Sed0001064 (gene) Chayote v1

Overview


Name	Sed0001064
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Xyloglucan galactosyltransferase KATAMARI1-like protein
Location	LG09: 24503593 .. 24504226 (-)
RNA-Seq Expression	Sed0001064
Synteny	Sed0001064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGATGGAGGCGGGAGGCGAGGGCAGGGCGTTCGAGAAGGTGAGATTGGGAGGTAGAAGCAGAGGAGCTTCAATGTCAGTCAGCAATGGATGTGAAGGTGAATTGCACAATTGTTACATAAATATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATGGGATCAAAATCACATCCAAATAACAGATTAGTTCATCAAATTCATAATCTATGGCAATGGGGTTTCATGCTGCTTCTTCTTCTTGTAATCTTTGTGTTGGTTTTAAAGATTGGAATGATTCATTCTTAAGAGTGTCTTTTGGTTTTGTTTCAACTCTGAAGTTGATAGAAATGTCATTGGAGTGCAATATTATGATACATATTACGAACCAGGTTTTTATTAGAAAAAAATAATAATAAATATTTAGCAAATACATTGTTATCTCTCAATTTCTTTAGCATATGAAAATGTGGAATTCATTAAGTTAATGGGCGAGGCATTTAAAAACCCCATTTAAGTTTGAGGGCAATTTGGGTGCACTCAGGGCTGCACTCCACCCATGAAGTCACACACACATTTTAATATTTT

mRNA sequence

GATGATGGAGGCGGGAGGCGAGGGCAGGGCGTTCGAGAAGGTGAGATTGGGAGGTAGAAGCAGAGGAGCTTCAATGTCAGTCAGCAATGGATGTGAAGGTGAATTGCACAATTGTTACATAAATATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATGGGATCAAAATCACATCCAAATAACAGATTAGTTCATCAAATTCATAATCTATGGCAATGGGGTTTCATGCTGCTTCTTCTTCTTGTAATCTTTGTGTTGGTTTTAAAGATTGGAATGATTCATTCTTAAGAGTGTCTTTTGGTTTTGTTTCAACTCTGAAGTTGATAGAAATGTCATTGGAGTGCAATATTATGATACATATTACGAACCAGGTTTTTATTAGAAAAAAATAATAATAAATATTTAGCAAATACATTGTTATCTCTCAATTTCTTTAGCATATGAAAATGTGGAATTCATTAAGTTAATGGGCGAGGCATTTAAAAACCCCATTTAAGTTTGAGGGCAATTTGGGTGCACTCAGGGCTGCACTCCACCCATGAAGTCACACACACATTTTAATATTTT

Coding sequence (CDS)

ATGATGGAGGCGGGAGGCGAGGGCAGGGCGTTCGAGAAGGTGAGATTGGGAGGTAGAAGCAGAGGAGCTTCAATGTCAGTCAGCAATGGATGTGAAGGTGAATTGCACAATTGTTACATAAATATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGAAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTGCTTCTTCTTTGGAGATATGGGATCAAAATCACATCCAAATAACAGATTAGTTCATCAAATTCATAATCTATGGCAATGGGGTTTCATGCTGCTTCTTCTTCTTGTAATCTTTGTGTTGGTTTTAAAGATTGGAATGATTCATTCTTAA

Protein sequence

MMEAGGEGRAFEKVRLGGRSRGASMSVSNGCEGELHNCYINIYVNSNIQGVNNSTLNGSEVKMGSPGVCFFFGDMGSKSHPNNRLVHQIHNLWQWGFMLLLLLVIFVLVLKIGMIHS

Homology

[Close]

BLAST of Sed0001064 vs. NCBI nr
Match: KGN46369.1 (hypothetical protein Csa_004893 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 5.8e-26
Identity = 77/123 (62.60%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 2   MEAGGEGRAFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNGSE 61
           MEA  E  A E VRL G + GASMSVS+G E +L N C INIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 62  VKMGSPGVCFFFGDMGSKSHPN-NRLVHQIHNLWQWGFMLLLLL-----VIFVLVLKIGM 118
           VKMGSPGV F FGDM  K H N    +HQ   LWQWG M+LLLL     ++F+L+L+I M
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]

BLAST of Sed0001064 vs. NCBI nr
Match: KAA0039894.1 (xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa] >TYK24608.1 xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 9.3e-16
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2  MEAGGEGRAFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNGSE 61
          MEA GE  A E++RL G + GASMSVS+G E +L N C INIYVNSNIQGVNNSTLNG E
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 62 VKMGSPGVCFFFG 74
          VKMGSPGV F FG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of Sed0001064 vs. NCBI nr
Match: KAG6592845.1 (hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 2  MEAGGEG--RAFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNG 61
          ME G E    AFE+VRLGGR+ GASMSVS+G EG+L N C INIYVNSNIQGVNNSTLNG
Sbjct: 1  MEVGDEDGVGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNG 60

[Close]

BLAST of Sed0001064 vs. NCBI nr
Match: KAG2719359.1 (hypothetical protein I3760_03G263100 [Carya illinoinensis] >KAG6724509.1 hypothetical protein I3842_03G261100 [Carya illinoinensis] >KAG7989769.1 hypothetical protein I3843_03G254400 [Carya illinoinensis])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 10  AFEKVRLGGRSRGASMSVSNG-CEGELHN-CYINIYVNSNIQGVNNSTLNGSEVKMGSPG 69
           +FE V L GR+ GA+M + NG   GE H+ C INIY+N+NIQGVNNS L+GSEVK+  PG
Sbjct: 9   SFEHVNLKGRNIGAAMFMPNGDTRGESHDCCCINIYINNNIQGVNNSILHGSEVKLRDPG 68

Query: 70  VCFFFGDM----GSKSHPNNRLVHQIHNLW--QWGFMLLLLLVIFVLVLKIGMI 116
           V  FFGD+    GSK+  N + V Q +N+     GF L  L VIF L L I ++
Sbjct: 69  VSLFFGDVKLDRGSKT--NKKRVCQENNILGVGLGFCLRFLFVIFSLFLLISLL 120

[Close]

BLAST of Sed0001064 vs. NCBI nr
Match: KAG6662850.1 (hypothetical protein CIPAW_03G271500 [Carya illinoinensis])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 48/89 (53.93%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 10 AFEKVRLGGRSRGASMSVSNG-CEGELHN-CYINIYVNSNIQGVNNSTLNGSEVKMGSPG 69
          +FE V L GR+ GA+M + NG   GE H+ C INIY+N+NIQGVNNS L+GSEVK+  PG
Sbjct: 9  SFEHVNLKGRNIGAAMFMPNGDTRGESHDCCCINIYINNNIQGVNNSILHGSEVKLRDPG 68

Query: 70 VCFFFGDM----GSKSHPNNRLVHQIHNL 93
          V  FFGD+    GSK+  N + V Q +N+
Sbjct: 69 VSLFFGDVKLDRGSKT--NKKRVCQENNI 95

[Close]

BLAST of Sed0001064 vs. ExPASy TrEMBL
Match: A0A0A0KBZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.8e-26
Identity = 77/123 (62.60%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 2   MEAGGEGRAFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNGSE 61
           MEA  E  A E VRL G + GASMSVS+G E +L N C INIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 62  VKMGSPGVCFFFGDMGSKSHPN-NRLVHQIHNLWQWGFMLLLLL-----VIFVLVLKIGM 118
           VKMGSPGV F FGDM  K H N    +HQ   LWQWG M+LLLL     ++F+L+L+I M
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]

BLAST of Sed0001064 vs. ExPASy TrEMBL
Match: A0A5A7T8V9 (Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001550 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.5e-16
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 2  MEAGGEGRAFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNGSE 61
          MEA GE  A E++RL G + GASMSVS+G E +L N C INIYVNSNIQGVNNSTLNG E
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 62 VKMGSPGVCFFFG 74
          VKMGSPGV F FG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of Sed0001064 vs. ExPASy TrEMBL
Match: A0A059A2V7 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01423 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 10  AFEKVRLGGRSRGASMSVSNGCEGE-LHNCYINIYVNSNIQGVNNSTLNGSEVKMGSPGV 69
           +F+ V+L     GA+M V  GC GE   NC +NIY+NSN+QGV+NS L GS+V+MG PGV
Sbjct: 9   SFDHVKLEEMGFGAAMFVHRGCTGESKDNCCVNIYINSNVQGVSNSILVGSDVRMGDPGV 68

Query: 70  CFFFGDMGSKSHPNNRLVHQIHNLWQWG----------FMLLLLLVIFVL 109
             +FGD+   +    R  HQ    W++G          F LLLLL++ +L
Sbjct: 69  SLYFGDVKPTNAHKKRGRHQ-RIKWRFGLGSFVVSLLVFALLLLLLLLML 117

[Close]

BLAST of Sed0001064 vs. ExPASy TrEMBL
Match: A0A7J0FLE1 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_13g0009320 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.8e-11
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 10  AFEKVRLGGRSRGASMSVSNGCEGELHNCY-INIYVNSNIQGVNNSTLNGSEVKMGSPGV 69
           +FE++ LGG++ GA+M+      GE   CY INIY+N+N+QGVNNS L GSEVKM  PGV
Sbjct: 9   SFERLNLGGKNVGAAMTKQCSSSGESLGCYNINIYINNNVQGVNNSVLVGSEVKMRDPGV 68

Query: 70  CFFFGDM--GSKSHPNNRLVHQIHNLWQWGFM-LLLLLVIFVLVLKIG 114
           CF    +  G  S   NR           GF+ +LL+LV+ ++VL  G
Sbjct: 69  CFSMRGVKFGKDSQETNRKRRNSSR----GFLGILLVLVVAIIVLAFG 112

[Close]

BLAST of Sed0001064 vs. ExPASy TrEMBL
Match: A0A4V3WKN2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_013709 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 10  AFEKVRLGGRSRGASMSVSNGCEGELHN-CYINIYVNSNIQGVNNSTLNGSEVKMGSPGV 69
           +FE+V L G++ GA+M    G  GE  N C INIY+N+NIQGVNNS L GSEVKMG PGV
Sbjct: 34  SFERVNLEGKNVGAAMINRRGTSGESPNCCNINIYINNNIQGVNNSVLVGSEVKMGDPGV 93

Query: 70  CFFFGDMG-SKSHPNNRLVHQIHNLWQWGFMLLLLLVIFVL 109
           C    D+   K+    +   +  NL  +G +LL+ + IF+L
Sbjct: 94  CLSLSDVKLGKAFLEPK--KKSSNLGFYGMLLLVAIAIFLL 132

[Close]

BLAST of Sed0001064 vs. TAIR 10
Match: AT2G20362.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 7.9e-05
Identity = 26/63 (41.27%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 14 VRLGGRSRGASMSVSNGCE-GELHNCYINIYVNSNIQGVNNSTLNGSEVKMGSPGVCFFF 73
          + L GR+ GA M      +      C INIYVNSN+Q    S L GS+VK+  PGV    
Sbjct: 17 INLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLHI 76

Query: 74 GDM 76
           D+
Sbjct: 77 DDV 79

The following BLAST results are available for this feature:

BLAST of Sed0001064 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46369.1	5.8e-26	62.60	hypothetical protein Csa_004893 [Cucumis sativus]	[more]
KAA0039894.1	9.3e-16	72.60	xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuw...	[more]
KAG6592845.1	3.7e-12	74.60	hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2719359.1	3.7e-12	50.88	hypothetical protein I3760_03G263100 [Carya illinoinensis] >KAG6724509.1 hypothe...	[more]
KAG6662850.1	1.8e-11	53.93	hypothetical protein CIPAW_03G271500 [Carya illinoinensis]	[more]

BLAST of Sed0001064 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0001064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5	2.8e-26	62.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1	[more]
A0A5A7T8V9	4.5e-16	72.60	Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. mak...	[more]
A0A059A2V7	5.7e-11	43.64	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01423 PE=4 SV...	[more]
A0A7J0FLE1	9.8e-11	45.37	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_13g0009320 PE=4 SV=1	[more]
A0A4V3WKN2	1.3e-10	47.52	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0137...	[more]

BLAST of Sed0001064 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20362.1	7.9e-05	41.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 3..81
None	No IPR available	PANTHER	PTHR33472:SF9	OXIDOREDUCTASES, ACTING ON NADH OR NADPH-RELATED	coord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001064.1	Sed0001064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016757	glycosyltransferase activity