAATGCCCCGCAATAGCCAAGAAAACCAACAGAAACCAACCAAAAAAAAAGTGTTATGGAGCTTCCAATCTCTCCCACAAGTATGATACAATGCTCGACTATACAAGGATAGTAACTAAGCCTATTTATAGAACAGAAGTATAGCTATCAATCACAACTAACTAACTAACTGTCTCCTAACCAAATTAGTTAGAATCGGTAGAAGGGTTAATTCTATTCCTCCTCTTATGCACATGTCATATTGGGGGTCTATCAGTCCTTGAAGAGTATTCTTGTTGAGGATGACAACCCCTTAAGGAATCTCTACACTGGTTTGATATTGTCCATTTTGGGCATAAGCTCTCATGGTTTTGTTTTTTTGTTTCACCCAAAAGGCTTCATACCAATGGAGATGGTTGTTCTCTCTTATATACCCATGATCTACCCCTTGGCTAACCAATGCGATACTACATTGTTTTTGTACTCCCAACCTCTTCCCCTTGAACAAAGTACCACATATAAGCCTCCCTCCCTGAATAGTCATTTTTTGAATTTACTTGCATTATTTATACTCACAGAAACCTCTCTCCCCAAGGAAACCACTTCACATGGGCCTCTCACCACTTGTCTCCCCTTAATTTCCTCTTTTATCCTTCTAGAAGATTACTGTATAAATGGGGGTGGGGGTCTAACACAGTCCCCCGATTCCCCACCCTCACCCAAATCAAGTTTCTGCAACTGCAACCACACGAGCCATTGACTTTTAGAATTCCAAGGACGTGGGATTTATATTCAGATAAAATCACCTAATATTTTAATGGTCTAATTGAAATAAAGTCATTGCCCAATTTATGTTTACCTGGCTTGTCTTAACCTTAGAGCTTGCGTTAGGGATATAACACCACTGGAAATCTGCAATTGTTTTTTGAGATGTACTTGCCTCAATCCCTTAGGGGCAGCTTTGTTCTGTTGAATTTTATCATAATTCATCATTACTTTATCAAAGTTGCTTCTAGAAAAAGGTTGAGTCTAGAAATATGATTTTGTGTGGTGGGAGTGCAACTAAGATTCATAACGTTTTTGGGTTTTGGGGTACTAGCATTGGGAAAATTGATGTCTGAGGACCTTTTGCTTAATGAGACCTCACCTTTCTTCTCAATAAAAGCTTGGTTTTTATAAAAACAGGAGACCACATTTCTAGATATCTTTTCTTTTTGGTGCATTATATGCAAAAGTGTTAATCAGACTGTGTAAATCTTGTCATTTACGTTGCAATTATTTTGCTTACTACACTCTCGCTTCTCTTTTAACCAATTGGGAAAGCTTTTTGTAATCCCATGCATTTCCTTTCTTTTTTTTTCTTTGTAAATTTCATACATGAATGAATTTTTTCTTATAAAAAAATGTAAAAAATGTCAATCATCTCTTTACAATTGGAGGATGTAGCATTGGTTCATTCCCGAGTTTTGGATATTATCATGTCATCTTGAAGAACCGTACTCCATCTGATTCACTAACATCTCTGTTGCTGATCTGATACATGGTAAAGATGACCTAAAACTAAAAGTCCATAGCAATTGCTTAGATAAAATAAATATTGTTTTTTTATTTATCTCAATTATATTGCTGTAAATCAAAGTGACCAAGGATGATGACTATTAACTTCAAGCCTTGAACTTTGGTCAGCCATGGAAGCTACTAATAATGTCATGAGATAATTATAGAATTCCTGCTTCATTCATTTGTCTGTGAGAACCCTTTGAACTTTCCCGTACTGATCTACATTTGATGCTTGCGCCTTGCAGAGGAAATGCCATTCTATGCTGGTGCAGACGAGAGAATGGTGGAATTGCAGGGAGAATCCTTTAAAGTTCTCAAGGCTCTAGAGGCCGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCATACTGTTCTTCCTCTGTTTGAAAAGAGTGTAAGCTTTTTTTCTTCTTAGGTCTATGTTCAACCTTTTCTTTTTACTATATTTTAGGACAGCTAATGTAGTGTTGCTACTTTTCTTTTAGTTCAATACACCAGCCTCACAAGATCGACAATCGGAAACCTGGGCTGACAAGTCCTCACTTCTTACTGCATCTCAAAGTGTAGTCTCCACCGAGTATGCTACATCTAGTAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTCCTTCCTCTGGTATTTCTCTCTATGGACAAGATCGAGCACTTCCTGCAATTCGACCATCAGGTGCTGCTCGCTCCGGTGTGCCTATTGTCACTCAGGTTGGTACACATAATTATTGGTAGAATGAAATGGTCTATGTTGACTTGGCCCTTAGCAAGGTAGCAAACTATTTCACGTACTTCATAATCAATAAGACCAATCCTCATTGCATGTCCATTTTTTGGACTTGAGGTCCAGGCAAGCTAGAAGCTTGTGTAATCTTTTCACATCCATCATGTCCTGCAAACACTAGGTCCAAAATGTTTAGTATGTTGTGTACAAGTATAATTTAGCATAATCAGTGTTATAAAAGGTTCGATCAGGTGTGCCTAAGTTCAAGGCGCAGGTCTAGCACCTCATATTGTGCCTTCAATGGCTCGCCTTGACTATGCGAGTCTTAGGTAAAAAGGCGTGTGCAAAATCAAGTTTCACTAATCCTAAATGCAAAATATCCTTATGTTTGAGTTTGTTTGTTGTTTTTTATCAACTAAAAAAATATCCTTCAGCTTTTGAAAACACTGAGCATAATGTTGAATGGAGGCAATGGAGTTGCAGAGTTTTTGTCTTTGTTATCTCTGACCATGTCACCTATTTGTGGTTCCTGTCAGGTTACTCAGACAATGCAGATCCCCTTATCTTATGCTGAGGATATCATTGGAGTTGGAGGATCAAATATTGCATTCATCAGACGCAATAGTGGTGCCGTCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCATTGTGGAAATAAAAGGCACTTCACCACAAGTTCAGATGGCTCAAGAATTAATTCAGGTAATATTCAACACCTCGGGAGATTTTTGTGATCAAAATACGCAATTGTAAAGTAGTTTCTTTACCGAGAGCCTTTTTGTCGTTGTATCTACCTTATCAGTTCAGTATTTTCTATATTGTTCCTAGTTTCAATAGGCACTTTGCAACTCTTTCATTCATCCATGAAATGATTTGTTCCTATACCAAGAAAACTCCCCCATTTCTTATGTGAATTTTTTTCTTATTTGCTCTGATTCCCAAGAGATCAACTCAAAGGGCAATTCATAGGGCCAGCGAATGTTTACATATTTATGATCGTTTTCTTTCTTGCACTTATAGGAAGCCTTGAGTGGCCCTAAGGAACCAGTAATAAGTAGCAGCTATGGCAGGTATGACACGGCAGGGTTGAGGTCATCGTACTCCCAATTGACTGCTTCGGATTCATCTTACGCCCAATTGGCTGCTTCGGATTCATCTTATGCCCAATTGGCTTCTTTGGATTCATCTTACGCCCAGTTGGCTGCTTCGGATTCAACTTACGCCCAATTGGCTGCTTCGGGTCCATCTTACTCCCAACTGGCTGCTCCGGGTTCATCATACACTTCCTCTTTATCATCACAATCATATGGTGCATATGGGACCTCTGGCTTAGGAGGCTACAGTACCTTCAGGCTCTGAATTGATTGATCTGCAGATTCGTACTCACTCGGATTTGATCTGCTTCGGGATTAATTGTCAGTAGGATGAATGAATTATGTTTGAATGTAGTCCTCTTGTAAAGTCAGCCTAAAATAGCTGAAAAAGAAACGTTTTTACCCTCTCTGCCATATTGAAACTGATTCAGTTGGGTAGAGATTTGTGTTGTGTTTTATATCTTCCTTTTCCTTTTTCTTTTTGTGTTAATGTATTTGTTTCTGAGTAGGCTTTTTATTAGTCGCTTCAGGTCATCAAATTTTCATAACTTTTTTCCCCCCTTGAAGAATTGGAAGGATAATACCAAGAATTCACATATACCTATTTTTATTTAGGTTAAAATATCA

mRNA sequence

GCACAAGGGAAAAAAAAAGAAAAGAAAAGGGGAAAGATTGCATTTGCTTTGTTTCTGTATCCTTCGTTCTCGTAAAACCTCTGGAAGTTGTAACCCTAACTGAACCTTACTTCATCTTCTTCCATGGCAACCAACACAACAACTACAGAATCCGACCTCAATTCCTCTCTACCTGCTGCAGAATCCGACCAAGACTACTCATCGGCTCCGCCCTCCGACGACAAGTGGCCCGGATGGCCCGGCGACTGCGTCTTCCGCCTCGTTGTGCCGGTCGTCAAAGTCGGCAGCATCATCGGCCGCAAGGGCGATCTTATCAGGAAGACGTGCGAGGAAACTAGGGCCAGAATTCGTGTCCTCGAAGGTGCTGTTGGCACTCCTGATCGCGTTGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGAACCTCTTTCCCCTGCAATGGATGCAGTTATAAGAATCTTCAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCTTTCTGTTCAATTCGGTTACTGGTGGCATCGACTCAAGCAATCAATCTAATTGGAAAGCAGGGCTTGTCAATCAAATCTATACAGGATAGTACAGGAGCTTCTGTGAGAGTATTATCAGGAGAGGAAATGCCATTCTATGCTGGTGCAGACGAGAGAATGGTGGAATTGCAGGGAGAATCCTTTAAAGTTCTCAAGGCTCTAGAGGCCGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCATACTGTTCTTCCTCTGTTTGAAAAGAGTTTCAATACACCAGCCTCACAAGATCGACAATCGGAAACCTGGGCTGACAAGTCCTCACTTCTTACTGCATCTCAAAGTGTAGTCTCCACCGAGTATGCTACATCTAGTAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTCCTTCCTCTGGTATTTCTCTCTATGGACAAGATCGAGCACTTCCTGCAATTCGACCATCAGGTGCTGCTCGCTCCGGTGTGCCTATTGTCACTCAGGTTACTCAGACAATGCAGATCCCCTTATCTTATGCTGAGGATATCATTGGAGTTGGAGGATCAAATATTGCATTCATCAGACGCAATAGTGGTGCCGTCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCATTGTGGAAATAAAAGGCACTTCACCACAAGTTCAGATGGCTCAAGAATTAATTCAGGAAGCCTTGAGTGGCCCTAAGGAACCAGTAATAAGTAGCAGCTATGGCAGGTATGACACGGCAGGGTTGAGGTCATCGTACTCCCAATTGACTGCTTCGGATTCATCTTACGCCCAATTGGCTGCTTCGGATTCATCTTATGCCCAATTGGCTTCTTTGGATTCATCTTACGCCCAGTTGGCTGCTTCGGATTCAACTTACGCCCAATTGGCTGCTTCGGGTCCATCTTACTCCCAACTGGCTGCTCCGGGTTCATCATACACTTCCTCTTTATCATCACAATCATATGGTGCATATGGGACCTCTGGCTTAGGAGGCTACAGTACCTTCAGGCTCTGAATTGATTGATCTGCAGATTCGTACTCACTCGGATTTGATCTGCTTCGGGATTAATTGTCAGTAGGATGAATGAATTATGTTTGAATGTAGTCCTCTTGTAAAGTCAGCCTAAAATAGCTGAAAAAGAAACGTTTTTACCCTCTCTGCCATATTGAAACTGATTCAGTTGGGTAGAGATTTGTGTTGTGTTTTATATCTTCCTTTTCCTTTTTCTTTTTGTGTTAATGTATTTGTTTCTGAGTAGGCTTTTTATTAGTCGCTTCAGGTCATCAAATTTTCATAACTTTTTTCCCCCCTTGAAGAATTGGAAGGATAATACCAAGAATTCACATATACCTATTTTTATTTAGGTTAAAATATCA

Coding sequence (CDS)

ATGGCAACCAACACAACAACTACAGAATCCGACCTCAATTCCTCTCTACCTGCTGCAGAATCCGACCAAGACTACTCATCGGCTCCGCCCTCCGACGACAAGTGGCCCGGATGGCCCGGCGACTGCGTCTTCCGCCTCGTTGTGCCGGTCGTCAAAGTCGGCAGCATCATCGGCCGCAAGGGCGATCTTATCAGGAAGACGTGCGAGGAAACTAGGGCCAGAATTCGTGTCCTCGAAGGTGCTGTTGGCACTCCTGATCGCGTTGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGAACCTCTTTCCCCTGCAATGGATGCAGTTATAAGAATCTTCAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCTTTCTGTTCAATTCGGTTACTGGTGGCATCGACTCAAGCAATCAATCTAATTGGAAAGCAGGGCTTGTCAATCAAATCTATACAGGATAGTACAGGAGCTTCTGTGAGAGTATTATCAGGAGAGGAAATGCCATTCTATGCTGGTGCAGACGAGAGAATGGTGGAATTGCAGGGAGAATCCTTTAAAGTTCTCAAGGCTCTAGAGGCCGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCATACTGTTCTTCCTCTGTTTGAAAAGAGTTTCAATACACCAGCCTCACAAGATCGACAATCGGAAACCTGGGCTGACAAGTCCTCACTTCTTACTGCATCTCAAAGTGTAGTCTCCACCGAGTATGCTACATCTAGTAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTCCTTCCTCTGGTATTTCTCTCTATGGACAAGATCGAGCACTTCCTGCAATTCGACCATCAGGTGCTGCTCGCTCCGGTGTGCCTATTGTCACTCAGGTTACTCAGACAATGCAGATCCCCTTATCTTATGCTGAGGATATCATTGGAGTTGGAGGATCAAATATTGCATTCATCAGACGCAATAGTGGTGCCGTCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCATTGTGGAAATAAAAGGCACTTCACCACAAGTTCAGATGGCTCAAGAATTAATTCAGGAAGCCTTGAGTGGCCCTAAGGAACCAGTAATAAGTAGCAGCTATGGCAGGTATGACACGGCAGGGTTGAGGTCATCGTACTCCCAATTGACTGCTTCGGATTCATCTTACGCCCAATTGGCTGCTTCGGATTCATCTTATGCCCAATTGGCTTCTTTGGATTCATCTTACGCCCAGTTGGCTGCTTCGGATTCAACTTACGCCCAATTGGCTGCTTCGGGTCCATCTTACTCCCAACTGGCTGCTCCGGGTTCATCATACACTTCCTCTTTATCATCACAATCATATGGTGCATATGGGACCTCTGGCTTAGGAGGCTACAGTACCTTCAGGCTCTGA

Protein sequence

MATNTTTTESDLNSSLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISSSYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAASGPSYSQLAAPGSSYTSSLSSQSYGAYGTSGLGGYSTFRL

Homology

[Close]

BLAST of Sed0001555 vs. NCBI nr
Match: XP_022938096.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 664.1 bits (1712), Expect = 9.3e-187
Identity = 375/519 (72.25%), Postives = 399/519 (76.88%), Query Frame = 0


Query: 1   MATNTTT----TESD-LNSSLPAA--------------------ESDQDYSSAPPSDD-- 60
           MATNTTT    T++D LNSS   A                     S+QDY SAP SD   
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGR+GDLI+K CEETRARIRVL+GA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEEPE P SPAMDAV+R+FKRVSGFSENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAG DERMVELQGE+ KVLKALEAVVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLKVLKALEAVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+++WADKSSLL+ASQSV+STEY  SSKRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTDSWADKSSLLSASQSVISTEYPPSSKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYG DR LPAIR SG  RSGVPIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA+SGPKEPV SS
Sbjct: 361 GGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLGASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. NCBI nr
Match: XP_004149510.2 (RNA-binding KH domain-containing protein PEPPER isoform X1 [Cucumis sativus] >KGN61176.1 hypothetical protein Csa_021288 [Cucumis sativus])

HSP 1 Score: 660.2 bits (1702), Expect = 1.3e-185
Identity = 373/519 (71.87%), Postives = 397/519 (76.49%), Query Frame = 0


Query: 1   MATNTTTTE-------SDLNSSLP---AAE---------------SDQDYSSAPPSDD-- 60
           MATNTTT         + L+S+LP   AAE               S+QDYSS PPSD   
Sbjct: 1   MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSDSAA 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGRKGDLI+K CEETRARIRVL+GA
Sbjct: 61  HEPSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEE E PLSPAMDAVIR+FKRVSG SENEDEAKASFCSIRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAGADERMVELQGES KVLKALE VVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+ETWADKSSLLTASQS++S EYA S+KRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRE H DSHI SSGISLYGQDR LP IR SG  RSG PIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA++ PKEPV SS
Sbjct: 361 GGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SS+                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLAASGSSFT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. NCBI nr
Match: XP_023538336.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 659.8 bits (1701), Expect = 1.8e-185
Identity = 373/519 (71.87%), Postives = 396/519 (76.30%), Query Frame = 0


Query: 1   MATNTTT----TESDLNSSLP----------------AAESD-----QDYSSAP------ 60
           MATN TT    T++D  +S P                 AESD     QDY SAP      
Sbjct: 1   MATNATTENGSTDADALNSSPQLACEAAAEPDSTEAGGAESDIDPSNQDYLSAPASDYVP 60

Query: 61  --------PSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                    SD KWPGWPGDCVFR++VPVVKVGSIIGR+GDLI+K CEETRARIRVL+GA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRIIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEEPE PLSPAMDAV+RIFKRVSGFSENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAG DERMVELQGE+ KVLKALEAVVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLKVLKALEAVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ++ WADKSSLL+ASQSV+S EY  SSKRESLF 
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTDAWADKSSLLSASQSVISNEYPPSSKRESLFF 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYG DR LPAIR SG  RSGVPIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA+SGPKEPV SS
Sbjct: 361 GGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLGASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. NCBI nr
Match: TYK03085.1 (RNA-binding KH domain-containing protein PEPPER [Cucumis melo var. makuwa])

HSP 1 Score: 657.9 bits (1696), Expect = 6.7e-185
Identity = 372/519 (71.68%), Postives = 394/519 (75.92%), Query Frame = 0


Query: 1   MATNTTT----------TESDLNSSLPAAESD---------------QDYSSAPPSDD-- 60
           MATNTTT           +S    SL AAE+D               QDYSS PPSD   
Sbjct: 1   MATNTTTDNGSTDAIANPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSDSAA 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGRKGDLI+K CEETRARIRVL+GA
Sbjct: 61  HEPSSHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEE + PLSPAMDAVIR+FKRVSG SENEDEAKASF SIRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAGADERMVELQGES KVLKALE VVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+ETWADKSSLLTASQS++S EY  S+KRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYPPSTKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYGQDR LP IR SG  RSG PIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA++ PKEPV SS
Sbjct: 361 GGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLAASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. NCBI nr
Match: XP_038890982.1 (RNA-binding KH domain-containing protein PEPPER-like [Benincasa hispida])

HSP 1 Score: 657.9 bits (1696), Expect = 6.7e-185
Identity = 364/493 (73.83%), Postives = 387/493 (78.50%), Query Frame = 0


Query: 2   ATNTTTTESDLNSSLPAAESDQDYSSAPPSDD--------------KWPGWPGDCVFRLV 61
           +T    TESD++       S++DY S P SD               KWPGWPGDCVFRL+
Sbjct: 36  STEAGGTESDID------PSNEDYLSVPASDSAAYEGPNHTGASDKKWPGWPGDCVFRLI 95

Query: 62  VPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDA 121
           VPVVKVGSIIGRKGDLI+K CEETRARIRVL+GAVGTPDRVVLISGKEE + PLSPAMDA
Sbjct: 96  VPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEELDAPLSPAMDA 155

Query: 122 VIRIFKRVSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLS 181
           VIR+FKRVSG SENEDEAKASFCSIRLLVASTQAINLIGKQG  IKSIQ+STGASVRVLS
Sbjct: 156 VIRVFKRVSGLSENEDEAKASFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLS 215

Query: 182 GEEMPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDR 241
           G+EMPFYAGADERMVELQGES KVLKALE VVGHLRKFLVDH+VLPLFEKSFNTPASQDR
Sbjct: 216 GDEMPFYAGADERMVELQGESLKVLKALEGVVGHLRKFLVDHSVLPLFEKSFNTPASQDR 275

Query: 242 QSETWADKSSLLTASQSVVSTEYATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPA 301
           Q +TWADKSSLLTASQS++STEY  S+KRESLFLDRETHLDSHIPSSGISLYGQDR LP 
Sbjct: 276 QMDTWADKSSLLTASQSIISTEYPPSTKRESLFLDRETHLDSHIPSSGISLYGQDRVLPT 335

Query: 302 IRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPD 361
           IR SG  RSG PIVTQVTQTMQIPLSYAEDIIGVGG+NIAFIRRNSGA+LTIQESRGLPD
Sbjct: 336 IRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPD 395

Query: 362 EIIVEIKGTSPQVQMAQELIQEALSGPKEPVISSSYGRYDTAGLRSSYSQLTASDSSYAQ 421
           EI VEIKGTS QVQMAQ+LIQEA+S PKEPV SSSYGR D  GLRSSYSQL AS SSY  
Sbjct: 396 EITVEIKGTSSQVQMAQQLIQEAVSAPKEPVTSSSYGRLDATGLRSSYSQLAASGSSYT- 455

Query: 422 LAASDSSYAQLASLDSSYAQLAASDSTYAQLAASGPSYSQLAAPGSSYTSSLSSQSYGAY 481
                                                           +SSLSSQSYG Y
Sbjct: 456 ------------------------------------------------SSSLSSQSYGGY 473

[Close]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 1.3e-119
Identity = 255/474 (53.80%), Postives = 330/474 (69.62%), Query Frame = 0


Query: 15  SLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRAR 74
           SL AAE+     +   ++++WPGWPGDCVFR++VPV KVG+IIGRKGD I+K CEETRAR
Sbjct: 48  SLAAAETTFP-DTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRAR 107

Query: 75  IRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDE----AKASFC 134
           I+VL+G V TPDR+VLISGKEEPE  +SPAMDAV+R+F+RVSG  +N+D+    A + F 
Sbjct: 108 IKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS 167

Query: 135 SIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFK 194
           S+RLLVASTQAINLIGKQG  IKSI +++GASVR+LS EE PFYA  DER+V+LQGE+ K
Sbjct: 168 SVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 227

Query: 195 VLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDRQSETWAD-KSSLLTASQSVVSTE 254
           +LKALEA+VGHLR+FLVDHTV+PLFEK +    SQ RQ E  A+ KSSL T S +++  +
Sbjct: 228 ILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPD 287

Query: 255 YATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQ 314
           ++  ++RE LFL+R++ +DS +  SG+S+Y QD  L A    G AR     VTQV+QTMQ
Sbjct: 288 FSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQ 347

Query: 315 IPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQE 374
           IP SYAEDIIGV G+NIA+IRR SGA +TI+ES   PD+I VEIKGT+ QVQ A++LIQE
Sbjct: 348 IPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQE 407

Query: 375 ALSGPKEPV-ISSSYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQL 434
            +   KEPV +S  Y R D+  + +   QL+                     L S+Y  +
Sbjct: 408 FIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQE----------------PLPSTY--M 467

Query: 435 AASDSTYAQLAASGPSYSQLAAPGSSYTSSLSSQSYGA--YGTSGLGGYSTFRL 481
                 Y   A     YSQL  P S+YT +L+ Q+YG+     S +GGYS++ L
Sbjct: 468 GTEPVQYRPTA-----YSQLGGP-STYTPTLTGQTYGSEYRPASDVGGYSSYNL 495

[Close]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.5e-70
Identity = 161/379 (42.48%), Postives = 226/379 (59.63%), Query Frame = 0


Query: 15  SLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRAR 74
           SL  +E ++D ++    + +WPGWPG+ VFR++VP  KVGSIIGRKGD+I+K  EETRAR
Sbjct: 161 SLQKSEPEED-ATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRAR 220

Query: 75  IRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKR-VSGFSENEDEA-KASFCSI 134
           I++L+G  GT +R V++SGKEEPE  L P+MD ++R+  R V G      +A   S  S 
Sbjct: 221 IKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVST 280

Query: 135 RLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVL 194
           RLLV ++QA +LIGKQG ++K+IQ+++   VRVL  E++P +A  D+R+VE+ GE   V 
Sbjct: 281 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVH 340

Query: 195 KALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQ----DRQSETWADKS----SLLTASQS 254
           +ALE +  HLRKFLVD +++P FE     P  Q        ++W        S+      
Sbjct: 341 RALELIASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYG 400

Query: 255 VVSTEYATSSKRESLFLD----RETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVP- 314
                Y     R   +      R+  ++   P  GIS YG++       P     S  P 
Sbjct: 401 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQ-PHQGISAYGRE------PPMNVHVSSAPP 460

Query: 315 -IVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSP 374
            +  QVTQ MQIPLSYA+ +IG  GSNI++ RR SGA +TIQE+RG+P E+ VE+ GT  
Sbjct: 461 MVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGS 520

Query: 375 QVQMAQELIQEALSGPKEP 378
           QVQ A +LIQ  ++    P
Sbjct: 521 QVQTAVQLIQNFMAEAGAP 531

[Close]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-17
Identity = 108/430 (25.12%), Postives = 183/430 (42.56%), Query Frame = 0


Query: 1   MATNTTTTESDLNSSLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRK 60
           +A   +T ++  +S   +A      +  PP  +   G   D VF+++      G +IG  
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVEVG-NQDVVFKILCSTENAGGVIGTG 471

Query: 61  GDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSE 120
           G ++R    ET A I V        +R++ ++  E PE   SPA  A++ IF R+   + 
Sbjct: 472 GKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFELAT 531

Query: 121 NE--DEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGAD 180
           N+  D    S  + RL+V ++Q   ++GK G+ +  ++ +TGA++++L  E+ P     +
Sbjct: 532 NKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISEN 591

Query: 181 ERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKS---FNTPASQDRQSET---- 240
           +++V++ GE   V +A+  +   LR  +  +++     KS     T    DRQS+     
Sbjct: 592 DQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSI 651

Query: 241 ---------WADKSSLLTASQ------SVVSTEYATSSKRESLFLDRETHLDSHIPSSGI 300
                      + SSL   S+      S  S  Y+ S   +      +   D   PS+G 
Sbjct: 652 GSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPDRFNPSAGY 711

Query: 301 S-LYGQDRAL--------------------PAIRPSG---------AARSG--------V 360
           S  +G+   +                    P   P G         +AR+G         
Sbjct: 712 SHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAAPRGLSDASGGLSSARAGHVLGSGHKS 771

Query: 361 PIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQE-SRGLPDEIIVEIKGTS 368
            IVT  T  +++P +    + G  G N+  +R+ SGA + I E   G  D IIV I GT 
Sbjct: 772 AIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV-ISGTP 831

[Close]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot
Match: P57721 (Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-16
Identity = 91/337 (27.00%), Postives = 152/337 (45.10%), Query Frame = 0


Query: 45  RLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPA 104
           RL++   +VGSIIG+KG+ ++K  EE+ ARI + EG    P+R+V I+G   P + +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 108

Query: 105 MDAVIRIFKR-VSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASV 164
              +   F+  +     N         ++RL+V ++Q  +LIGK G  IK I++STGA V
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 165 RVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPA 224
           +V +G+ +P    + ER V + G    +++ ++ +   + +       +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 225 -SQDRQSETWADKSSLLTASQ-------SVVSTEYATSSKRESLFLDRETHLDSHIPSSG 284
                Q+ T   + ++    Q       ++  T +    +    F   +  L  H     
Sbjct: 229 IFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEK--LPLHSSEEA 288

Query: 285 ISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGA 344
            +L GQ   L A  P+             T  + IP      IIG  G+ I  IR+ SGA
Sbjct: 289 QNLMGQSSGLDASPPAS------------THELTIPNDLIGCIIGRQGTKINEIRQMSGA 348

Query: 345 VLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALS 373
            + I  +     E  + I GT   + +AQ LI   L+
Sbjct: 349 QIKIANATEGSSERQITITGTPANISLAQYLINARLT 362

[Close]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot
Match: P57722 (Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-16
Identity = 91/337 (27.00%), Postives = 152/337 (45.10%), Query Frame = 0


Query: 45  RLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPA 104
           RL++   +VGSIIG+KG+ ++K  EE+ ARI + EG    P+R+V I+G   P + +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 108

Query: 105 MDAVIRIFKR-VSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASV 164
              +   F+  +     N         ++RL+V ++Q  +LIGK G  IK I++STGA V
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 165 RVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPA 224
           +V +G+ +P    + ER V + G    +++ ++ +   + +       +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 225 -SQDRQSETWADKSSLLTASQ-------SVVSTEYATSSKRESLFLDRETHLDSHIPSSG 284
                Q+ T   + ++    Q       ++  T +    +    F   +  L  H     
Sbjct: 229 IFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEK--LPLHSSEEA 288

Query: 285 ISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGA 344
            +L GQ   L A  P+             T  + IP      IIG  G+ I  IR+ SGA
Sbjct: 289 QNLMGQSSGLDASPPAS------------THELTIPNDLIGCIIGRQGTKINEIRQMSGA 348

Query: 345 VLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALS 373
            + I  +     E  + I GT   + +AQ LI   L+
Sbjct: 349 QIKIANATEGSSERQITITGTPANISLAQYLINARLT 362

[Close]

BLAST of Sed0001555 vs. ExPASy TrEMBL
Match: A0A6J1FC72 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=3662 GN=LOC111444285 PE=4 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 4.5e-187
Identity = 375/519 (72.25%), Postives = 399/519 (76.88%), Query Frame = 0


Query: 1   MATNTTT----TESD-LNSSLPAA--------------------ESDQDYSSAPPSDD-- 60
           MATNTTT    T++D LNSS   A                     S+QDY SAP SD   
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGR+GDLI+K CEETRARIRVL+GA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEEPE P SPAMDAV+R+FKRVSGFSENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAG DERMVELQGE+ KVLKALEAVVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLKVLKALEAVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+++WADKSSLL+ASQSV+STEY  SSKRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTDSWADKSSLLSASQSVISTEYPPSSKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYG DR LPAIR SG  RSGVPIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA+SGPKEPV SS
Sbjct: 361 GGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLGASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. ExPASy TrEMBL
Match: A0A0A0LMH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 6.5e-186
Identity = 373/519 (71.87%), Postives = 397/519 (76.49%), Query Frame = 0


Query: 1   MATNTTTTE-------SDLNSSLP---AAE---------------SDQDYSSAPPSDD-- 60
           MATNTTT         + L+S+LP   AAE               S+QDYSS PPSD   
Sbjct: 1   MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSDSAA 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGRKGDLI+K CEETRARIRVL+GA
Sbjct: 61  HEPSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEE E PLSPAMDAVIR+FKRVSG SENEDEAKASFCSIRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAGADERMVELQGES KVLKALE VVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+ETWADKSSLLTASQS++S EYA S+KRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRE H DSHI SSGISLYGQDR LP IR SG  RSG PIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA++ PKEPV SS
Sbjct: 361 GGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SS+                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLAASGSSFT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. ExPASy TrEMBL
Match: A0A5D3BVI2 (RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001920 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 3.2e-185
Identity = 372/519 (71.68%), Postives = 394/519 (75.92%), Query Frame = 0


Query: 1   MATNTTT----------TESDLNSSLPAAESD---------------QDYSSAPPSDD-- 60
           MATNTTT           +S    SL AAE+D               QDYSS PPSD   
Sbjct: 1   MATNTTTDNGSTDAIANPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSDSAA 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGRKGDLI+K CEETRARIRVL+GA
Sbjct: 61  HEPSSHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEE + PLSPAMDAVIR+FKRVSG SENEDEAKASF SIRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAGADERMVELQGES KVLKALE VVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQDRQ+ETWADKSSLLTASQS++S EY  S+KRESLFL
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYPPSTKRESLFL 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYGQDR LP IR SG  RSG PIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA++ PKEPV SS
Sbjct: 361 GGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEPVTSS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DT GLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTTGLRSSYSQLAASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. ExPASy TrEMBL
Match: A0A6J1HR76 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661 GN=LOC111465395 PE=4 SV=1)

HSP 1 Score: 652.1 bits (1681), Expect = 1.8e-183
Identity = 369/519 (71.10%), Postives = 397/519 (76.49%), Query Frame = 0


Query: 1   MATNTTT----TESDLNSSLP----------------AAESDQD-----YSSAPPSDD-- 60
           MATNTTT    T++D  +S P                 AESD D     Y SAP SD   
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASDSVP 60

Query: 61  ------------KWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGA 120
                       KWPGWPGDCVFRL+VPVVKVGSIIGR+GDLI+K CEETRARIRVL+GA
Sbjct: 61  HESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQA 180
           VGTPDRVVLISGKEEPE PLSPAMDAV+R+FKRVSGFSENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGH 240
           INLIGKQG  IKSIQ+STGASVRVLSG+EMPFYAG DERM+ELQGE+ KVLKALEAVVGH
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLKVLKALEAVVGH 240

Query: 241 LRKFLVDHTVLPLFEKSFNTPASQDRQSETWADKSSLLTASQSVVSTEYATSSKRESLFL 300
           LRKFLVDH+VLPLFEKSFNTPASQD Q++ WADKSSLL+AS+SV+S EY  SSKRESLF+
Sbjct: 241 LRKFLVDHSVLPLFEKSFNTPASQDCQTDAWADKSSLLSASRSVISNEYPPSSKRESLFI 300

Query: 301 DRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQIPLSYAEDIIGV 360
           DRETHLDSHI SSGISLYG DR LPAIR SG  RSGVPIVTQVTQTMQIPLSYAEDIIGV
Sbjct: 301 DRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAEDIIGV 360

Query: 361 GGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQEALSGPKEPVISS 420
           GG+NIAFIRRNSGA+LTIQESRGLPDEI VEIKGTS QVQMAQ+LIQEA+SGPKEPV +S
Sbjct: 361 GGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEPVTTS 420

Query: 421 SYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQLAASDSTYAQLAAS 480
           SYGR DTAGLRSSYSQL AS SSY                                    
Sbjct: 421 SYGRLDTAGLRSSYSQLGASGSSYT----------------------------------- 470

[Close]

BLAST of Sed0001555 vs. ExPASy TrEMBL
Match: A0A6J1D9V1 (RNA-binding KH domain-containing protein PEPPER OS=Momordica charantia OX=3673 GN=LOC111018213 PE=4 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 8.8e-183
Identity = 364/488 (74.59%), Postives = 392/488 (80.33%), Query Frame = 0


Query: 2   ATNTTTTESDLNS------SLPAAESDQDYSS--APPSDDKWPGWPGDCVFRLVVPVVKV 61
           +T     ESDL+       S+PA++S    +S     SD KWPGWPGDCVFRL+VPVVKV
Sbjct: 36  STEAGGAESDLDPSNSDYLSVPASDSGAQEASNHTGSSDKKWPGWPGDCVFRLIVPVVKV 95

Query: 62  GSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFK 121
           GSIIGRKGDLI+K CEET+ARIRVL+GAVGTPDRVVLISGKEEPE PLSPAMDAVIR+FK
Sbjct: 96  GSIIGRKGDLIKKMCEETKARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVIRVFK 155

Query: 122 RVSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPF 181
           RVSGFSENED+ KASFCSIRLLVASTQAINLIGKQG  IKSIQ+STGASVRVLSG+EMPF
Sbjct: 156 RVSGFSENEDDTKASFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPF 215

Query: 182 YAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDRQSETWA 241
           YAGADERMVELQGES KVLKALEAVVGHLRKFLVDH+VLPLFEKSFNT ASQDRQ++TWA
Sbjct: 216 YAGADERMVELQGESLKVLKALEAVVGHLRKFLVDHSVLPLFEKSFNTTASQDRQTDTWA 275

Query: 242 DKSSLLTASQSVVSTEYATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPAIRPSGA 301
           DKSSL TASQSV+STEY  ++KRESLF DRE+HLDSH+ SSGISLYGQDR LP IR SG 
Sbjct: 276 DKSSLHTASQSVISTEYPPATKRESLFHDRESHLDSHMASSGISLYGQDRILPGIRSSGV 335

Query: 302 ARSGVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEI 361
           ARSG PIVTQVTQTMQIPLSYAEDIIGVGG+NIAFIRRNSGA+LTIQESRGLPDEI VEI
Sbjct: 336 ARSGAPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEI 395

Query: 362 KGTSPQVQMAQELIQEALSGPKEPVISSSYGRYDTAGLRSSYSQLTASDSSYAQLAASDS 421
           KGTS QVQMAQ+LIQEA+SGPKEPV SSSYGR D AGLRSSYSQL  S SSY        
Sbjct: 396 KGTSSQVQMAQQLIQEAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYT------- 455

Query: 422 SYAQLASLDSSYAQLAASDSTYAQLAASGPSYSQLAAPGSSYT-SSLSSQSYGAYGTSGL 481
                                                  SS+T SSLSSQSYG YG+SGL
Sbjct: 456 ---------------------------------------SSFTSSSLSSQSYGGYGSSGL 476

[Close]

BLAST of Sed0001555 vs. TAIR 10
Match: AT4G26000.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 431.4 bits (1108), Expect = 9.4e-121
Identity = 255/474 (53.80%), Postives = 330/474 (69.62%), Query Frame = 0


Query: 15  SLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRAR 74
           SL AAE+     +   ++++WPGWPGDCVFR++VPV KVG+IIGRKGD I+K CEETRAR
Sbjct: 48  SLAAAETTFP-DTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRAR 107

Query: 75  IRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSENEDE----AKASFC 134
           I+VL+G V TPDR+VLISGKEEPE  +SPAMDAV+R+F+RVSG  +N+D+    A + F 
Sbjct: 108 IKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS 167

Query: 135 SIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFK 194
           S+RLLVASTQAINLIGKQG  IKSI +++GASVR+LS EE PFYA  DER+V+LQGE+ K
Sbjct: 168 SVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 227

Query: 195 VLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDRQSETWAD-KSSLLTASQSVVSTE 254
           +LKALEA+VGHLR+FLVDHTV+PLFEK +    SQ RQ E  A+ KSSL T S +++  +
Sbjct: 228 ILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPD 287

Query: 255 YATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVPIVTQVTQTMQ 314
           ++  ++RE LFL+R++ +DS +  SG+S+Y QD  L A    G AR     VTQV+QTMQ
Sbjct: 288 FSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQ 347

Query: 315 IPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELIQE 374
           IP SYAEDIIGV G+NIA+IRR SGA +TI+ES   PD+I VEIKGT+ QVQ A++LIQE
Sbjct: 348 IPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQE 407

Query: 375 ALSGPKEPV-ISSSYGRYDTAGLRSSYSQLTASDSSYAQLAASDSSYAQLASLDSSYAQL 434
            +   KEPV +S  Y R D+  + +   QL+                     L S+Y  +
Sbjct: 408 FIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQE----------------PLPSTY--M 467

Query: 435 AASDSTYAQLAASGPSYSQLAAPGSSYTSSLSSQSYGA--YGTSGLGGYSTFRL 481
                 Y   A     YSQL  P S+YT +L+ Q+YG+     S +GGYS++ L
Sbjct: 468 GTEPVQYRPTA-----YSQLGGP-STYTPTLTGQTYGSEYRPASDVGGYSSYNL 495

[Close]

BLAST of Sed0001555 vs. TAIR 10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 267.7 bits (683), Expect = 1.8e-71
Identity = 161/379 (42.48%), Postives = 226/379 (59.63%), Query Frame = 0


Query: 15  SLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRAR 74
           SL  +E ++D ++    + +WPGWPG+ VFR++VP  KVGSIIGRKGD+I+K  EETRAR
Sbjct: 161 SLQKSEPEED-ATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRAR 220

Query: 75  IRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKR-VSGFSENEDEA-KASFCSI 134
           I++L+G  GT +R V++SGKEEPE  L P+MD ++R+  R V G      +A   S  S 
Sbjct: 221 IKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVST 280

Query: 135 RLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGADERMVELQGESFKVL 194
           RLLV ++QA +LIGKQG ++K+IQ+++   VRVL  E++P +A  D+R+VE+ GE   V 
Sbjct: 281 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVH 340

Query: 195 KALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQ----DRQSETWADKS----SLLTASQS 254
           +ALE +  HLRKFLVD +++P FE     P  Q        ++W        S+      
Sbjct: 341 RALELIASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYG 400

Query: 255 VVSTEYATSSKRESLFLD----RETHLDSHIPSSGISLYGQDRALPAIRPSGAARSGVP- 314
                Y     R   +      R+  ++   P  GIS YG++       P     S  P 
Sbjct: 401 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQ-PHQGISAYGRE------PPMNVHVSSAPP 460

Query: 315 -IVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSP 374
            +  QVTQ MQIPLSYA+ +IG  GSNI++ RR SGA +TIQE+RG+P E+ VE+ GT  
Sbjct: 461 MVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGS 520

Query: 375 QVQMAQELIQEALSGPKEP 378
           QVQ A +LIQ  ++    P
Sbjct: 521 QVQTAVQLIQNFMAEAGAP 531

[Close]

BLAST of Sed0001555 vs. TAIR 10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-19
Identity = 89/342 (26.02%), Postives = 146/342 (42.69%), Query Frame = 0


Query: 41  DCVFRLVVPVVKVGSIIGRKGDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEP 100
           +  FRL+ P  KVGS+IG+ G ++R    E+ A I+V +    + +R+++IS +E  E  
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334

Query: 101 LSPAMDAVIRIFKRVSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTG 160
            S A D V+R+  R+         A  +    RLLV S     L+GK G  I  ++ +TG
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFEPSAAVVA----RLLVHSPYIGRLLGKGGHLISEMRRATG 394

Query: 161 ASVRVLSGEEMPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTV--------L 220
           AS+RV + ++   Y    + +V++ G    V  AL  ++  LR+ +    +         
Sbjct: 395 ASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPP 454

Query: 221 PLFEKSFNTPASQ--DRQSETWADKSSLLTASQSVVSTEYATSSKRESLFLDRETHLDSH 280
           P F   +  P      RQ     D+                   +      DR     S 
Sbjct: 455 PPFMGPYPEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPGFDRPPSPMSW 514

Query: 281 IPSSGISLYGQDRALPAIRPSGAAR-----SGVPIVTQVTQTMQIPLSYAEDIIGVGGSN 340
            P  GI  +      P +    A R     S  P++T     + IP +Y   + G   SN
Sbjct: 515 TPQPGIDGHPGGMVPPDVNHGFALRNEPIGSENPVMTSANVEIVIPQAYLGHVYGENCSN 574

Query: 341 IAFIRRNSGAVLTIQESRGLPDEIIVEIKGTSPQVQMAQELI 368
           + +I++ SGA + + + +    E +V + GTS Q   AQ L+
Sbjct: 575 LNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLL 612

[Close]

BLAST of Sed0001555 vs. TAIR 10
Match: AT5G46190.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-18
Identity = 92/328 (28.05%), Postives = 158/328 (48.17%), Query Frame = 0


Query: 52  KVGSIIGRKGDLIRKTCEETRARIRVLEGAVG-TPDRVVLISGKEEPEEPLSPAMDAVIR 111
           K+G +IG+ G  I+   + + + I V +       D V+ ++  E P++  S A++AV+ 
Sbjct: 327 KIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLL 386

Query: 112 IFKRVSGFSENEDEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEE 171
           + ++++   E+ED+ K     ++LLV+S     +IGK G  I  I+  T A + +  G  
Sbjct: 387 LQEKIN--DEDEDKVK-----MQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNN 446

Query: 172 MPFYAGADERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKSFNTPASQDRQSE 231
            P  A  ++ +VE+ GE   V  AL  +V  LR    D  +      S N P ++   + 
Sbjct: 447 TPKCADPNDELVEISGEVSNVRDALIQIVLRLR----DDVLRDRETGSRNQPPARSENNN 506

Query: 232 TWADKSSL--LTASQSVVSTEYATSSKRESLFLDRETHLDSHIPSSGISLYGQDRALPAI 291
            ++  SS   L   QS +S+    +S   +   +  + + S +PSSG  +YG   + P  
Sbjct: 507 FFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPETGSSM-SMLPSSG-GIYGYG-SFPVG 566

Query: 292 RPSGAARS--------GVPIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQ 351
             S  + S        G+P  T  T  ++IP +    ++G GG N+  IRR SGA++ I 
Sbjct: 567 NTSYGSNSSYSSNLYGGLPQST--TMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEIS 626

Query: 352 ESRGLPDEIIVEIKGTSPQVQMAQELIQ 369
           +S+      +  I GTS Q + A+ L Q
Sbjct: 627 DSKNSHGGRVALISGTSEQKRTAENLFQ 638

[Close]

BLAST of Sed0001555 vs. TAIR 10
Match: AT5G64390.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-18
Identity = 108/430 (25.12%), Postives = 183/430 (42.56%), Query Frame = 0


Query: 1   MATNTTTTESDLNSSLPAAESDQDYSSAPPSDDKWPGWPGDCVFRLVVPVVKVGSIIGRK 60
           +A   +T ++  +S   +A      +  PP  +   G   D VF+++      G +IG  
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVEVG-NQDVVFKILCSTENAGGVIGTG 471

Query: 61  GDLIRKTCEETRARIRVLEGAVGTPDRVVLISGKEEPEEPLSPAMDAVIRIFKRVSGFSE 120
           G ++R    ET A I V        +R++ ++  E PE   SPA  A++ IF R+   + 
Sbjct: 472 GKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFELAT 531

Query: 121 NE--DEAKASFCSIRLLVASTQAINLIGKQGLSIKSIQDSTGASVRVLSGEEMPFYAGAD 180
           N+  D    S  + RL+V ++Q   ++GK G+ +  ++ +TGA++++L  E+ P     +
Sbjct: 532 NKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISEN 591

Query: 181 ERMVELQGESFKVLKALEAVVGHLRKFLVDHTVLPLFEKS---FNTPASQDRQSET---- 240
           +++V++ GE   V +A+  +   LR  +  +++     KS     T    DRQS+     
Sbjct: 592 DQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSI 651

Query: 241 ---------WADKSSLLTASQ------SVVSTEYATSSKRESLFLDRETHLDSHIPSSGI 300
                      + SSL   S+      S  S  Y+ S   +      +   D   PS+G 
Sbjct: 652 GSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPDRFNPSAGY 711

Query: 301 S-LYGQDRAL--------------------PAIRPSG---------AARSG--------V 360
           S  +G+   +                    P   P G         +AR+G         
Sbjct: 712 SHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAAPRGLSDASGGLSSARAGHVLGSGHKS 771

Query: 361 PIVTQVTQTMQIPLSYAEDIIGVGGSNIAFIRRNSGAVLTIQE-SRGLPDEIIVEIKGTS 368
            IVT  T  +++P +    + G  G N+  +R+ SGA + I E   G  D IIV I GT 
Sbjct: 772 AIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV-ISGTP 831

The following BLAST results are available for this feature:

BLAST of Sed0001555 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938096.1	9.3e-187	72.25	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_004149510.2	1.3e-185	71.87	RNA-binding KH domain-containing protein PEPPER isoform X1 [Cucumis sativus] >KG...	[more]
XP_023538336.1	1.8e-185	71.87	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]
TYK03085.1	6.7e-185	71.68	RNA-binding KH domain-containing protein PEPPER [Cucumis melo var. makuwa]	[more]
XP_038890982.1	6.7e-185	73.83	RNA-binding KH domain-containing protein PEPPER-like [Benincasa hispida]	[more]

BLAST of Sed0001555 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH4	1.3e-119	53.80	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SR13	2.5e-70	42.48	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
F4KDN0	4.3e-17	25.12	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
P57721	2.8e-16	27.00	Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2	[more]
P57722	2.8e-16	27.00	Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3	[more]

BLAST of Sed0001555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC72	4.5e-187	72.25	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita moschata OX=36...	[more]
A0A0A0LMH4	6.5e-186	71.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1	[more]
A0A5D3BVI2	3.2e-185	71.68	RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1HR76	1.8e-183	71.10	RNA-binding KH domain-containing protein PEPPER-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1D9V1	8.8e-183	74.59	RNA-binding KH domain-containing protein PEPPER OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0001555 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26000.1	9.4e-121	53.80	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	1.8e-71	42.48	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	2.1e-19	26.02	RNA-binding KH domain-containing protein	[more]
AT5G46190.1	1.8e-18	28.05	RNA-binding KH domain-containing protein	[more]
AT5G64390.1	3.0e-18	25.12	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 40..113 e-value: 2.7E-9 score: 46.9 coord: 128..203 e-value: 1.2E-7 score: 41.4 coord: 302..372 e-value: 1.3E-9 score: 47.9
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 297..373 e-value: 7.7E-14 score: 53.1
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 295..374
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 35..99
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 126..211
None	No IPR available	GENE3D	3.30.310.210		coord: 41..206 e-value: 1.3E-28 score: 101.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR10288:SF277	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER	coord: 31..405
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 31..405
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 303..367 score: 14.592057
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 41..108 score: 13.900271
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 129..198 score: 13.229449
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 131..199 e-value: 4.68531E-15 score: 67.5015
None	No IPR available	CDD	cd00105	KH-I	coord: 305..368 e-value: 1.01371E-12 score: 61.0367
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 43..112 e-value: 4.05794E-18 score: 76.3611
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 132..198 e-value: 9.0E-10 score: 38.2 coord: 44..96 e-value: 2.9E-9 score: 36.6 coord: 305..369 e-value: 5.0E-12 score: 45.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001555.1	Sed0001555.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048581	negative regulation of post-embryonic development
biological_process	GO:2000242	negative regulation of reproductive process
biological_process	GO:0048585	negative regulation of response to stimulus
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:2000028	regulation of photoperiodism, flowering
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding