Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA
mRNA sequence
ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA
Coding sequence (CDS)
ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA
Protein sequence
MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPPPPEMKKVKKRVRFAETEPVVIAIDREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACELTRIPAARVSSSVVLS
Homology
BLAST of Sed0000706 vs. NCBI nr
Match:
XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])
HSP 1 Score: 171.8 bits (434), Expect = 4.0e-39
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP-----PPPEMKKVKK 60
MISN I +LNKKLQAV+IS+RCRR T VYRDDL+ +KQ PP P PE+KKVKK
Sbjct: 1 MISNFILSLNKKLQAVEISNRCRR-TKKTTYVYRDDLSKKKQSPPPSSSQPQPEIKKVKK 60
Query: 61 RVRFAETEPVVIAI-DREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDV 120
RVRFA+TEPV+IAI D+EE E+TE+KVVRI VKLT+EEANRMLSRCSDGG+LEFGDV
Sbjct: 61 RVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDV 120
Query: 121 ACELTRIPAARVSSSVV 131
ACEL RIPA RVSSS+V
Sbjct: 121 ACELMRIPATRVSSSMV 136
BLAST of Sed0000706 vs. NCBI nr
Match:
KAG6577140.1 (hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 167.9 bits (424), Expect = 5.7e-38
Identity = 95/136 (69.85%), Postives = 114/136 (83.82%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPPP---PEMKKVKKRV 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP PP PE++KVKKRV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPPQGKPEIEKVKKRV 60
Query: 61 RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
RFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEF DVA E
Sbjct: 61 RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASE 120
Query: 121 LTRIPAARVSSSVVLS 133
L RIPAARVSSS+V++
Sbjct: 121 LMRIPAARVSSSMVVN 135
BLAST of Sed0000706 vs. NCBI nr
Match:
XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])
HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 94/133 (70.68%), Postives = 111/133 (83.46%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP P PE++KVKKRV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60
Query: 61 RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
RFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA E
Sbjct: 61 RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASE 120
Query: 121 LTRIPAARVSSSV 130
L RIPAARVSSS+
Sbjct: 121 LMRIPAARVSSSM 132
BLAST of Sed0000706 vs. NCBI nr
Match:
XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])
HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 94/135 (69.63%), Postives = 111/135 (82.22%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP-----PPEMKKVKK 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP P PE++KVKK
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60
Query: 61 RVRFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVA 120
RVRFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA
Sbjct: 61 RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120
Query: 121 CELTRIPAARVSSSV 130
EL RIPAARVSSS+
Sbjct: 121 SELMRIPAARVSSSM 134
BLAST of Sed0000706 vs. NCBI nr
Match:
KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP P PE++KVKKRV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60
Query: 61 RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
RFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEF DVA E
Sbjct: 61 RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASE 120
Query: 121 LTRIPAARVSSSVVLS 133
L RIPAARVSSS+V++
Sbjct: 121 LMRIPAARVSSSMVVN 135
BLAST of Sed0000706 vs. ExPASy TrEMBL
Match:
A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 94/133 (70.68%), Postives = 111/133 (83.46%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP P PE++KVKKRV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60
Query: 61 RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
RFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA E
Sbjct: 61 RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASE 120
Query: 121 LTRIPAARVSSSV 130
L RIPAARVSSS+
Sbjct: 121 LMRIPAARVSSSM 132
BLAST of Sed0000706 vs. ExPASy TrEMBL
Match:
A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 94/135 (69.63%), Postives = 111/135 (82.22%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP-----PPEMKKVKK 60
MI N+IS+LNKKLQAV+IS+RCRR T VYR D++ +KQP P PE++KVKK
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60
Query: 61 RVRFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVA 120
RVRFA+TEPV+IAIDREE E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA
Sbjct: 61 RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120
Query: 121 CELTRIPAARVSSSV 130
EL RIPAARVSSS+
Sbjct: 121 SELMRIPAARVSSSM 134
BLAST of Sed0000706 vs. ExPASy TrEMBL
Match:
A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
MISN+IS+LNKKLQAV+IS+RC+R T VYRDDL +K PP P E+KK
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKR-TKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60
Query: 61 VKKRVRFAETEPVVIAI--DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEF 120
VKKRVRFA+TEPV+IAI DREE E+TE+KVVRI VKLT++EANRMLSRCS+ G+LEF
Sbjct: 61 VKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120
Query: 121 GDVACELTRIPAARVSSSVV 131
GDVA EL RIP RVSSS+V
Sbjct: 121 GDVASELLRIPPTRVSSSLV 138
BLAST of Sed0000706 vs. ExPASy TrEMBL
Match:
A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
MISN+IS+LNKKLQAV+IS+RC+R T VYRDDL +K PP P E+KK
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKR-TKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60
Query: 61 VKKRVRFAETEPVVIAI--DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEF 120
VKKRVRFA+TEPV+IAI DREE E+TE+KVVRI VKLT++EANRMLSRCS+ G+LEF
Sbjct: 61 VKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120
Query: 121 GDVACELTRIPAARVSSSVV 131
GDVA EL RIP RVSSS+V
Sbjct: 121 GDVASELLRIPPTRVSSSLV 138
BLAST of Sed0000706 vs. ExPASy TrEMBL
Match:
A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)
HSP 1 Score: 153.3 bits (386), Expect = 7.1e-34
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 1 MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
MISN+IS+LNKKLQAV+IS RC+R T A VYRD+L + PP P E+KK
Sbjct: 1 MISNLISSLNKKLQAVEISSRCKR-TKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60
Query: 61 VKKRVRFAETEPVVIAI--DREEGNAE-KTEEKVVRIRVKLTREEANRMLSRCSDGGILE 120
VKKRVRFA+TEPV+IAI DREE E +TE+KVVRI VKLT++EANRMLSRCS+GG+LE
Sbjct: 61 VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120
Query: 121 FGDVACELTRIPAARVSSSVV 131
FGDVA EL RIP RV SS+V
Sbjct: 121 FGDVASELMRIPPTRVRSSLV 140
BLAST of Sed0000706 vs. TAIR 10
Match:
AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )
HSP 1 Score: 41.2 bits (95), Expect = 7.6e-04
Identity = 16/62 (25.81%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 70 DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACELTRIPAARVSSSV 129
++E + +E+VVR+++K+T+ EA R+LS+C + +L+ + ++ +P ++ ++
Sbjct: 120 EKESLKMVEGKEEVVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAM 179
Query: 130 VL 132
V+
Sbjct: 180 VM 181
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906331.1 | 4.0e-39 | 72.26 | uncharacterized protein LOC120092170 [Benincasa hispida] | [more] |
KAG6577140.1 | 5.7e-38 | 69.85 | hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022931429.1 | 2.2e-37 | 70.68 | uncharacterized protein LOC111437608 [Cucurbita moschata] | [more] |
XP_022985430.1 | 2.9e-37 | 69.63 | uncharacterized protein LOC111483436 [Cucurbita maxima] | [more] |
KAG7015140.1 | 4.9e-37 | 69.12 | hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EU86 | 1.1e-37 | 70.68 | uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... | [more] |
A0A6J1JBA8 | 1.4e-37 | 69.63 | uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... | [more] |
A0A5D3D246 | 8.4e-35 | 66.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3BS40 | 8.4e-35 | 66.43 | uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... | [more] |
A0A0A0KYE1 | 7.1e-34 | 65.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G23880.1 | 7.6e-04 | 25.81 | unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac... | [more] |