Sed0001091 (gene) Chayote v1

Overview


Name	Sed0001091
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	LG11: 30306491 .. 30307179 (-)
RNA-Seq Expression	Sed0001091
Synteny	Sed0001091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATGTCTAAATAAAAACTTCAAATTTTGGCAAATTTTTTTCAAAAACATTACAGCCTTAACATTATGTGCTTAAACCCATAACACATTCACCAAAAAAAAAAAATCTTTCCTTTTTTTTCCCTTTCATTTTCTCGGGAAACAAACACTCCCAAAAACCCACCACCGTTTCACGGCGACGGAATGACATTACTACGAACCCAACCCTGCCGTCGCCGCCACGCCGGAGCCACCGCCACCGCCACAAACGCCGCGCTTCTTCTTTTCTTCTGGGTCATTCTCCTTTTAGCTCCGGCCAGTCTCTGCCTCCACCAACCGCCGCCGTCGAGAAAATTAGTCCGACTCTCCACGGCGGCGCTTCCGCATGCACCGCCACCAGCTGAGCTCCTCGGCCGCCGTACCGCATCCACCGGCGCCGCCGCGTACGGCGACGACAAGCGGCTAATCCATACGGGTCCGAATCCTCTTCACAACTAAATTTCATCAATTTTTTTTTTTTGTTAAATTTATGAATATTTTAGAAGATGGGTAGATTTTAGATCTTGGTGTTGAACAACTTTTTTGGGTTTTTTTTTCTTTTAATTTTGTTGTGGAGAAGAAATTAGAGCATAAAAAATTAGCTTTCTGAGAGAAATTAATTTTGAAGGCTAATTGTTTGATGCTCTTTGTTTCTTTCTATCTAATCCTAC

mRNA sequence

AGAATGTCTAAATAAAAACTTCAAATTTTGGCAAATTTTTTTCAAAAACATTACAGCCTTAACATTATGTGCTTAAACCCATAACACATTCACCAAAAAAAAAAAATCTTTCCTTTTTTTTCCCTTTCATTTTCTCGGGAAACAAACACTCCCAAAAACCCACCACCGTTTCACGGCGACGGAATGACATTACTACGAACCCAACCCTGCCGTCGCCGCCACGCCGGAGCCACCGCCACCGCCACAAACGCCGCGCTTCTTCTTTTCTTCTGGGTCATTCTCCTTTTAGCTCCGGCCAGTCTCTGCCTCCACCAACCGCCGCCGTCGAGAAAATTAGTCCGACTCTCCACGGCGGCGCTTCCGCATGCACCGCCACCAGCTGAGCTCCTCGGCCGCCGTACCGCATCCACCGGCGCCGCCGCGTACGGCGACGACAAGCGGCTAATCCATACGGGTCCGAATCCTCTTCACAACTAAATTTCATCAATTTTTTTTTTTTGTTAAATTTATGAATATTTTAGAAGATGGGTAGATTTTAGATCTTGGTGTTGAACAACTTTTTTGGGTTTTTTTTTCTTTTAATTTTGTTGTGGAGAAGAAATTAGAGCATAAAAAATTAGCTTTCTGAGAGAAATTAATTTTGAAGGCTAATTGTTTGATGCTCTTTGTTTCTTTCTATCTAATCCTAC

Coding sequence (CDS)

ATGACATTACTACGAACCCAACCCTGCCGTCGCCGCCACGCCGGAGCCACCGCCACCGCCACAAACGCCGCGCTTCTTCTTTTCTTCTGGGTCATTCTCCTTTTAGCTCCGGCCAGTCTCTGCCTCCACCAACCGCCGCCGTCGAGAAAATTAGTCCGACTCTCCACGGCGGCGCTTCCGCATGCACCGCCACCAGCTGAGCTCCTCGGCCGCCGTACCGCATCCACCGGCGCCGCCGCGTACGGCGACGACAAGCGGCTAATCCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTLLRTQPCRRRHAGATATATNAALLLFFWVILLLAPASLCLHQPPPSRKLVRLSTAALPHAPPPAELLGRRTASTGAAAYGDDKRLIHTGPNPLHN

Homology

[Close]

BLAST of Sed0001091 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 4  LRTQPCRRRHAGATATATNAALLLFFWVILLLAPA--SLCLHQPPPSRKLVRLSTAALPH 63
          +RT  C R  AGAT   T  AL+LF WV+L+LAPA  +LC   PP  RKLVR STA+  H
Sbjct: 3  VRTVTCSRHGAGAT---TTTALVLFLWVLLILAPATTTLCFQLPPSPRKLVRFSTASFRH 62

Query: 64 APP---PAELLGRRTASTG-AAAYGDDKRLIHTGPNPLHN 98
          APP   PAELL RR +S G AAAYGD+KRLIHTGPNPLHN
Sbjct: 63 APPATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 54/86 (62.79%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 16 ATATATNAALLLFFWVILLLAPASLCLHQPPP---SRKLVRLSTAALPHAPPPAELLGRR 75
          A+A  T  A LLFFWV+L+  P +LCLH PPP   SRKLV  STA+L HA  P ELL  R
Sbjct: 7  ASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPPELLHHR 66

Query: 76 -TASTGAAAYGDDKRLIHTGPNPLHN 98
           T++  AA Y DDKRLIHTGPNPLHN
Sbjct: 67 PTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of Sed0001091 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 24 ALLLFFWVILLLAPASLCLH---QPPPSRKLVRLSTAALPHAPP-----PAELLGRRTAS 83
          ALLLFFWV+L+LAP +LCLH    PPPSRKL R STA+  HAPP     PAELL RR   
Sbjct: 18 ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQP- 77

Query: 84 TGAAAYGDDKRLIHTGPNPLHN 98
            A+AY +DKRLIHTGPNPLHN
Sbjct: 78 --ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Sed0001091 vs. NCBI nr
Match: KAG7032578.1 (hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 55/87 (63.22%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 16 ATATATNAALLLFFWVILLLAPASLCLHQPPP---SRKLVRLSTAALPHAPPPAELLGRR 75
          A+A  T  A LLFFWV+L+  P +LCLH PPP   SRKLV  STA+L HA  P ELL  R
Sbjct: 7  ASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPPELLHHR 66

Query: 76 TASTGAAA--YGDDKRLIHTGPNPLHN 98
            S  AAA  Y DDKRLIHTGPNPLHN
Sbjct: 67 PTSAAAAAAVYTDDKRLIHTGPNPLHN 93

[Close]

BLAST of Sed0001091 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 24 ALLLFFWVILLLAPASLCLH---QPPPSRKLVRLSTAALPHAPP-----PAELLGRRTAS 83
          AL LFFWV+L+ AP +LCLH    PPPSRKL R STA   HAPP     PAEL  R  ++
Sbjct: 18 ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQSA 77

Query: 84 TGAAAYGDDKRLIHTGPNPLHN 98
            AAAYG++KRLIHTGPNPLHN
Sbjct: 78 AVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-04
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 53 RLSTAALPHAPPPAELLGRRTAS-----TGAAAYGDDKRLIHTGPNPLHN 98
          RL   A P  PPP + L   TA      +    YGDDKR++HTGPNPLHN
Sbjct: 50 RLHLVASPPPPPPRKALRYSTAPFRGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 24 ALLLFFWVILLLAPASLCLH---QPPPSRKLVRLSTAALPHAPP-----PAELLGRRTAS 83
          ALLLFFWV+L+LAP +LCLH    PPPSRKL R STA+  HAPP     PAELL RR   
Sbjct: 18 ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQP- 77

Query: 84 TGAAAYGDDKRLIHTGPNPLHN 98
            A+AY +DKRLIHTGPNPLHN
Sbjct: 78 --ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Sed0001091 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 24 ALLLFFWVILLLAPASLCLH---QPPPSRKLVRLSTAALPHAPP-----PAELLGRRTAS 83
          ALLLFFWV+L+LAP +LCLH    PPPSRKL R STA+  HAPP     PAELL RR   
Sbjct: 18 ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQP- 77

Query: 84 TGAAAYGDDKRLIHTGPNPLHN 98
            A+AY +DKRLIHTGPNPLHN
Sbjct: 78 --ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of Sed0001091 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-17
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 24 ALLLFFWVILLLAPASLCLH---QPPPSRKLVRLSTAALPHAPP-----PAELLGRRTAS 83
          AL LFFWV+L+ AP +LCLH    PPPSRKL R STA   HAPP     PAEL  R  ++
Sbjct: 18 ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQSA 77

Query: 84 TGAAAYGDDKRLIHTGPNPLHN 98
            AAAYG++KRLIHTGPNPLHN
Sbjct: 78 AVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. ExPASy TrEMBL
Match: A0A2H5Q2V2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_190950 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 10  RRRHAGATATATNAALLLFFWVILLLAPASL--CLHQPP-------PSRKLVRLSTAALP 69
           RRR AGA A +       FFWVIL+ +   L   LH           +RK   ++T +  
Sbjct: 16  RRRCAGAKAAS------FFFWVILIFSLLGLLCALHDDETGTYSSFSARKTRSVNTESTF 75

Query: 70  HAPPPA---ELLGRRTASTGAAAYGDDKRLIHTGPNPLHN 98
           HAPPP+    L+     + G++ Y DDKR+IHTGPNPLHN
Sbjct: 76  HAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of Sed0001091 vs. ExPASy TrEMBL
Match: A0A067FB56 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 10  RRRHAGATATATNAALLLFFWVILLLAPASL--CLHQPP-------PSRKLVRLSTAALP 69
           RRR AGA A +       FFWVIL+ +   L   LH           +RK    +T +  
Sbjct: 27  RRRCAGAKAAS------FFFWVILIFSLLGLLCALHDDETGTYSSFSARKTRSFNTESTF 86

Query: 70  HAPPPA---ELLGRRTASTGAAAYGDDKRLIHTGPNPLHN 98
           HAPPP+    L+     + G++ Y DDKR+IHTGPNPLHN
Sbjct: 87  HAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of Sed0001091 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 53 RLSTAALPHAPPPAELLGRRTAS-----TGAAAYGDDKRLIHTGPNPLHN 98
          RL   A P  PPP + L   TA      +    YGDDKR++HTGPNPLHN
Sbjct: 50 RLHLVASPPPPPPRKALRYSTAPFRGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 25/50 (50.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 53 RLSTAALPHAPPPAELLGRRTAS-----TGAAAYGDDKRLIHTGPNPLHN 98
          RL   A P  PPP + L   TA      +    YGDDKR++HTGPNPLHN
Sbjct: 50 RLHLVASPPPPPPRKALRYSTAPFRGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Sed0001091 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 33/97 (34.02%), Postives = 39/97 (40.21%), Query Frame = 0


Query: 10  RRRHAGATATATNAALLLFFWVILLLAPASLCL-------HQPPPSRKLVRLSTAALPHA 69
           +RR   A  T+T     +FF  I + A   +         H P   RK       A   A
Sbjct: 7   KRRRRRAYTTSTTGYAAVFFCGIFVFAQFGISSSALFAPDHYPSLPRKAGHFHEMASFQA 66

Query: 70  PPPAELL--GRRTASTGAAAYGDDKRLIHTGPNPLHN 98
           P         RR        Y DDKRL+HTGPNPLHN
Sbjct: 67  PKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of Sed0001091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016766.1	1.8e-20	64.00	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	3.1e-17	62.79	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_008437694.1	3.1e-17	67.07	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG7032578.1	4.1e-17	63.22	hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011656246.1	7.0e-17	63.41	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]

BLAST of Sed0001091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	2.4e-04	50.00	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of Sed0001091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY55	1.5e-17	67.07	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	1.5e-17	67.07	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A0A0KSY2	3.4e-17	63.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A2H5Q2V2	1.7e-05	41.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_190950 PE=4 SV=1	[more]
A0A067FB56	2.3e-05	41.00	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706m...	[more]

BLAST of Sed0001091 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	1.7e-05	50.00	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.7e-05	50.00	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	9.5e-04	34.02	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..97
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 11..97
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 11..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001091.1	Sed0001091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development