Sed0000714 (gene) Chayote v1

Overview


Name	Sed0000714
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Location	LG02: 50783460 .. 50785617 (-)
RNA-Seq Expression	Sed0000714
Synteny	Sed0000714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATAAAAGAAAAAAGAACAATCCCCTAAACCTCTTCCCCTCTCTCTCTCTCTCTCCCTTTAACCGCCGCCGATCTTCCGCCGCCGCCCGCCACCGTCGCCTTCTGGTACGGTACTAAATTTTTCCAGAATTTTTTACTTTCCAGCATGGCTGATAAACCTCAAATCGATGGAATCGAGCCGATCGTTTCGGTTGAGAATCGGTTTTGATTTTGGTTTTGATTTTGATTTGACATTTGTTCGAGTTCCATTCTTTGATGATCGAGATCATTGGTTCGATTCCCTATTCATGAAAAACATAGGAAATCGAACCGTGGTCTTTCCGGTTTTTCTTTTTCTTCGTATTCTTGGAAATTTTTGTGGATGTCAGTAGCGTTTGAAGGATTCTGTTGCTTGATAACTATTTGATTTGTTGCTTTGTTGTATGATTATATTACAAAATTTAGTTATTTGAGGGTTTTAGAACTAGTTTCTGTATTTGATCAATTCGAACAGAGGACTAACTTTATAGACTATAGAACTAAATTTTAACTATCTTTTAAGACTATATGGATCGATTTTGAAATTTAACATTAACTTTTTTAAACTAAAAGAAGGTAGGCCTTAAAAACTGGTTTTTTTAAATTGTTTGGAAGAAAAGAAATTACAAGTACAAACTTAAACTCTACCCCATTTGATAATCATTTGATTAGCTTTTTTTTTTTTTTTTTTTTAAAAAACTTAAACTTGTTTTCACTCAAACCTCATCTTCATTTAAGTGAGTATTTCAATCCTAACCAAATTTCCAAAATTTGAACTCAAACAAAAGTTTTTTGGAAGCTACTTTTTTAGTTTTGGTTTAAAAAATATAGGTAAAGTGTATATGTGAAAGCAAGGAAAATCTCAGGCTGTAGTAGTTGTTGACTTGTAGACTTAATTTTCATTTTTTTTGTTTGTTGTTTGTTGTTTTTTGTTTTTTTAGGGATAAGAAACAATAAGACTGAGCCATTTGCGTATATGAATGTGTGATGTCTCTAAATGTGAATAAAAATGTTATGGGTTCAATCCATAATAGTTACCTACTTAGAAATTAATTTTCTATAAAAATTTTTACCATACAAAAATGTTTTAGTGTTAGGTGGATTGTCCTGTATGAATAGTCGACATGGAAAGTTATCTGAAGAGGGAAATCAATTTTATTTTAACATTATCTGGTGAAGTGATTATCTTCTGTTGTATAAATCATTTGATGCAGCAGAAAAATGAGCAGACAAGCCTCTTCATCATTAAAAAGAAGAAGGGCAGAAGGAGGAGGAGGAGGAGCTCTACTTGATCAAGAAAAAAAGCTCCATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTACCACATTCGACATGAAAAGAGAAACCAACATTGCTGATAGTGTAGTAACTAAAGCACTCAAGTCCCTTCAACTCAAAGGCCTGATCAAAGTGGTTCAACACTACCAGAACAAGTCGAGGAAATTCTACATGTCGAAGGACTTCGAACCGTCGAAAGAACTAACCGGAGGGGACTGGTACCAGGACGGGAATCTCGACACCGAGTATATCAACACTCTCAAGGGGGTGTGTGTGAGAATGATACAGAGGAGCAAGATTATCGCCATTGATGGAATTGTGGAGGCTTTCAAGAAGAGTGGGGCTACTAAAGTGGAGCTGTCTAATGGGCAAATTCAAGAGATTGTAAATGCTTTGGTGTTGGACCATGAAGTAATGGAAATAAAGAGCAATGGAACTGCAGAATTTAATTTTTCGCCAGTTGGGATGATTTTTTATAAGTTTTGTCCTAAAAGAGGGGCTAAAGGTGAACCCATAATAGGCGCAATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTACTGATTGTGCACCAACTGGCAGCATTTCGCCCCTCACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAATTTATATTTTTTTACACAATACTTGGATATTATTATTATTATTTATTTTTTTGTCGTTCCATAAATATTTGAACATTTGGTTTTTTTTTAAAAAACACTTGAGGTGGGAATTTGAACTCCTAATCTCTCCTTTGTTAGATTATACACCATGCTACTGGATTTTTTTGGTTTCCTCAGTTCTAGTCTATCACATGCACCGGAG

