Sed0001234 (gene) Chayote v1

Overview


Name	Sed0001234
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal export protein NMD3
Location	LG14: 20522632 .. 20524495 (+)
RNA-Seq Expression	Sed0001234
Synteny	Sed0001234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCCCAAGATTTGACCTAAACCCTAAACGAAAAATATTCGCCATAGCCATCTCAGCCAACAGTCTCCTCTCTCGATCTTCATCTCCAAACCAAACTCTTTTGATTTTCGCTTTAGGATTCAATTTATTTCTGCAAACGGCTATTCCAATTCTATCATCGACTTGATCCGCGTCTGATTCAAGGTAAATCGATTTTGGGATTTTTGTATTAACGATTTGTAATGTTTCTGAGTTTCTTGATCGATAGCTCATAGATTTCTTGTAAACTGCTCTTCGTATTGATTGTATGGAGTTTGGCGAGCCCGTGAATTCGTGGTTGAAGAAGAAATCGAATTACTCAGAGATGGAGGCTGATGAGAATGTTAATTCTGTTTGGAGATTTCGAATTTCGGAACTATTGATGTTTTTGTTAAATATTTGTAGTTCCTTTTCAAAATTTCTGTAGATATGTTTTTTTTTCATATTTGCAGGGGCAACAAAACAGTAAACACTCTATTTAAGCGACTAAATTTGTAACCTCAAACTCTTTTGTTTGAAATTAAATGCTTAATATGTGTTCTTTGGTTTCTGTGGTAGGAATATAAACTATGTCGAGGGACGCGGAGTGGGTGGCTGCTGTTCAACTCAAGCAGCACGTCCCACATCGGCGCACCTTTTTGTTCTTGGAGCAACTGATACTAAAGCACGGTGCTGCTGACAATGCTGTAAGGATTAAACAGATGGATCAAGGTATTGACTTTTTCTTTTCCAATAGAAGTCATGGTGTCAAGTTTGTGGAATTTGTTGGGAAGGTTGCTCCCATCCGGGGTCACCACGATAAACGACTTGTTTCACATGATGCTAAGAGTAACACTCACAATTATGAGCACACATTCTCTGTCGAAATCTCCCCAATATGCCGTGAGGATTTGATATGCTTGCCTCCGATAGATGCTGTTCGTTTGGGCAATCTTGGTCCTATCGTAATTTGCACGGAAGTTACCAATGTCATTACTTTGCTTGACCCATTAACGTTAAGGCACTCCTTCTTGGATGCTGATCAGTATTGGAGGACATCCTTTAAGTCTCTACTTACTAGCAGGCAACTTGTGGAATATTTTGTTATCGATATAAAGAATACCTCTACTGAAGTGAATGTCGGTGGTTCGAAGTATATTTTGGCTGATGCTCAGGTAGCTCGTATATCTGATTTTGGAAGGAGTGACACGATATTTTCCATAAGAACCCATCTAGGTCATATTCTGGAGCCTGGGGATAATGCCTTTGGTTATGATCTGTATGGAGCCAATAGTAATGCCTTTGGTTATGATCTGTATAAGGGGCTTCAGATTCCAGAAGCAATTCTAATCAAGAAGAGTTACGAAGAAAAGCGTCGGAGAAAGCATGGAAAGCCTAGATCATGGAAGCTTAAATCTCTTGAAACGGATGTGGATGATAAAGATAATAGTAGAGCTGAGCGGGATAAGAGGAACTCGGAATATGAACAGTTTTTAAGAGATTTGGAGGAGAATCCAGAGATGAGGTTCAACATATCATTGTACCGAAATGGAGAATACCAAACTTCTGAAAGGACTGATGGAGAAGGCGTACCTTTGGTACCAGTTGAGGAGTTGCTTGCTGTTCTTGATATTAATGAAGAGAATGGAGACGATGACATGCACGAGTAAGTATTTAGGGATTTGTTTTTAACTGGATGGAGAGATTTGTTCATTTTTTAAAAAGTTGAAGTATAAATATTTATCATAATTTGTTGTGATATTGATTTGTAATTTAAGTTTGTTTAATTAATTTAGGTCTCTGTTTGATATCTCCTTTTCTTTTTTGTAAGTAGAGACATTTTTAATTTTTTAAAAACGTTTTGGG

mRNA sequence

CTCGCCCAAGATTTGACCTAAACCCTAAACGAAAAATATTCGCCATAGCCATCTCAGCCAACAGTCTCCTCTCTCGATCTTCATCTCCAAACCAAACTCTTTTGATTTTCGCTTTAGGATTCAATTTATTTCTGCAAACGGCTATTCCAATTCTATCATCGACTTGATCCGCGTCTGATTCAAGGAATATAAACTATGTCGAGGGACGCGGAGTGGGTGGCTGCTGTTCAACTCAAGCAGCACGTCCCACATCGGCGCACCTTTTTGTTCTTGGAGCAACTGATACTAAAGCACGGTGCTGCTGACAATGCTGTAAGGATTAAACAGATGGATCAAGGTATTGACTTTTTCTTTTCCAATAGAAGTCATGGTGTCAAGTTTGTGGAATTTGTTGGGAAGGTTGCTCCCATCCGGGGTCACCACGATAAACGACTTGTTTCACATGATGCTAAGAGTAACACTCACAATTATGAGCACACATTCTCTGTCGAAATCTCCCCAATATGCCGTGAGGATTTGATATGCTTGCCTCCGATAGATGCTGTTCGTTTGGGCAATCTTGGTCCTATCGTAATTTGCACGGAAGTTACCAATGTCATTACTTTGCTTGACCCATTAACGTTAAGGCACTCCTTCTTGGATGCTGATCAGTATTGGAGGACATCCTTTAAGTCTCTACTTACTAGCAGGCAACTTGTGGAATATTTTGTTATCGATATAAAGAATACCTCTACTGAAGTGAATGTCGGTGGTTCGAAGTATATTTTGGCTGATGCTCAGGTAGCTCGTATATCTGATTTTGGAAGGAGTGACACGATATTTTCCATAAGAACCCATCTAGGTCATATTCTGGAGCCTGGGGATAATGCCTTTGGTTATGATCTGTATGGAGCCAATAGTAATGCCTTTGGTTATGATCTGTATAAGGGGCTTCAGATTCCAGAAGCAATTCTAATCAAGAAGAGTTACGAAGAAAAGCGTCGGAGAAAGCATGGAAAGCCTAGATCATGGAAGCTTAAATCTCTTGAAACGGATGTGGATGATAAAGATAATAGTAGAGCTGAGCGGGATAAGAGGAACTCGGAATATGAACAGTTTTTAAGAGATTTGGAGGAGAATCCAGAGATGAGGTTCAACATATCATTGTACCGAAATGGAGAATACCAAACTTCTGAAAGGACTGATGGAGAAGGCGTACCTTTGGTACCAGTTGAGGAGTTGCTTGCTGTTCTTGATATTAATGAAGAGAATGGAGACGATGACATGCACGAGTAAGTATTTAGGGATTTGTTTTTAACTGGATGGAGAGATTTGTTCATTTTTTAAAAAGTTGAAGTATAAATATTTATCATAATTTGTTGTGATATTGATTTGTAATTTAAGTTTGTTTAATTAATTTAGGTCTCTGTTTGATATCTCCTTTTCTTTTTTGTAAGTAGAGACATTTTTAATTTTTTAAAAACGTTTTGGG

Coding sequence (CDS)

ATGTCGAGGGACGCGGAGTGGGTGGCTGCTGTTCAACTCAAGCAGCACGTCCCACATCGGCGCACCTTTTTGTTCTTGGAGCAACTGATACTAAAGCACGGTGCTGCTGACAATGCTGTAAGGATTAAACAGATGGATCAAGGTATTGACTTTTTCTTTTCCAATAGAAGTCATGGTGTCAAGTTTGTGGAATTTGTTGGGAAGGTTGCTCCCATCCGGGGTCACCACGATAAACGACTTGTTTCACATGATGCTAAGAGTAACACTCACAATTATGAGCACACATTCTCTGTCGAAATCTCCCCAATATGCCGTGAGGATTTGATATGCTTGCCTCCGATAGATGCTGTTCGTTTGGGCAATCTTGGTCCTATCGTAATTTGCACGGAAGTTACCAATGTCATTACTTTGCTTGACCCATTAACGTTAAGGCACTCCTTCTTGGATGCTGATCAGTATTGGAGGACATCCTTTAAGTCTCTACTTACTAGCAGGCAACTTGTGGAATATTTTGTTATCGATATAAAGAATACCTCTACTGAAGTGAATGTCGGTGGTTCGAAGTATATTTTGGCTGATGCTCAGGTAGCTCGTATATCTGATTTTGGAAGGAGTGACACGATATTTTCCATAAGAACCCATCTAGGTCATATTCTGGAGCCTGGGGATAATGCCTTTGGTTATGATCTGTATGGAGCCAATAGTAATGCCTTTGGTTATGATCTGTATAAGGGGCTTCAGATTCCAGAAGCAATTCTAATCAAGAAGAGTTACGAAGAAAAGCGTCGGAGAAAGCATGGAAAGCCTAGATCATGGAAGCTTAAATCTCTTGAAACGGATGTGGATGATAAAGATAATAGTAGAGCTGAGCGGGATAAGAGGAACTCGGAATATGAACAGTTTTTAAGAGATTTGGAGGAGAATCCAGAGATGAGGTTCAACATATCATTGTACCGAAATGGAGAATACCAAACTTCTGAAAGGACTGATGGAGAAGGCGTACCTTTGGTACCAGTTGAGGAGTTGCTTGCTGTTCTTGATATTAATGAAGAGAATGGAGACGATGACATGCACGAGTAA

Protein sequence

MSRDAEWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIVICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVGGSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKGLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE

Homology

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BLAST of Sed0001234 vs. NCBI nr
Match: XP_022938070.1 (60S ribosomal export protein NMD3-like [Cucurbita moschata])

HSP 1 Score: 573.2 bits (1476), Expect = 1.6e-159
Identity = 281/354 (79.38%), Postives = 313/354 (88.42%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKH AA NA+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHSAAANAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           +GKVAPIR   DK+LVSHD+KSN HNY+HTFSVE+SPICREDLICLPP  AV LGN+GP+
Sbjct: 214 IGKVAPIRSRQDKQLVSHDSKSNVHNYKHTFSVELSPICREDLICLPPKVAVSLGNIGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN + LLDPLTLRH FLDA+QYWRTSFK LLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNSVALLDPLTLRHCFLDAEQYWRTSFKPLLTSRQLVEYIVLDIENVSTEVNVS 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKYILADAQ+AR+SDFGR+DTIF+IRTHLGHIL PGD A GYDLY ANSN    + YKG
Sbjct: 334 GSKYILADAQIARVSDFGRNDTIFNIRTHLGHILNPGDYALGYDLYRANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           LQ+PEAILIKKSYEEKR+RK GKPRSWKLKSLE DVDDKD  RAE+DK + EYEQFLRDL
Sbjct: 394 LQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLEMDVDDKDQGRAEQDKMHLEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E +GD+ MHE
Sbjct: 454 EENPDLRFNISLYRNREYQPSEMTDGEDGPSVPLEELLADLDLSEGDGDNGMHE 507

[Close]

BLAST of Sed0001234 vs. NCBI nr
Match: XP_022965515.1 (60S ribosomal export protein NMD3-like [Cucurbita maxima])

HSP 1 Score: 571.2 bits (1471), Expect = 6.1e-159
Identity = 280/354 (79.10%), Postives = 313/354 (88.42%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKH AA NA+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHSAAANAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           +GKVAPIR   DK+LVSHD+KSN HNY+HTFSVE+SPICREDLICLPP  AV LGN+GP+
Sbjct: 214 IGKVAPIRSRQDKQLVSHDSKSNVHNYKHTFSVELSPICREDLICLPPKVAVSLGNIGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN ++LLDPLTLRH FLDA+QYWRTSFK LLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNSVSLLDPLTLRHCFLDAEQYWRTSFKPLLTSRQLVEYIVLDIENVSTEVNVS 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKYILADAQ+AR+SDFGR+DTIF+IRTHLGHIL PGD A GYDLY ANSN    + YKG
Sbjct: 334 GSKYILADAQIARVSDFGRNDTIFNIRTHLGHILNPGDYALGYDLYRANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           LQ+PEAILIKKSYEEKR+RK GKPRSWKLKSL  DVDDKD  RAE+DK +SEYEQFLRDL
Sbjct: 394 LQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLAMDVDDKDQGRAEQDKMHSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYR+ EYQ SE TDGE  P VP+EELLA LD++E  GD+ MHE
Sbjct: 454 EENPDLRFNISLYRDREYQPSEMTDGEDGPSVPLEELLADLDLSEGGGDNGMHE 507

[Close]

BLAST of Sed0001234 vs. NCBI nr
Match: KAG6586102.1 (60S ribosomal export protein NMD3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020926.1 60S ribosomal export protein NMD3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 571.2 bits (1471), Expect = 6.1e-159
Identity = 280/354 (79.10%), Postives = 313/354 (88.42%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKH AA NA+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHSAAANAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           +GKVAPIR   DK+LVSHD+KSN HNY+HTFSVE+SPICREDLICLPP  AV LGN+GP+
Sbjct: 214 IGKVAPIRSRQDKQLVSHDSKSNVHNYKHTFSVELSPICREDLICLPPKVAVSLGNIGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN + LLDPLTLRH FLDA+QYWRTSFK LLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNSVALLDPLTLRHCFLDAEQYWRTSFKPLLTSRQLVEYIVLDIENVSTEVNVS 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKYILADAQ+AR+SDFGR+DTIF+IRTHLGHIL PGD A GYDLY ANSN    + YKG
Sbjct: 334 GSKYILADAQIARVSDFGRNDTIFNIRTHLGHILNPGDYALGYDLYRANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           LQ+PEAILIKKSYEEKR+RK GKPRSWKLKSLE +VDDKD  RAE+DK +SEYEQFLRDL
Sbjct: 394 LQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLEMEVDDKDQGRAEQDKMHSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++  +GD+ MHE
Sbjct: 454 EENPDLRFNISLYRNREYQPSEMTDGEDGPSVPLEELLADLDLSGGDGDNGMHE 507

[Close]

BLAST of Sed0001234 vs. NCBI nr
Match: XP_022149109.1 (60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149123.1 60S ribosomal export protein NMD3 [Momordica charantia])

HSP 1 Score: 565.5 bits (1456), Expect = 3.4e-157
Identity = 279/354 (78.81%), Postives = 311/354 (87.85%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKHGAA +A+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           VGKVAPIR  HDK+LVSHD KSN HN++HTFSVEI PICREDLICLPP  AV LGNLGP+
Sbjct: 214 VGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEICPICREDLICLPPKVAVSLGNLGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN I LLDP TLRH FLDADQYWRTSF+SLLTSRQLVEY ++DI+N S EVNVG
Sbjct: 274 VICTKVTNSIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIILDIENVSAEVNVG 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKY+LADAQVAR+SDFGR+DTIFSIRTHLGHIL PGD A GYDLY ANSN    D YKG
Sbjct: 334 GSKYVLADAQVARVSDFGRNDTIFSIRTHLGHILNPGDYALGYDLYAANSNDMELDKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           L +PEAIL+KKSYEEKR+RK GKPR+WKLKSL+ DVDDK   R ++DK NSEYEQFLRDL
Sbjct: 394 LVLPEAILVKKSYEEKRQRKRGKPRAWKLKSLDMDVDDK--GRVDQDKMNSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E++ DD M+E
Sbjct: 454 EENPDLRFNISLYRNREYQLSEMTDGEDGPSVPLEELLADLDLSEQDEDDGMNE 505

[Close]

BLAST of Sed0001234 vs. NCBI nr
Match: XP_004143504.1 (60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical protein Csa_003669 [Cucumis sativus])

HSP 1 Score: 564.3 bits (1453), Expect = 7.5e-157
Identity = 280/354 (79.10%), Postives = 312/354 (88.14%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKHGAA +A+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           VGKVAPIR  HDK+LVSHD KSN HN++HTFSVEISPICREDLICLPP  AV LGNLGP+
Sbjct: 214 VGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN I LLDP TLRH FLDADQYWRTSF+SLLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNAIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVA 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKY+LA AQVAR+SDFGR+DT+FSI+THLGHIL PGD A GYDLYGANSN    + YKG
Sbjct: 334 GSKYMLAYAQVARVSDFGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           L++PEAILIKKSYEEKR+RKHGKPRSWKLKSL  DVDDK  ++ + +K NSEYEQFLRDL
Sbjct: 394 LELPEAILIKKSYEEKRQRKHGKPRSWKLKSLSMDVDDK--TKVDENKMNSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E  GDD M+E
Sbjct: 454 EENPDLRFNISLYRNREYQPSEITDGEDGPSVPLEELLADLDLSEGEGDDAMNE 505

[Close]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot
Match: Q55BF2 (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.2e-67
Identity = 142/368 (38.59%), Postives = 227/368 (61.68%), Query Frame = 0


Query: 7   WVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFV 66
           W + VQL+Q V H+RTFL++EQLILKH A    + IK+   G+DFFFSNR+H +KFVEF+
Sbjct: 149 WNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFI 208

Query: 67  GKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIV 126
             + P++    ++L+S D ++N  NY++TFSVEI P+ ++D++CLPP  A +LGN+GP+V
Sbjct: 209 SAITPVKTKKSEQLISSDEQNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLV 268

Query: 127 ICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVGG 186
           + T+V+N+I  +DP TL    + A  +W + F++L + +QLVE+ V+D+  T        
Sbjct: 269 VVTKVSNLIHFIDPNTLHTGEISALTFWNSPFRALSSYKQLVEFTVLDVNLTGAT----R 328

Query: 187 SKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDL---Y 246
            +Y L+D Q+ R +DFG +D I+ IR+HLG+IL PGD A GYD+  A+SN    DL    
Sbjct: 329 GRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPGDLALGYDV--ASSNFPDSDLAGMK 388

Query: 247 KGLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLR 306
           K  Q+P+ +L+KK+Y  K   +    R W  K +  +   ++  + E D+   + E+FLR
Sbjct: 389 KNQQLPDFVLVKKTYPSKNDFRF--KRHWYFKEIPKE-GIENPKKFEIDQMERDREEFLR 448

Query: 307 DLEENPEMRFNISLYRNGE-----YQTSERTDGEGVPLVPVEELLAV----------LDI 357
           ++E +PE+R  I++Y+  +      Q  ++    G+    ++E LA+          L I
Sbjct: 449 EIEADPELRSKINIYKEADAANILQQRIKKMQEHGIDEDAIKEELALDGLLDDMVNNLTI 507

[Close]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot
Match: Q6GNS3 (60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.6e-67
Identity = 136/350 (38.86%), Postives = 211/350 (60.29%), Query Frame = 0


Query: 7   WVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFV 66
           W A VQ++Q V H++TF +LEQ ILKH    N +R+K++  G+DF+++++ HG K VEF+
Sbjct: 153 WKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFL 212

Query: 67  GKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIV 126
               P R    +RL+SHD  +N +NY+ TFSVEI P+C+++L+CL P  A  LGN+  I 
Sbjct: 213 QCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQIC 272

Query: 127 ICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVID---IKNTSTEVN 186
           IC  VT+ I L+DP TL+ + +D + YWR  F SL   +Q+ E+ V+D   I++      
Sbjct: 273 ICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPKQMEEFIVMDTEIIRDRKQAAG 332

Query: 187 VG--GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYD 246
            G   +K++LA+  V + S+   +   +  RTHLGH+L PGD   G+DL   N N    +
Sbjct: 333 AGMRSNKHVLAEVWVQKTSEMNTTQQ-YHCRTHLGHLLNPGDLVLGFDLSNCNLNDEFIN 392

Query: 247 LYKGLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQF 306
                 IP+ +LIKKSY+  RR++    R+WKLK ++ D +  D      D+R  +Y+ F
Sbjct: 393 KMNPHHIPDVVLIKKSYDRARRQRR---RNWKLKEMDRDREGMDTD----DER--QYQDF 452

Query: 307 LRDLEENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEE 352
           L DLEE+  +R N+++++N        TD EG P + + E+L  L I+++
Sbjct: 453 LEDLEEDELLRKNVNIFKNANVPVESDTDEEGAPRISLAEMLEDLHISQD 492

[Close]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot
Match: Q6P2Z6 (60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.6e-67
Identity = 136/348 (39.08%), Postives = 208/348 (59.77%), Query Frame = 0


Query: 7   WVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFV 66
           W A VQ++Q V H++TF +LEQ ILKH    N +R+K++  G+DF+++++ H  K VEF+
Sbjct: 153 WKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFL 212

Query: 67  GKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIV 126
               P R    +RL+SHD  +N +NY+ TFSVEI P+C+++L+CL P  A  LGN+  I 
Sbjct: 213 QCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQIC 272

Query: 127 ICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDI-----KNTSTE 186
           IC  VT+ I L+DP TL+ + +D + YWR+ F SL   +QL E+ V+D      +  +  
Sbjct: 273 ICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHPKQLEEFIVMDTDIVRDRKQAAG 332

Query: 187 VNVGGSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYD 246
             +  +K+ILA+  V + S+   +   +  RTHLGH+L PGD   G+DL   N N    +
Sbjct: 333 AGMRSNKHILAEVWVQKTSEMNTTQQ-YHCRTHLGHLLNPGDLVLGFDLANCNLNDEFIN 392

Query: 247 LYKGLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQF 306
                 IP+ +LIKKSY+  +R++    R+WKLK +E D +  D      D+R  +Y+ F
Sbjct: 393 KMNPHHIPDVVLIKKSYDRTKRQRR---RNWKLKEIERDREGMDTD----DER--QYQDF 452

Query: 307 LRDLEENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDIN 350
           L DLEE+  +R N+++Y+N        TD EG P + + E+L  L I+
Sbjct: 453 LEDLEEDEVIRKNVNIYKNANLPVESDTDEEGAPRISLAEMLEDLHIS 490

[Close]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot
Match: Q08DS5 (60S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.3e-66
Identity = 140/351 (39.89%), Postives = 211/351 (60.11%), Query Frame = 0


Query: 7   WVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFV 66
           W A VQ++Q   H++TF +LEQLILK+G   N +RIK++  G+DF++S++ H  K VEF+
Sbjct: 153 WKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFL 212

Query: 67  GKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIV 126
               P R    +RL+S D  SNT+NY+ TFSVEI PIC+++++CL P  A  LGN+  I 
Sbjct: 213 QCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQIC 272

Query: 127 ICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVI------DIKNTST 186
           +C  VT+VI L+DP TL+ + +D + +W   F SL   +QL E+ V+      DIK  S 
Sbjct: 273 VCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVMECSIVQDIKR-SA 332

Query: 187 EVNVGGSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGY 246
              +   K+ L +  V + S+   +D  +  RTHLGH+L PGD   G+DL   N N    
Sbjct: 333 GAGMISKKHTLGEVWVQKTSEM-NTDKQYFCRTHLGHLLNPGDLVLGFDLVNCNLNDEHV 392

Query: 247 DLYKGLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQ 306
           +  K  ++P+ +LIKKSY+  RR++    R+WKLK L  D ++ D      D+R  +Y+ 
Sbjct: 393 NKMKSDRVPDVVLIKKSYDRTRRQRR---RNWKLKELARDRENTDTD----DER--QYQD 452

Query: 307 FLRDLEENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEE 352
           FL DLEE+  +R N+++YR+        TD EG P + + E+L  L I+++
Sbjct: 453 FLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEMLEDLHISQD 492

[Close]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot
Match: G0S488 (60S ribosomal export protein NMD3 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=NMD3 PE=3 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 2.8e-66
Identity = 133/340 (39.12%), Postives = 199/340 (58.53%), Query Frame = 0


Query: 7   WVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEFV 66
           W A VQ++Q V H+RTFL LEQLILKH A  + + IK+   G+DFFF+ R+    FV F+
Sbjct: 161 WRAVVQVRQKVTHKRTFLLLEQLILKHQAHKDTINIKEEKDGVDFFFAQRNQAEAFVHFL 220

Query: 67  GKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPIV 126
             V PI     + L+S D  +    Y+ T+S EI PICR+DL+ LP   A ++GN+ P+ 
Sbjct: 221 KSVVPITLKDSRHLISQDTHTGDKQYKFTYSAEIIPICRDDLVALPLKLAKQIGNIPPLC 280

Query: 127 ICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVGG 186
           +C  +   + LLDP TL  + L +D YWR  F+ L  +  +VE+ V+DI+ T     +  
Sbjct: 281 LCYRIGTAVYLLDPNTLHTAELSSDVYWRQPFRPLADATSMVEFIVMDIEAT----GIRK 340

Query: 187 SKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYK-- 246
            K++LA+  VAR SD G +D ++  RTHLGH+L PGD+  GY L G N N+  +D  +  
Sbjct: 341 GKWVLAEVTVARASDLGVNDNVYFTRTHLGHLLHPGDSVMGYMLTGTNFNSDTFDAIENS 400

Query: 247 ---GLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQF 306
              G  IP+ +L+KK Y  +RR +    R+WKLK L  D  +      ++ + + EYE F
Sbjct: 401 RQYGSTIPDVVLVKKHYPNRRRNRR---RNWKLKRLPKDEGELLPKATDQARMDDEYEAF 460

Query: 307 LRDLEENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEE 342
           LRD+EE+ E+R  ++LY+N       + D + + +   E+
Sbjct: 461 LRDVEEDEELRATLALYKNTRKTKKPQQDADAMSIAETED 493

[Close]

BLAST of Sed0001234 vs. ExPASy TrEMBL
Match: A0A6J1FIM4 (60S ribosomal export protein NMD3 OS=Cucurbita moschata OX=3662 GN=LOC111444268 PE=3 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 7.8e-160
Identity = 281/354 (79.38%), Postives = 313/354 (88.42%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKH AA NA+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHSAAANAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           +GKVAPIR   DK+LVSHD+KSN HNY+HTFSVE+SPICREDLICLPP  AV LGN+GP+
Sbjct: 214 IGKVAPIRSRQDKQLVSHDSKSNVHNYKHTFSVELSPICREDLICLPPKVAVSLGNIGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN + LLDPLTLRH FLDA+QYWRTSFK LLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNSVALLDPLTLRHCFLDAEQYWRTSFKPLLTSRQLVEYIVLDIENVSTEVNVS 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKYILADAQ+AR+SDFGR+DTIF+IRTHLGHIL PGD A GYDLY ANSN    + YKG
Sbjct: 334 GSKYILADAQIARVSDFGRNDTIFNIRTHLGHILNPGDYALGYDLYRANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           LQ+PEAILIKKSYEEKR+RK GKPRSWKLKSLE DVDDKD  RAE+DK + EYEQFLRDL
Sbjct: 394 LQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLEMDVDDKDQGRAEQDKMHLEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E +GD+ MHE
Sbjct: 454 EENPDLRFNISLYRNREYQPSEMTDGEDGPSVPLEELLADLDLSEGDGDNGMHE 507

[Close]

BLAST of Sed0001234 vs. ExPASy TrEMBL
Match: A0A6J1HNX8 (60S ribosomal export protein NMD3 OS=Cucurbita maxima OX=3661 GN=LOC111465396 PE=3 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 3.0e-159
Identity = 280/354 (79.10%), Postives = 313/354 (88.42%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKH AA NA+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHSAAANAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           +GKVAPIR   DK+LVSHD+KSN HNY+HTFSVE+SPICREDLICLPP  AV LGN+GP+
Sbjct: 214 IGKVAPIRSRQDKQLVSHDSKSNVHNYKHTFSVELSPICREDLICLPPKVAVSLGNIGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN ++LLDPLTLRH FLDA+QYWRTSFK LLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNSVSLLDPLTLRHCFLDAEQYWRTSFKPLLTSRQLVEYIVLDIENVSTEVNVS 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKYILADAQ+AR+SDFGR+DTIF+IRTHLGHIL PGD A GYDLY ANSN    + YKG
Sbjct: 334 GSKYILADAQIARVSDFGRNDTIFNIRTHLGHILNPGDYALGYDLYRANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           LQ+PEAILIKKSYEEKR+RK GKPRSWKLKSL  DVDDKD  RAE+DK +SEYEQFLRDL
Sbjct: 394 LQLPEAILIKKSYEEKRQRKRGKPRSWKLKSLAMDVDDKDQGRAEQDKMHSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYR+ EYQ SE TDGE  P VP+EELLA LD++E  GD+ MHE
Sbjct: 454 EENPDLRFNISLYRDREYQPSEMTDGEDGPSVPLEELLADLDLSEGGGDNGMHE 507

[Close]

BLAST of Sed0001234 vs. ExPASy TrEMBL
Match: A0A6J1D613 (60S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597 PE=3 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.6e-157
Identity = 279/354 (78.81%), Postives = 311/354 (87.85%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKHGAA +A+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           VGKVAPIR  HDK+LVSHD KSN HN++HTFSVEI PICREDLICLPP  AV LGNLGP+
Sbjct: 214 VGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEICPICREDLICLPPKVAVSLGNLGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN I LLDP TLRH FLDADQYWRTSF+SLLTSRQLVEY ++DI+N S EVNVG
Sbjct: 274 VICTKVTNSIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIILDIENVSAEVNVG 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKY+LADAQVAR+SDFGR+DTIFSIRTHLGHIL PGD A GYDLY ANSN    D YKG
Sbjct: 334 GSKYVLADAQVARVSDFGRNDTIFSIRTHLGHILNPGDYALGYDLYAANSNDMELDKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           L +PEAIL+KKSYEEKR+RK GKPR+WKLKSL+ DVDDK   R ++DK NSEYEQFLRDL
Sbjct: 394 LVLPEAILVKKSYEEKRQRKRGKPRAWKLKSLDMDVDDK--GRVDQDKMNSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E++ DD M+E
Sbjct: 454 EENPDLRFNISLYRNREYQLSEMTDGEDGPSVPLEELLADLDLSEQDEDDGMNE 505

[Close]

BLAST of Sed0001234 vs. ExPASy TrEMBL
Match: A0A0A0KGY6 (60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.6e-157
Identity = 280/354 (79.10%), Postives = 312/354 (88.14%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKHGAA +A+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           VGKVAPIR  HDK+LVSHD KSN HN++HTFSVEISPICREDLICLPP  AV LGNLGP+
Sbjct: 214 VGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN I LLDP TLRH FLDADQYWRTSF+SLLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNAIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVA 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKY+LA AQVAR+SDFGR+DT+FSI+THLGHIL PGD A GYDLYGANSN    + YKG
Sbjct: 334 GSKYMLAYAQVARVSDFGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           L++PEAILIKKSYEEKR+RKHGKPRSWKLKSL  DVDDK  ++ + +K NSEYEQFLRDL
Sbjct: 394 LELPEAILIKKSYEEKRQRKHGKPRSWKLKSLSMDVDDK--TKVDENKMNSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP+EELLA LD++E  GDD M+E
Sbjct: 454 EENPDLRFNISLYRNREYQPSEITDGEDGPSVPLEELLADLDLSEGEGDDAMNE 505

[Close]

BLAST of Sed0001234 vs. ExPASy TrEMBL
Match: A0A5D3CM67 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002220 PE=3 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 4.0e-156
Identity = 279/354 (78.81%), Postives = 311/354 (87.85%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA+VQL+QHVPHRRTF FLEQLILKHGAA +A+RIKQMDQGIDFFFSNRSHGVKFVEF
Sbjct: 154 QWVASVQLRQHVPHRRTFFFLEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEF 213

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           VGKVAPIR  HDK+LVSHD KSN HN++HTFSVEISPICREDLICLPP  AV LGNLGP+
Sbjct: 214 VGKVAPIRSRHDKQLVSHDPKSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPL 273

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           VICT+VTN I LLDP TLRH FLDADQYWRTSF+SLLTSRQLVEY V+DI+N STEVNV 
Sbjct: 274 VICTKVTNAIALLDPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVA 333

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYKG 245
           GSKY+LA AQVAR+SDFGR+DT+FSI+THLGHIL PGD A GYDLYGANSN    + YKG
Sbjct: 334 GSKYMLAYAQVARVSDFGRNDTMFSIKTHLGHILNPGDYALGYDLYGANSNDMELEKYKG 393

Query: 246 LQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFLRDL 305
           L++PEAILIKKSYEEKR+RK GKPRSWKLKSL  DVDDK  S+ + +K NSEYEQFLRDL
Sbjct: 394 LELPEAILIKKSYEEKRQRKRGKPRSWKLKSLAMDVDDK--SKVDENKMNSEYEQFLRDL 453

Query: 306 EENPEMRFNISLYRNGEYQTSERTDGEGVPLVPVEELLAVLDINEENGDDDMHE 360
           EENP++RFNISLYRN EYQ SE TDGE  P VP++ELLA LD++E  GDD M+E
Sbjct: 454 EENPDLRFNISLYRNREYQPSEITDGEDGPSVPLDELLADLDLSEGEGDDAMNE 505

[Close]

BLAST of Sed0001234 vs. TAIR 10
Match: AT2G03820.1 (nonsense-mediated mRNA decay NMD3 family protein )

HSP 1 Score: 418.3 bits (1074), Expect = 6.2e-117
Identity = 213/357 (59.66%), Postives = 270/357 (75.63%), Query Frame = 0


Query: 6   EWVAAVQLKQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGIDFFFSNRSHGVKFVEF 65
           +WVA++QL+QHV HRRTF +LEQLIL+H AA  A+RI+Q+DQGIDFFF N+SH   FVEF
Sbjct: 156 QWVASIQLRQHVSHRRTFFYLEQLILRHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEF 215

Query: 66  VGKVAPIRGHHDKRLVSHDAKSNTHNYEHTFSVEISPICREDLICLPPIDAVRLGNLGPI 125
           + KV PI    D++LVSHD KS+ +NY++T+SV+I P+CREDL+CLP   A  LGNLGP+
Sbjct: 216 LRKVVPIEYRQDQQLVSHDVKSSLYNYKYTYSVKICPVCREDLVCLPSKVASGLGNLGPL 275

Query: 126 VICTEVTNVITLLDPLTLRHSFLDADQYWRTSFKSLLTSRQLVEYFVIDIKNTSTEVNVG 185
           V+CT+V++ ITLLDP TLR +FLDA QYWR+ F+S LTSRQLV+YFV D++    E  VG
Sbjct: 276 VVCTKVSDNITLLDPRTLRCAFLDARQYWRSGFRSALTSRQLVKYFVFDVEPPVGEATVG 335

Query: 186 GSKYILADAQVARISDFGRSDTIFSIRTHLGHILEPGDNAFGYDLYGANSNAFGYDLYK- 245
           G KY L+  Q+AR SD G+   +F ++THLGHIL+PGD A GYD+YGAN N    + Y+ 
Sbjct: 336 GQKYALSYVQIARESDIGK---MFYVQTHLGHILKPGDQALGYDIYGANVNDNEMEKYRL 395

Query: 246 --GLQIPEAILIKKSYEEKRRRKHGKPRSWKLKSLETDVDDKDNSRAERDKRNSEYEQFL 305
                +PEAILIKK YEE+R RK  K R+WKLKSL  ++DD    R + +K + EYE+FL
Sbjct: 396 SVKNGLPEAILIKKCYEEQRERKQKKSRNWKLKSLPMEMDD-SRGRVDPEKTDKEYEEFL 455

Query: 306 RDLEENPEMRFNISLYRNGEYQTSE---RTDGEGVPLVPVEELLAVLDINEENGDDD 357
           RDLEENPE+RFNISLYR+ +YQ SE    TDGEG P VP+EELLA LD++ E  DDD
Sbjct: 456 RDLEENPELRFNISLYRDKDYQASETASMTDGEGAPSVPIEELLADLDLSFEEEDDD 508

The following BLAST results are available for this feature:

BLAST of Sed0001234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938070.1	1.6e-159	79.38	60S ribosomal export protein NMD3-like [Cucurbita moschata]	[more]
XP_022965515.1	6.1e-159	79.10	60S ribosomal export protein NMD3-like [Cucurbita maxima]	[more]
KAG6586102.1	6.1e-159	79.10	60S ribosomal export protein NMD3, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022149109.1	3.4e-157	78.81	60S ribosomal export protein NMD3 [Momordica charantia] >XP_022149117.1 60S ribo...	[more]
XP_004143504.1	7.5e-157	79.10	60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical pro...	[more]

BLAST of Sed0001234 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55BF2	1.2e-67	38.59	60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 P...	[more]
Q6GNS3	2.6e-67	38.86	60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1	[more]
Q6P2Z6	2.6e-67	39.08	60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=...	[more]
Q08DS5	1.3e-66	39.89	60S ribosomal export protein NMD3 OS=Bos taurus OX=9913 GN=NMD3 PE=2 SV=1	[more]
G0S488	2.8e-66	39.12	60S ribosomal export protein NMD3 OS=Chaetomium thermophilum (strain DSM 1495 / ...	[more]

BLAST of Sed0001234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIM4	7.8e-160	79.38	60S ribosomal export protein NMD3 OS=Cucurbita moschata OX=3662 GN=LOC111444268 ...	[more]
A0A6J1HNX8	3.0e-159	79.10	60S ribosomal export protein NMD3 OS=Cucurbita maxima OX=3661 GN=LOC111465396 PE...	[more]
A0A6J1D613	1.6e-157	78.81	60S ribosomal export protein NMD3 OS=Momordica charantia OX=3673 GN=LOC111017597...	[more]
A0A0A0KGY6	3.6e-157	79.10	60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=...	[more]
A0A5D3CM67	4.0e-156	78.81	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0001234 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03820.1	6.2e-117	59.66	nonsense-mediated mRNA decay NMD3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007064	Nmd3, N-terminal	PFAM	PF04981	NMD3	coord: 5..100 e-value: 7.9E-25 score: 87.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..301
None	No IPR available	PANTHER	PTHR12746:SF4	60S RIBOSOMAL EXPORT PROTEIN NMD3	coord: 6..356
IPR039768	Ribosomal export protein Nmd3	PANTHER	PTHR12746	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3	coord: 6..356

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001234.1	Sed0001234.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0000055	ribosomal large subunit export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043023	ribosomal large subunit binding