Sed0001343 (gene) Chayote v1

Overview


Name	Sed0001343
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L21
Location	LG02: 40927332 .. 40929181 (-)
RNA-Seq Expression	Sed0001343
Synteny	Sed0001343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATTACTTTCAGTCGTCGGAGAAGAGATTATCCTGCCAAGAGAAGATGCCAGCCGGCCATGGACTTCGGTCGCGTACCAGAGATCTCTTCGCCAGACCTTTCAGGAAGAAGGGTTACATTGCCCTCACCACATACCTGAGGACCTTCAAAATCGGCGACTATGTCGACGTCAAGGTCAACGGAGCCATCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATTGGTGTTGAGATCAACAAGCAGGTTCGTTTTGGGTTTTGATTTTCGTTGCGTTTTGATCGATTTTGTTGTCCGTTCTTTTGTTAGGTTTCTGTTTTCGTGTTGAACGTATTGGATTTCGTTTGATTATTGTACTGACTTCCTTATGGTCAGGCTGGAAGAAGTTGCGGAATCAGTTCTGTTTGTATTTTTATGGTTAATCTTAGGTTTTTTTGAGGATTGGATGTATGTATTAGTTAATTAATTTAACTGGTTTGATGTATGCTCTGCATAATGTTGTATTAGTTAATTAGTGTAATAACTGTTTTTTTGATGTATGTTTTGCTTAATGATTATGTATTTGTTTATTAGTATATCTGCTTTGATGTATGATTTTCATAATGATGTATTAGTTAATTAAACAACTTGTTTGATGTATAACTTGCATAATGATGTATTAGTTCATTAGTATATAGCAATTGGTTTGAATGTCGAGGTTTTGCATTATTATATTTACTATTTTTGTTTGATGTAGCTGGAGCTTCACATCTTTTTGTAATTGTTTGCAAATTATTACTTGTTTCATGCTGCTTCAAAGACGATTGTTAATGAATCTTTGCCTAGTGTTTTGTTCATTTAGGGTATGTTTGGGGCTGTTTATGTAAACAGCTGGATTAGTTATAATAATCCAACCGATTTGTCTCACCGTTTATTATAAATAGTGGTTACCTAAACCTGCATGCTTGTTTATTTAACCCTATGTGCTCGTTTATTTAAACCTTAAATATTTTACTTTTTGTTACATAAACAGTCCCTCAACCACTGTTTATCATAATCCATGTTATAATAACATGTCCCTCAACTACCGTTTATCATATCCCACCATTTATCATAACTTTCTGTCTATCATAACCAAATTGGTGCTCCGAACACAACCGAATGGATTTTGTTTATGACTGTAGAACAAACCGTGATATTGCTCATTATGAATTTGAAGGCAAATAAAACCAAGTTGCAACTGGTATTTTTTATGTGAATTTGAATAGGATTCCTTGTGTTCTGATGCTTATCAATAAAATTTGCAGGTGGGTAACAGGATCATAAAGAAGAGGATCCATGTCCGCATTGAGCACGTGCAGCCATCGCGATGCACGGAAGACTTCCGGTTGAGGAAGGTGAAGAATGACCAATTGAAGGCTGAAGCCAAGGCTAAAGGTGAGGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCCGGGTTCATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCCATTCCATATGATGTCGTTAATGACCTCAAGGGTGGCTATTAGAAATTTCTTTTCATTGAACTTCTCATGTTTGGGCTGTTTATTTTTGTTTTGGTTATTGAACTTCTTGAATAGTGTTACAATTTTCTCTTTATGCTAAATTTTGGATGCACAACTTATCTATTGAATTATTCCTCAAGTTCTTTTTTCAGTCTCATGAGTTAACTATGTAGTTAAGAGGTATATTCAGATTGTTTTGCTGCAATATGTTCTTATTAATGTTTTGCCTGCACAAGTATCATCTAACTTTGAATTTTCAGAAAGGAGGA

mRNA sequence

GTTTCATTACTTTCAGTCGTCGGAGAAGAGATTATCCTGCCAAGAGAAGATGCCAGCCGGCCATGGACTTCGGTCGCGTACCAGAGATCTCTTCGCCAGACCTTTCAGGAAGAAGGGTTACATTGCCCTCACCACATACCTGAGGACCTTCAAAATCGGCGACTATGTCGACGTCAAGGTCAACGGAGCCATCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATTGGTGTTGAGATCAACAAGCAGGTGGGTAACAGGATCATAAAGAAGAGGATCCATGTCCGCATTGAGCACGTGCAGCCATCGCGATGCACGGAAGACTTCCGGTTGAGGAAGGTGAAGAATGACCAATTGAAGGCTGAAGCCAAGGCTAAAGGTGAGGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCCGGGTTCATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCCATTCCATATGATGTCGTTAATGACCTCAAGGGTGGCTATTAGAAATTTCTTTTCATTGAACTTCTCATGTTTGGGCTGTTTATTTTTGTTTTGGTTATTGAACTTCTTGAATAGTGTTACAATTTTCTCTTTATGCTAAATTTTGGATGCACAACTTATCTATTGAATTATTCCTCAAGTTCTTTTTTCAGTCTCATGAGTTAACTATGTAGTTAAGAGGTATATTCAGATTGTTTTGCTGCAATATGTTCTTATTAATGTTTTGCCTGCACAAGTATCATCTAACTTTGAATTTTCAGAAAGGAGGA

Coding sequence (CDS)

ATGCCAGCCGGCCATGGACTTCGGTCGCGTACCAGAGATCTCTTCGCCAGACCTTTCAGGAAGAAGGGTTACATTGCCCTCACCACATACCTGAGGACCTTCAAAATCGGCGACTATGTCGACGTCAAGGTCAACGGAGCCATCCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATTGGTGTTGAGATCAACAAGCAGGTGGGTAACAGGATCATAAAGAAGAGGATCCATGTCCGCATTGAGCACGTGCAGCCATCGCGATGCACGGAAGACTTCCGGTTGAGGAAGGTGAAGAATGACCAATTGAAGGCTGAAGCCAAGGCTAAAGGTGAGGTCATTTGCACCAAGAGGCAACCGGAAGGCCCCAAACCCGGGTTCATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCCATTCCATATGATGTCGTTAATGACCTCAAGGGTGGCTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of Sed0001343 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRCTE+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 3.4e-88
Identity = 158/164 (96.34%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVR+EHVQPSRCTE+FRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. NCBI nr
Match: KAG6580788.1 (60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.1 bits (858), Expect = 3.4e-88
Identity = 160/164 (97.56%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRC E+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo] >KAG6580787.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.7 bits (857), Expect = 4.4e-88
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRC E+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 332.4 bits (851), Expect = 2.2e-87
Identity = 157/164 (95.73%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVR+EHVQPSRCTE+FRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 139/164 (84.76%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.2e-81
Identity = 138/164 (84.15%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-42
Identity = 92/158 (58.23%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  FKIG+YVDV  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVRI+HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.5e-42
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRTF++GDYVD+K  G +HKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   EAK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-41
Identity = 80/157 (50.96%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ +K+GD VD+K NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++R+EH++ S+C ++F  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of Sed0001343 vs. ExPASy TrEMBL
Match: A0A6J1F7A4 (60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.6e-89
Identity = 160/164 (97.56%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRCTE+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.1e-88
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRC E+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy TrEMBL
Match: A0A6J1F2B9 (60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.1e-88
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVR+EHVQPSRC E+FRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy TrEMBL
Match: A0A5D3DP20 (60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005180 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 157/164 (95.73%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVR+EHVQPSRCTE+FRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. ExPASy TrEMBL
Match: A0A1S3B7V0 (60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 157/164 (95.73%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVR+EHVQPSRCTE+FRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-82
Identity = 139/164 (84.76%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-82
Identity = 139/164 (84.76%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-82
Identity = 138/164 (84.15%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Sed0001343 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-82
Identity = 138/164 (84.15%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRTFK+GDYVDVKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRIEHVQPSRCTEDFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVR+EHVQ SRC E+F+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of Sed0001343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934303.1	1.2e-88	97.56	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]
XP_038906379.1	3.4e-88	96.34	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
KAG6580788.1	3.4e-88	97.56	60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934302.1	4.4e-88	96.95	60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p...	[more]
XP_008443016.1	2.2e-87	95.73	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]

BLAST of Sed0001343 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	1.4e-81	84.76	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	3.2e-81	84.15	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
O82574	1.7e-42	58.23	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q54X53	8.5e-42	54.09	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]
Q02753	4.2e-41	50.96	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of Sed0001343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7A4	5.6e-89	97.56	60S ribosomal protein L21-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441507 P...	[more]
A0A6J1IYF0	2.1e-88	96.95	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1F2B9	2.1e-88	96.95	60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 S...	[more]
A0A5D3DP20	1.1e-87	95.73	60S ribosomal protein L21-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B7V0	1.1e-87	95.73	60S ribosomal protein L21-1 OS=Cucumis melo OX=3656 GN=LOC103486741 PE=3 SV=1	[more]

BLAST of Sed0001343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09590.1	1.0e-82	84.76	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.0e-82	84.76	Translation protein SH3-like family protein	[more]
AT1G57660.1	2.3e-82	84.15	Translation protein SH3-like family protein	[more]
AT1G57860.1	2.3e-82	84.15	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 1.7E-45 score: 153.0
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 1.9E-24 score: 87.5
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 1.4E-45 score: 155.3
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001343.1	Sed0001343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome