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Sed0001005 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGATTCGAAACGAAAAAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTACGGAGTTATAGATGTGCAACGGGTTGAGGCTATGGTAGTTCTAGAGGGTTTATTGATGGCAGAGGCGATGGGCTTTCAGCGTTTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCTCCTACAACGGACAACGAAATGCATCACTGAATTGAACAAAATCGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTTGTGTCGTTCCATTGGTGTGGTCGAAAGATGAAAAATTTGGCACATGCTCTAGCAAAATTGGCAATTCCCATGGATGAAGAAGCAATTTGGGTGGAGGAAGTCCTGATGGCCATGGAAGAGCTTTACAATCGAGAGAAGATTGAGTTTCTTAGTGATCCTGCAAGTGTTTCTATTCAACACCATTTTTGTAATTCATGCTTTGTTTAA ATGGTGATTCGAAACGAAAAAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTACGGAGTTATAGATGTGCAACGGGTTGAGGCTATGGTAGTTCTAGAGGGTTTATTGATGGCAGAGGCGATGGGCTTTCAGCGTTTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCTCCTACAACGGACAACGAAATGCATCACTGAATTGAACAAAATCGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTTGTGTCGTTCCATTGGTGTGGTCGAAAGATGAAAAATTTGGCACATGCTCTAGCAAAATTGGCAATTCCCATGGATGAAGAAGCAATTTGGGTGGAGGAAGTCCTGATGGCCATGGAAGAGCTTTACAATCGAGAGAAGATTGAGTTTCTTAGTGATCCTGCAAGTGTTTCTATTCAACACCATTTTTGTAATTCATGCTTTGTTTAA ATGGTGATTCGAAACGAAAAAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTACGGAGTTATAGATGTGCAACGGGTTGAGGCTATGGTAGTTCTAGAGGGTTTATTGATGGCAGAGGCGATGGGCTTTCAGCGTTTTGAGGTCGAGTTGGATTCGACTTCAATTGTGAATCTCCTACAACGGACAACGAAATGCATCACTGAATTGAACAAAATCGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTTGTGTCGTTCCATTGGTGTGGTCGAAAGATGAAAAATTTGGCACATGCTCTAGCAAAATTGGCAATTCCCATGGATGAAGAAGCAATTTGGGTGGAGGAAGTCCTGATGGCCATGGAAGAGCTTTACAATCGAGAGAAGATTGAGTTTCTTAGTGATCCTGCAAGTGTTTCTATTCAACACCATTTTTGTAATTCATGCTTTGTTTAA MVIRNEKGEAMISMAKPVYGVIDVQRVEAMVVLEGLLMAEAMGFQRFEVELDSTSIVNLLQRTTKCITELNKIVKEIWKIASRLTFVSFHWCGRKMKNLAHALAKLAIPMDEEAIWVEEVLMAMEELYNREKIEFLSDPASVSIQHHFCNSCFV Homology
BLAST of Sed0001005 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]) HSP 1 Score: 68.9 bits (167), Expect = 4.2e-08 Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 0
BLAST of Sed0001005 vs. NCBI nr
Match: XP_030942039.1 (uncharacterized protein LOC115967096 [Quercus lobata]) HSP 1 Score: 68.6 bits (166), Expect = 5.5e-08 Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 0
BLAST of Sed0001005 vs. NCBI nr
Match: KAG8473535.1 (hypothetical protein CXB51_035829 [Gossypium anomalum]) HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08 Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 0
BLAST of Sed0001005 vs. NCBI nr
Match: KAF7819670.1 (uncharacterized protein G2W53_025125 [Senna tora]) HSP 1 Score: 67.8 bits (164), Expect = 9.4e-08 Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 0
BLAST of Sed0001005 vs. NCBI nr
Match: XP_030958792.1 (uncharacterized protein LOC115980708 [Quercus lobata]) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07 Identity = 37/118 (31.36%), Postives = 66/118 (55.93%), Query Frame = 0
BLAST of Sed0001005 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 0
BLAST of Sed0001005 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07 Identity = 40/136 (29.41%), Postives = 75/136 (55.15%), Query Frame = 0
BLAST of Sed0001005 vs. ExPASy TrEMBL
Match: A0A7J8WZ51 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_011873 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07 Identity = 40/131 (30.53%), Postives = 65/131 (49.62%), Query Frame = 0
BLAST of Sed0001005 vs. ExPASy TrEMBL
Match: A0A6P4PAK8 (uncharacterized protein LOC108481412 OS=Gossypium arboreum OX=29729 GN=LOC108481412 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07 Identity = 37/132 (28.03%), Postives = 68/132 (51.52%), Query Frame = 0
BLAST of Sed0001005 vs. ExPASy TrEMBL
Match: A0A5B6V4L7 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07 Identity = 39/132 (29.55%), Postives = 70/132 (53.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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