mRNA sequence

GAAAATAAAAGAAAAAAGAACAATCCCCTAAACCTCTTCCCCTCTCTCTCTCTCTCTCCCTTTAACCGCCGCCGATCTTCCGCCGCCGCCCGCCACCGTCGCCTTCTGCAGAAAAATGAGCAGACAAGCCTCTTCATCATTAAAAAGAAGAAGGGCAGAAGGAGGAGGAGGAGGAGCTCTACTTGATCAAGAAAAAAAGCTCCATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTACCACATTCGACATGAAAAGAGAAACCAACATTGCTGATAGTGTAGTAACTAAAGCACTCAAGTCCCTTCAACTCAAAGGCCTGATCAAAGTGGTTCAACACTACCAGAACAAGTCGAGGAAATTCTACATGTCGAAGGACTTCGAACCGTCGAAAGAACTAACCGGAGGGGACTGGTACCAGGACGGGAATCTCGACACCGAGTATATCAACACTCTCAAGGGGGTGTGTGTGAGAATGATACAGAGGAGCAAGATTATCGCCATTGATGGAATTGTGGAGGCTTTCAAGAAGAGTGGGGCTACTAAAGTGGAGCTGTCTAATGGGCAAATTCAAGAGATTGTAAATGCTTTGGTGTTGGACCATGAAGTAATGGAAATAAAGAGCAATGGAACTGCAGAATTTAATTTTTCGCCAGTTGGGATGATTTTTTATAAGTTTTGTCCTAAAAGAGGGGCTAAAGGTGAACCCATAATAGGCGCAATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTACTGATTGTGCACCAACTGGCAGCATTTCGCCCCTCACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAATTTATATTTTTTTACACAATACTTGGATATTATTATTATTATTTATTTTTTTGTCGTTCCATAAATATTTGAACATTTGGTTTTTTTTTAAAAAACACTTGAGGTGGGAATTTGAACTCCTAATCTCTCCTTTGTTAGATTATACACCATGCTACTGGATTTTTTTGGTTTCCTCAGTTCTAGTCTATCACATGCACCGGAG

Coding sequence (CDS)

ATGAGCAGACAAGCCTCTTCATCATTAAAAAGAAGAAGGGCAGAAGGAGGAGGAGGAGGAGCTCTACTTGATCAAGAAAAAAAGCTCCATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTACCACATTCGACATGAAAAGAGAAACCAACATTGCTGATAGTGTAGTAACTAAAGCACTCAAGTCCCTTCAACTCAAAGGCCTGATCAAAGTGGTTCAACACTACCAGAACAAGTCGAGGAAATTCTACATGTCGAAGGACTTCGAACCGTCGAAAGAACTAACCGGAGGGGACTGGTACCAGGACGGGAATCTCGACACCGAGTATATCAACACTCTCAAGGGGGTGTGTGTGAGAATGATACAGAGGAGCAAGATTATCGCCATTGATGGAATTGTGGAGGCTTTCAAGAAGAGTGGGGCTACTAAAGTGGAGCTGTCTAATGGGCAAATTCAAGAGATTGTAAATGCTTTGGTGTTGGACCATGAAGTAATGGAAATAAAGAGCAATGGAACTGCAGAATTTAATTTTTCGCCAGTTGGGATGATTTTTTATAAGTTTTGTCCTAAAAGAGGGGCTAAAGGTGAACCCATAATAGGCGCAATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTACTGATTGTGCACCAACTGGCAGCATTTCGCCCCTCACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAA

Protein sequence

MSRQASSSLKRRRAEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF

Homology

[Close]

BLAST of Sed0000714 vs. NCBI nr
Match: TYK19400.1 (DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 2.3e-90
Identity = 171/239 (71.55%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 9   QGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 68

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 69  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 128

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 129 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 188

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 189 PIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 247

[Close]

BLAST of Sed0000714 vs. NCBI nr
Match: XP_008448982.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_008448983.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 2.3e-90
Identity = 171/239 (71.55%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 5   QGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 64

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 65  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 124

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 125 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 184

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 185 PIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of Sed0000714 vs. NCBI nr
Match: XP_004148278.1 (DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypothetical protein Csa_010347 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 2.0e-89
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           +  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 5   EGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 64

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 65  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 124

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 125 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 184

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 185 PIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of Sed0000714 vs. NCBI nr
Match: TYK13079.1 (DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 5.8e-89
Identity = 166/238 (69.75%), Postives = 193/238 (81.09%), Query Frame = 0


Query: 4   QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 121 QGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 180

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 181 SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 240

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F 
Sbjct: 241 RMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFI 300

Query: 184 PVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 301 PIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 358

[Close]

BLAST of Sed0000714 vs. NCBI nr
Match: XP_008439941.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 5.8e-89
Identity = 166/238 (69.75%), Postives = 193/238 (81.09%), Query Frame = 0


Query: 4   QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 5   QGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 64

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 65  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 124

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F 
Sbjct: 125 RMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFI 184

Query: 184 PVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 185 PIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 242

[Close]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-22
Identity = 72/234 (30.77%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 24  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKF 83
           +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K 
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 84  YMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR----------------MIQRSKI 143
           YM  + +P + +TGG WY D + ++E++  L   C +                MIQR+  
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSS 209

Query: 144 IAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIF 203
            A    V +   + G +KVELS   I+ I+N L+ D +V M I +            M  
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 204 YKFCPKRGAKGEPII--GAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           Y+          PII    +   PCG+CP   DC   G ISP  C+Y T+WL+F
Sbjct: 270 YRAV-------SPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-22
Identity = 72/234 (30.77%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 24  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKF 83
           +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K 
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 84  YMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVR----------------MIQRSKI 143
           YM  + +P + +TGG WY D + ++E++  L   C +                MIQR+  
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSS 209

Query: 144 IAIDGIV-EAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIF 203
            A    V +   + G +KVELS   I+ I+N L+ D +V M I +            M  
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 204 YKFCPKRGAKGEPII--GAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           Y+          PII    +   PCG+CP   DC   G ISP  C+Y T+WL+F
Sbjct: 270 YRAV-------NPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21
Identity = 67/234 (28.63%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 24  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKF 83
           +QEK ++ +I    + GI + D++ ++N+  + + K LK+L+ K LIK V+      +K 
Sbjct: 90  NQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 149

Query: 84  YMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ-----------------RSK 143
           YM  + +P + +TGG WY D + ++E++  L   C + +Q                  S 
Sbjct: 150 YMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSS 209

Query: 144 IIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEV-MEIKSNGTAEFNFSPVGMIF 203
             +   + +   + G +KVELS   I+ I+N L+ D +V M I +            M  
Sbjct: 210 FASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKL 269

Query: 204 YKFCPKRGAKGEPII--GAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           Y+          PI+    +   PCG+CP   DC   G ISP  C+Y T+WL+F
Sbjct: 270 YRAV-------NPILPPTGVVRAPCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 61/231 (26.41%), Postives = 108/231 (46.75%), Query Frame = 0


Query: 24  DQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKF 83
           ++EK ++ ++    + GI   D++ ++N+    + K LK+L+ K LIK V+      +K 
Sbjct: 78  NEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKV 137

Query: 84  YMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQRSKIIA-------------- 143
           YM  + EP   +TGG WYQD + + E+++ L   C+R +Q  +  A              
Sbjct: 138 YMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMS 197

Query: 144 ---IDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFY 203
              ++ + +     G +KV L+   ++ I+  +V D         G AE      G   Y
Sbjct: 198 CCTVNEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAERVRQQDGSFVY 257

Query: 204 KFCPKRGAKGEPI-IGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLD 237
           +      A   P+    +  +PCG+CP I +C+  G ++ +TC Y   WLD
Sbjct: 258 R------AVNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 57/210 (27.14%), Postives = 102/210 (48.57%), Query Frame = 0


Query: 29  LHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQLKGLIKVVQHYQNKSRKFYMSKD 88
           ++ LI +  + G  T ++K  +      +TK LK+L+ + LIK V+  Q+  +K YM  +
Sbjct: 82  IYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESRKLIKSVKSIQSGRKKVYMLYN 141

Query: 89  FEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQRSKIIAIDGIVEAFKK--SGATKVE 148
            EPS+E+TGG  Y D + D +YI  +K      +     + +  I+   +K    AT   
Sbjct: 142 MEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFVDNKGAVDLADIITYLRKVAEEATSQS 201

Query: 149 LSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMIFYKFCPKRGAKGEPIIGAMASI 208
           L    IQ +VN ++ D ++ E++            G+++      +  K    +    ++
Sbjct: 202 LGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSGILY------KPTKTPIPVNNFCNM 261

Query: 209 PCGVCPRITDCAPTGSISPLTCVYYTKWLD 237
           PCG CP    C+  G +SP  CVY+ ++L+
Sbjct: 262 PCGNCPVFDICSDNGLVSPKRCVYFKQYLE 285

[Close]

BLAST of Sed0000714 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.1e-90
Identity = 171/239 (71.55%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 5   QGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 64

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 65  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 124

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 125 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 184

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 185 PIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of Sed0000714 vs. ExPASy TrEMBL
Match: A0A5D3D7H7 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00330 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.1e-90
Identity = 171/239 (71.55%), Postives = 197/239 (82.43%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 9   QGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 68

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 69  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 128

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 129 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 188

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP IGAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 189 PIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 247

[Close]

BLAST of Sed0000714 vs. ExPASy TrEMBL
Match: A0A0A0L5W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 9.6e-90
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 0


Query: 4   QASSSLKRRRAEGG----GGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           +  SSLKR+R + G     GGAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 5   EGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 64

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 65  SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 124

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVELS  QI+EIVNALVLD++VME+KS+G  EF F 
Sbjct: 125 RMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI 184

Query: 184 PVGMIFYKFCPKRGA-KGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G  KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 185 PIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243

[Close]

BLAST of Sed0000714 vs. ExPASy TrEMBL
Match: A0A5D3CS47 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006860 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.8e-89
Identity = 166/238 (69.75%), Postives = 193/238 (81.09%), Query Frame = 0


Query: 4   QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 121 QGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 180

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 181 SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 240

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F 
Sbjct: 241 RMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFI 300

Query: 184 PVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 301 PIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 358

[Close]

BLAST of Sed0000714 vs. ExPASy TrEMBL
Match: A0A5A7UBI4 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003590 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.8e-89
Identity = 166/238 (69.75%), Postives = 193/238 (81.09%), Query Frame = 0


Query: 4   QASSSLKRRR----AEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTK 63
           Q  SSLKR+R     +    GAL+ QEK L+DLICSKQSMGI TFDMKRET  A+SVVTK
Sbjct: 121 QGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTK 180

Query: 64  ALKSLQLKGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCV 123
           +LKSLQ KGLIK+VQHYQNK +KFY+S DFEP+KELTGG+WY+DG LD +YINTLK VC 
Sbjct: 181 SLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCA 240

Query: 124 RMIQRSKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFS 183
           RMIQR K++ I+GIVE+FK+SGA KVEL+  QI+EIVNALVLD++V E+KS+G  EF F 
Sbjct: 241 RMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFI 300

Query: 184 PVGMIFYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
           P+G I YK+C + G KGEP  GAMASIPCGVCPRIT C P G ISP TCVYYTKWLDF
Sbjct: 301 PIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWLDF 358

[Close]

BLAST of Sed0000714 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-49
Identity = 104/233 (44.64%), Postives = 141/233 (60.52%), Query Frame = 0


Query: 7   SSLKRRRAEGGGGGALLDQEKKLHDLICSKQSMGITTFDMKRETNIADSVVTKALKSLQL 66
           S  KR   +  GG      EKKL DLI   Q  G T F++KRE  I  ++VT+ + SL+ 
Sbjct: 2   SKRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRK 61

Query: 67  KGLIKVVQHYQNKSRKFYMSKDFEPSKELTGGDWYQDGNLDTEYINTLKGVCVRMIQ--R 126
           K LIK V +  NK  K Y++ +FEP  ELTGG+WY DG LD   I  LK  CV +++  R
Sbjct: 62  KNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHR 121

Query: 127 SKIIAIDGIVEAFKKSGATKVELSNGQIQEIVNALVLDHEVMEIKSNGTAEFNFSPVGMI 186
            +++ ++ +   F K    + +LS  Q +EI+  L+LD+ +ME+KSNG  EF  + +G +
Sbjct: 122 QRVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEV 181

Query: 187 FYKFCPKRGAKGEPIIGAMASIPCGVCPRITDCAPTGSISPLTCVYYTKWLDF 238
            Y+   K+   GEP  GA ASIPCGVCP I  C+P G ISP TCVY+ KWLDF
Sbjct: 182 CYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

The following BLAST results are available for this feature:

BLAST of Sed0000714 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19400.1	2.3e-90	71.55	DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]	[more]
XP_008448982.1	2.3e-90	71.55	PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_...	[more]
XP_004148278.1	2.0e-89	70.71	DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypot...	[more]
TYK13079.1	5.8e-89	69.75	DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]	[more]
XP_008439941.1	5.8e-89	69.75	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]	[more]

BLAST of Sed0000714 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2T9S3	4.8e-22	30.77	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
Q9H1D9	4.8e-22	30.77	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
Q921X6	1.8e-21	28.63	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
Q9VD25	1.0e-19	26.41	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]
Q86JM3	1.7e-19	27.14	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Sed0000714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BL06	1.1e-90	71.55	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3D7H7	1.1e-90	71.55	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0L5W6	9.6e-90	70.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1	[more]
A0A5D3CS47	2.8e-89	69.75	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7UBI4	2.8e-89	69.75	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]

BLAST of Sed0000714 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23710.1	1.6e-49	44.64	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 237..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 132..236 e-value: 2.5E-12 score: 46.8 coord: 30..126 e-value: 1.5E-25 score: 90.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 24..87 e-value: 3.3E-15 score: 57.8
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 21..237
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 24..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000714.1	Sed0000714.1	mRNA
Sed0000714.2	Sed0000714.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008168	methyltransferase activity