Sed0000706 (gene) Chayote v1

Overview
NameSed0000706
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG07: 12159286 .. 12159684 (+)
RNA-Seq ExpressionSed0000706
SyntenySed0000706
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA

mRNA sequence

ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA

Coding sequence (CDS)

ATGATCAGCAACATGATTTCAAACTTGAACAAAAAATTGCAAGCAGTTAAAATCAGCCATCGCTGCAGACGATCGACGAACGCGGCGGCGTGCGTATACAGAGACGATCTGAACAACAGGAAGCAACCGCCGCCGCCGCCGCCGGAGATGAAGAAAGTGAAGAAGAGAGTGAGATTCGCCGAAACAGAGCCGGTGGTCATCGCCATTGACAGAGAGGAAGGAAATGCAGAGAAAACAGAGGAAAAAGTTGTGAGAATTAGGGTGAAACTGACCAGAGAAGAAGCGAATCGGATGCTTTCGAGATGCTCCGATGGCGGAATTTTGGAGTTCGGAGATGTGGCTTGTGAGCTCACCCGAATTCCGGCTGCTCGAGTTAGTTCTTCCGTGGTGCTCAGTTGA

Protein sequence

MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPPPPEMKKVKKRVRFAETEPVVIAIDREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACELTRIPAARVSSSVVLS
Homology
BLAST of Sed0000706 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 4.0e-39
Identity = 99/137 (72.26%), Postives = 113/137 (82.48%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP-----PPPEMKKVKK 60
           MISN I +LNKKLQAV+IS+RCRR T     VYRDDL+ +KQ PP     P PE+KKVKK
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRR-TKKTTYVYRDDLSKKKQSPPPSSSQPQPEIKKVKK 60

Query: 61  RVRFAETEPVVIAI-DREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDV 120
           RVRFA+TEPV+IAI D+EE    E+TE+KVVRI VKLT+EEANRMLSRCSDGG+LEFGDV
Sbjct: 61  RVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELTRIPAARVSSSVV 131
           ACEL RIPA RVSSS+V
Sbjct: 121 ACELMRIPATRVSSSMV 136

BLAST of Sed0000706 vs. NCBI nr
Match: KAG6577140.1 (hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-38
Identity = 95/136 (69.85%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPPP---PEMKKVKKRV 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  PP   PE++KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPPQGKPEIEKVKKRV 60

Query: 61  RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
           RFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEF DVA E
Sbjct: 61  RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASE 120

Query: 121 LTRIPAARVSSSVVLS 133
           L RIPAARVSSS+V++
Sbjct: 121 LMRIPAARVSSSMVVN 135

BLAST of Sed0000706 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 94/133 (70.68%), Postives = 111/133 (83.46%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  P    PE++KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
           RFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA E
Sbjct: 61  RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASE 120

Query: 121 LTRIPAARVSSSV 130
           L RIPAARVSSS+
Sbjct: 121 LMRIPAARVSSSM 132

BLAST of Sed0000706 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 94/135 (69.63%), Postives = 111/135 (82.22%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP-----PPEMKKVKK 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  P      PE++KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVA 120
           RVRFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELTRIPAARVSSSV 130
            EL RIPAARVSSS+
Sbjct: 121 SELMRIPAARVSSSM 134

BLAST of Sed0000706 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  P    PE++KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
           RFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEF DVA E
Sbjct: 61  RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVASE 120

Query: 121 LTRIPAARVSSSVVLS 133
           L RIPAARVSSS+V++
Sbjct: 121 LMRIPAARVSSSMVVN 135

BLAST of Sed0000706 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 94/133 (70.68%), Postives = 111/133 (83.46%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP---PPEMKKVKKRV 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  P    PE++KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACE 120
           RFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA E
Sbjct: 61  RFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASE 120

Query: 121 LTRIPAARVSSSV 130
           L RIPAARVSSS+
Sbjct: 121 LMRIPAARVSSSM 132

BLAST of Sed0000706 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 94/135 (69.63%), Postives = 111/135 (82.22%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPPP-----PPEMKKVKK 60
           MI N+IS+LNKKLQAV+IS+RCRR T     VYR D++ +KQP  P      PE++KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRR-TKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFAETEPVVIAIDREE-GNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVA 120
           RVRFA+TEPV+IAIDREE    E+TE+KVVRI VKLT++EANRMLSRCSDGG+LEFGDVA
Sbjct: 61  RVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELTRIPAARVSSSV 130
            EL RIPAARVSSS+
Sbjct: 121 SELMRIPAARVSSSM 134

BLAST of Sed0000706 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
           MISN+IS+LNKKLQAV+IS+RC+R T     VYRDDL  +K  PP         P E+KK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKR-TKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVVIAI--DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEF 120
           VKKRVRFA+TEPV+IAI  DREE   E+TE+KVVRI VKLT++EANRMLSRCS+ G+LEF
Sbjct: 61  VKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVACELTRIPAARVSSSVV 131
           GDVA EL RIP  RVSSS+V
Sbjct: 121 GDVASELLRIPPTRVSSSLV 138

BLAST of Sed0000706 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
           MISN+IS+LNKKLQAV+IS+RC+R T     VYRDDL  +K  PP         P E+KK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKR-TKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFAETEPVVIAI--DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEF 120
           VKKRVRFA+TEPV+IAI  DREE   E+TE+KVVRI VKLT++EANRMLSRCS+ G+LEF
Sbjct: 61  VKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVACELTRIPAARVSSSVV 131
           GDVA EL RIP  RVSSS+V
Sbjct: 121 GDVASELLRIPPTRVSSSLV 138

BLAST of Sed0000706 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.1e-34
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 1   MISNMISNLNKKLQAVKISHRCRRSTNAAACVYRDDLNNRKQPPP--------PPPEMKK 60
           MISN+IS+LNKKLQAV+IS RC+R T   A VYRD+L  +   PP         P E+KK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKR-TKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFAETEPVVIAI--DREEGNAE-KTEEKVVRIRVKLTREEANRMLSRCSDGGILE 120
           VKKRVRFA+TEPV+IAI  DREE   E +TE+KVVRI VKLT++EANRMLSRCS+GG+LE
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 FGDVACELTRIPAARVSSSVV 131
           FGDVA EL RIP  RV SS+V
Sbjct: 121 FGDVASELMRIPPTRVRSSLV 140

BLAST of Sed0000706 vs. TAIR 10
Match: AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.6e-04
Identity = 16/62 (25.81%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 70  DREEGNAEKTEEKVVRIRVKLTREEANRMLSRCSDGGILEFGDVACELTRIPAARVSSSV 129
           ++E     + +E+VVR+++K+T+ EA R+LS+C +  +L+   +  ++  +P  ++  ++
Sbjct: 120 EKESLKMVEGKEEVVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAM 179

Query: 130 VL 132
           V+
Sbjct: 180 VM 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906331.14.0e-3972.26uncharacterized protein LOC120092170 [Benincasa hispida][more]
KAG6577140.15.7e-3869.85hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931429.12.2e-3770.68uncharacterized protein LOC111437608 [Cucurbita moschata][more]
XP_022985430.12.9e-3769.63uncharacterized protein LOC111483436 [Cucurbita maxima][more]
KAG7015140.14.9e-3769.12hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EU861.1e-3770.68uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... [more]
A0A6J1JBA81.4e-3769.63uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... [more]
A0A5D3D2468.4e-3566.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BS408.4e-3566.43uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... [more]
A0A0A0KYE17.1e-3465.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23880.17.6e-0425.81unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..56
NoneNo IPR availablePANTHERPTHR36782BNAC03G62080D PROTEINcoord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000706.1Sed0000706.1mRNA