Sed0000563 (gene) Chayote v1

Overview


Name	Sed0000563
Type	gene
Organism	Sechium edule (Chayote v1)
Description	B box-type domain-containing protein
Location	LG04: 41201092 .. 41203295 (-)
RNA-Seq Expression	Sed0000563
Synteny	Sed0000563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAACACTCACAGACACACTCGTAAAACATTTCTGTTCATCAAATAAAAAAATAAAATAAAATAATAATCCTACACATTTCCGTTTCCATTTTCACTTTAATCTTCTTTCTTCTTTGTTCTTCCTCCATTTTTCAGAGCTTAATCCGATTTATTCATAGCTTCCTCTGCGTTTTTGTACTGATTTCGATCTTTCTCTTCAGCCTGCAATCGCAAGAATCTGTAAGCATTTTAGTATTTTTCGGAGAATTTTTAAATCTCGAACTATTTTCGTTTGGTTATTTCAGTATTGATTTCACTTCTTAGTGTTGCTTGTGGAGATTTTACGGATGTGTTCTTTTTTGGTGTCTGTTTGGCTATTTTTGGAGTTTGAATCTCTCTACTTGTACGATTGATTGTTGTATTGTGAATTTCTGTTTGATTGAAAGGCTGTGAAGTTAATTAGCTCAACTCTGGATTTGTTTGCAGTTTTTTCCCACTAGTTGGATGAAATTTTGTGAAATAGGATTGGAATCTTAGATTTGTTTGGTTTTTTGTAGGTTACAATTATGCGATTCTTTTAGGATGGAATCGGATTGGCTCGGTACGCTTTTGAATTCGAAATTCTTCACTTCTTGCGATGTTCATCATAATCTCCGGAAAAATGAGAAAAATAAATTATGCGTTGATTGTAGTGTTAGCTTCTGCAAGAATTGTACAGTACATGATCTTCATCGACAGGTTCATATCTGGAAATATGTCTATCATGAAGTTGTGCGCGTTCAGGACATGGAGAAACACTTTTGCTGTTCAGAGATTCATGTATATTATATTCTGAATTCAATCTGTGTTTTGTTCATCATTTTGGTTTAATGTAGTGGAAAACTTGATATCATTGAGATTTGAGATGAGTTGTTTTGTTCTTTTGCCAATTCTAACTGATATTGTTTTACAAAAAAATTATTAGCCGAATTTATTTGGTCTTCAATTACTGTAAAAGAGGAAATCTCAAATCTCAGAAGTTTGATTTTGATCTTTACCATCTCGAATGAATGAATGAACCATATGATGATTTGTGTTGGTTTTAGGAATAAAGCTATTTTGTTATCAATTTCCTTGTTTTGTTTTCAACTTGTCTGTTGAAAACAATCAAACTGAACTTGTTGCACTGCTAACTTTGCCTTTCTCATATGGCATTTCATCTCCATGTTTTCTAACTTGATACTCCAATTGCTTAATTATGCAGACATATAAAGTCAATGGTGAAATATGTGTTCACCTAAAGTCCCGGGGGCAATCGGTCGACACGAAATCACCAAAGACGAAGTCGGGTGGTTCTTGTGAAGATTGTGGTAGATATGTGCAAGATCCTAATCGCTTCTGTTCAATTGCTTGCAAGGTATAGAAATACATGAACCATATCATAACTCTGTTGCTCTTACTCTTAAGAGCGCATAGAAAAAAAAAACTCCATATCCTAAGTAATTTTGTCACTCGGTACACCACACACAGATTGTTAACTATTCAAAATGCTGTGTAAAAAACATCAGGTTTCTGTGGACTCAAAGCTTAAGAACCAGTGCATAGGAATCATCCTTTCTTCGAGCCCGGATTTCGGTAACTTATCATTCAAGGAAAAAACCAGCCGAGAAACAAATGCAAGCGAATTGGAATCAACCATATCAATGGCAGAGTCCAGAGAAGATACCAAAGCTAGCCCTTCATCTTCACTACTTCGAAAACGTAGAAGAAAAGGAACCCCTCACAGATCTCCATTCATCTGATGAGATGCAACATTTTCATCTCCTTTTTTACTTCATTAATTCCTTGTGGCTCTCAATTGGTATGTGCTTCTAAAACTTTATTTACCATAACTAAAATTTATATAAAATGATCAATATAAAATCCAAGATTTTAGATAACAGCTTTTCAAATCTCTCTATTTGCATGGTTTTAAAATTTTCATTTTGCAGCTTTGACTAGGAAGATTAGTTGGTAGAGAAAGCTGACATAAGCAGACATTTTTGACCCATTTTGAAGAATTATTATTTATATGTCCATGTGATTGCATTTCCCATCTGAGAATAGTTAAATAGGATATTGTTCATCACTGCAATTAGCATGTGGGTGTGGGTCTTATTATTGATGAGAATGTTTGTGAATGTGTTTACATGAAAGTTTGCTTTCTCACTTTTTCTTTATCTTTTTCTCTTTTTGCTGTATGGC

mRNA sequence

GTGAACACTCACAGACACACTCGTAAAACATTTCTGTTCATCAAATAAAAAAATAAAATAAAATAATAATCCTACACATTTCCGTTTCCATTTTCACTTTAATCTTCTTTCTTCTTTGTTCTTCCTCCATTTTTCAGAGCTTAATCCGATTTATTCATAGCTTCCTCTGCGTTTTTGTACTGATTTCGATCTTTCTCTTCAGCCTGCAATCGCAAGAATCTGTTACAATTATGCGATTCTTTTAGGATGGAATCGGATTGGCTCGGTACGCTTTTGAATTCGAAATTCTTCACTTCTTGCGATGTTCATCATAATCTCCGGAAAAATGAGAAAAATAAATTATGCGTTGATTGTAGTGTTAGCTTCTGCAAGAATTGTACAGTACATGATCTTCATCGACAGGTTCATATCTGGAAATATGTCTATCATGAAGTTGTGCGCGTTCAGGACATGGAGAAACACTTTTGCTGTTCAGAGATTCATACATATAAAGTCAATGGTGAAATATGTGTTCACCTAAAGTCCCGGGGGCAATCGGTCGACACGAAATCACCAAAGACGAAGTCGGGTGGTTCTTGTGAAGATTGTGGTAGATATGTGCAAGATCCTAATCGCTTCTGTTCAATTGCTTGCAAGGTTTCTGTGGACTCAAAGCTTAAGAACCAGTGCATAGGAATCATCCTTTCTTCGAGCCCGGATTTCGGTAACTTATCATTCAAGGAAAAAACCAGCCGAGAAACAAATGCAAGCGAATTGGAATCAACCATATCAATGGCAGAGTCCAGAGAAGATACCAAAGCTAGCCCTTCATCTTCACTACTTCGAAAACGTAGAAGAAAAGGAACCCCTCACAGATCTCCATTCATCTGATGAGATGCAACATTTTCATCTCCTTTTTTACTTCATTAATTCCTTGTGGCTCTCAATTGGTATGTGCTTCTAAAACTTTATTTACCATAACTAAAATTTATATAAAATGATCAATATAAAATCCAAGATTTTAGATAACAGCTTTTCAAATCTCTCTATTTGCATGGTTTTAAAATTTTCATTTTGCAGCTTTGACTAGGAAGATTAGTTGGTAGAGAAAGCTGACATAAGCAGACATTTTTGACCCATTTTGAAGAATTATTATTTATATGTCCATGTGATTGCATTTCCCATCTGAGAATAGTTAAATAGGATATTGTTCATCACTGCAATTAGCATGTGGGTGTGGGTCTTATTATTGATGAGAATGTTTGTGAATGTGTTTACATGAAAGTTTGCTTTCTCACTTTTTCTTTATCTTTTTCTCTTTTTGCTGTATGGC

Coding sequence (CDS)

ATGGAATCGGATTGGCTCGGTACGCTTTTGAATTCGAAATTCTTCACTTCTTGCGATGTTCATCATAATCTCCGGAAAAATGAGAAAAATAAATTATGCGTTGATTGTAGTGTTAGCTTCTGCAAGAATTGTACAGTACATGATCTTCATCGACAGGTTCATATCTGGAAATATGTCTATCATGAAGTTGTGCGCGTTCAGGACATGGAGAAACACTTTTGCTGTTCAGAGATTCATACATATAAAGTCAATGGTGAAATATGTGTTCACCTAAAGTCCCGGGGGCAATCGGTCGACACGAAATCACCAAAGACGAAGTCGGGTGGTTCTTGTGAAGATTGTGGTAGATATGTGCAAGATCCTAATCGCTTCTGTTCAATTGCTTGCAAGGTTTCTGTGGACTCAAAGCTTAAGAACCAGTGCATAGGAATCATCCTTTCTTCGAGCCCGGATTTCGGTAACTTATCATTCAAGGAAAAAACCAGCCGAGAAACAAATGCAAGCGAATTGGAATCAACCATATCAATGGCAGAGTCCAGAGAAGATACCAAAGCTAGCCCTTCATCTTCACTACTTCGAAAACGTAGAAGAAAAGGAACCCCTCACAGATCTCCATTCATCTGA

Protein sequence

MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVYHEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQDPNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESREDTKASPSSSLLRKRRRKGTPHRSPFI

Homology

[Close]

BLAST of Sed0000563 vs. NCBI nr
Match: KAG6599925.1 (hypothetical protein SDJN03_05158, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 176/205 (85.85%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 44  METDWLGTLLNTKFFASCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 103

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 104 HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 163

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEKTS ETNASELESTIS+AESR
Sbjct: 164 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKTSAETNASELESTISIAESR 223

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 224 EETKASPSSSQPRKRRRKDTPHRSP 248

[Close]

BLAST of Sed0000563 vs. NCBI nr
Match: KAG7030608.1 (hypothetical protein SDJN02_04645 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 176/205 (85.85%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 52  METDWLGTLLNTKFFASCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 111

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 112 HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 171

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEKTS ETNASELESTIS+AESR
Sbjct: 172 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKTSAETNASELESTISIAESR 231

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 232 EETKASPSSSQPRKRRRKDTPHRSP 256

[Close]

BLAST of Sed0000563 vs. NCBI nr
Match: XP_022942707.1 (uncharacterized protein LOC111447662 [Cucurbita moschata])

HSP 1 Score: 356.7 bits (914), Expect = 1.4e-94
Identity = 176/205 (85.85%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 1   METDWLGTLLNTKFFASCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 61  HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEKTS ETNASELESTIS+AESR
Sbjct: 121 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKTSAETNASELESTISIAESR 180

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 181 EETKASPSSSQPRKRRRKDTPHRSP 205

[Close]

BLAST of Sed0000563 vs. NCBI nr
Match: XP_022996504.1 (uncharacterized protein LOC111491731 [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 5.2e-94
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 1   METDWLGTLLNTKFFVSCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 61  HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEK S ETNASELESTIS+AESR
Sbjct: 121 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKNSAETNASELESTISIAESR 180

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 181 EETKASPSSSQPRKRRRKDTPHRSP 205

[Close]

BLAST of Sed0000563 vs. NCBI nr
Match: XP_023548890.1 (uncharacterized protein LOC111807405 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93
Identity = 177/206 (85.92%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 1   METDWLGTLLNTKFFGSCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PKTKSGGSCEDCGRYVQ 
Sbjct: 61  HEVVRVQDAEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKTKSGGSCEDCGRYVQY 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEKTS ETNASELESTIS+AESR
Sbjct: 121 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKTSAETNASELESTISIAESR 180

Query: 181 EDTKASPSSSLL-RKRRRKGTPHRSP 206
           E+TKASPSSS   RKRRRK TPHRSP
Sbjct: 181 EETKASPSSSSQPRKRRRKDTPHRSP 206

[Close]

BLAST of Sed0000563 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.2e-22
Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 5   WLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCT-VHDLHRQVHIWKYVYHEV 64
           WL  L   KFF  C  H   +KNE+N  C+DC  S C +C   H  HR + + +YVYH+V
Sbjct: 8   WLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYHDV 67

Query: 65  VRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQDPNR 124
           VR++D++K   CS +  Y +N    V +K R Q+   K     +G  C  C R +Q+P  
Sbjct: 68  VRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKG----AGNYCTSCDRSLQEPYI 127

Query: 125 FCSIACKV 132
            CS+ CKV
Sbjct: 128 HCSLGCKV 131

[Close]

BLAST of Sed0000563 vs. ExPASy TrEMBL
Match: A0A6J1FR06 (uncharacterized protein LOC111447662 OS=Cucurbita moschata OX=3662 GN=LOC111447662 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.6e-95
Identity = 176/205 (85.85%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 1   METDWLGTLLNTKFFASCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 61  HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEKTS ETNASELESTIS+AESR
Sbjct: 121 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKTSAETNASELESTISIAESR 180

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 181 EETKASPSSSQPRKRRRKDTPHRSP 205

[Close]

BLAST of Sed0000563 vs. ExPASy TrEMBL
Match: A0A6J1K8W8 (uncharacterized protein LOC111491731 OS=Cucurbita maxima OX=3661 GN=LOC111491731 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DWLGTLLN+KFF SCD+H NLRKNEKNK C+DCSVSFCKNCTVHDLHRQVHIWKYVY
Sbjct: 1   METDWLGTLLNTKFFVSCDLHPNLRKNEKNKFCIDCSVSFCKNCTVHDLHRQVHIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           HEVVRVQD EK+F CSEIHTYKVNGEI VHL SRGQSVD K PK KSGGSCEDCGRYVQ 
Sbjct: 61  HEVVRVQDTEKYFRCSEIHTYKVNGEISVHLNSRGQSVDAKPPKAKSGGSCEDCGRYVQY 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESR 180
           PNRFCSIACKVSV+SKLK+Q I  I+S SPDFGNLSFKEK S ETNASELESTIS+AESR
Sbjct: 121 PNRFCSIACKVSVNSKLKDQSIRTIVSLSPDFGNLSFKEKNSAETNASELESTISIAESR 180

Query: 181 EDTKASPSSSLLRKRRRKGTPHRSP 206
           E+TKASPSSS  RKRRRK TPHRSP
Sbjct: 181 EETKASPSSSQPRKRRRKDTPHRSP 205

[Close]

BLAST of Sed0000563 vs. ExPASy TrEMBL
Match: A0A6J1D096 (uncharacterized protein LOC111015876 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015876 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.5e-88
Identity = 165/207 (79.71%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DW+GTLLN+KFFTSCD+H  LRKNEKNK C+DCS+SFCKNC VHDLHRQV+IWKYVY
Sbjct: 1   METDWIGTLLNTKFFTSCDLHPTLRKNEKNKFCIDCSISFCKNCRVHDLHRQVNIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
           H+VVRVQDMEK F CSEIHTYKVNGE+ VHL SR QSVDTKSPK KS GSCEDCGR+VQD
Sbjct: 61  HDVVRVQDMEKFFRCSEIHTYKVNGEVSVHLNSRRQSVDTKSPKAKSRGSCEDCGRHVQD 120

Query: 121 PNRFCSIACKVSVDS-KLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAES 180
           P RFCS+ACKVSV+S K+K Q IG I+S S DFGNLS+KE+TS ETNASELESTIS+AES
Sbjct: 121 PYRFCSVACKVSVNSVKVKGQSIGTIISPSLDFGNLSYKERTSPETNASELESTISIAES 180

Query: 181 REDTKASPSSSLLRKRRRKGTPHRSPF 207
            E+ KASPSSS  RKRRRKG PHRSPF
Sbjct: 181 IEEIKASPSSSRPRKRRRKGIPHRSPF 207

[Close]

BLAST of Sed0000563 vs. ExPASy TrEMBL
Match: A0A0A0KL89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G023890 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 145/207 (70.05%), Postives = 175/207 (84.54%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           MES+WLGTLLN+KF+TSCD+H NL +N+K++ C+DCSVSFCKNCT+HDLHRQV+IWKYVY
Sbjct: 1   MESNWLGTLLNTKFYTSCDLHPNLWRNKKSRFCIDCSVSFCKNCTIHDLHRQVNIWKYVY 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
            EVVRVQDMEK+FCCSEIH YKVNG++ VH+ S GQSVDTKSPK KS   CE+CG+++ D
Sbjct: 61  REVVRVQDMEKYFCCSEIHPYKVNGKLAVHINSCGQSVDTKSPKRKSSNPCEECGKHIHD 120

Query: 121 PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKE-KTSRETNASELESTISMAES 180
           P+RFCSIACKV V+SK+K+  +G ++S S D GNLSFK+ K S ETNASELESTIS+AES
Sbjct: 121 PHRFCSIACKVCVNSKIKDHSVGTVVSLSQDSGNLSFKDNKRSPETNASELESTISIAES 180

Query: 181 REDTKASPSSSLLRKRRRKGTPHRSPF 207
            E+TK S SS   RKRR K  PHR+PF
Sbjct: 181 MEETKTSTSSLQPRKRRVKSIPHRAPF 207

[Close]

BLAST of Sed0000563 vs. ExPASy TrEMBL
Match: A0A6J1D0E9 (uncharacterized protein LOC111015876 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015876 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.1e-69
Identity = 142/207 (68.60%), Postives = 158/207 (76.33%), Query Frame = 0


Query: 1   MESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCTVHDLHRQVHIWKYVY 60
           ME+DW+GTLLN+KFFTSCD+H  LRKNEKNK C+DCS+SFCKNC VHDLHRQ        
Sbjct: 1   METDWIGTLLNTKFFTSCDLHPTLRKNEKNKFCIDCSISFCKNCRVHDLHRQ-------- 60

Query: 61  HEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQD 120
                              TYKVNGE+ VHL SR QSVDTKSPK KS GSCEDCGR+VQD
Sbjct: 61  -------------------TYKVNGEVSVHLNSRRQSVDTKSPKAKSRGSCEDCGRHVQD 120

Query: 121 PNRFCSIACKVSVDS-KLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAES 180
           P RFCS+ACKVSV+S K+K Q IG I+S S DFGNLS+KE+TS ETNASELESTIS+AES
Sbjct: 121 PYRFCSVACKVSVNSVKVKGQSIGTIISPSLDFGNLSYKERTSPETNASELESTISIAES 180

Query: 181 REDTKASPSSSLLRKRRRKGTPHRSPF 207
            E+ KASPSSS  RKRRRKG PHRSPF
Sbjct: 181 IEEIKASPSSSRPRKRRRKGIPHRSPF 180

[Close]

BLAST of Sed0000563 vs. TAIR 10
Match: AT2G01818.1 (PLATZ transcription factor family protein )

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-40
Identity = 99/217 (45.62%), Postives = 133/217 (61.29%), Query Frame = 0


Query: 2   ESDWLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNC--TV---HDLHRQVHIW 61
           E  W+ TLLNS+FF  C  H  LRKNEKN  C+DC+V  C++C  TV   H LHR++ I 
Sbjct: 10  EEVWIETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHRRLQIC 69

Query: 62  KYVYHEVVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTK-SPKTKSGGSCEDCG 121
           KYVY +V+R+ +++ +F CSEI TYK+NGE  +HL SR Q+ D + S K K+G SC  C 
Sbjct: 70  KYVYQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVTCK 129

Query: 122 RYVQD-PNRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELES-T 181
           RY+QD PN FCSI+CK+S  SK    C    L  S     +  KE +++E +  E +S T
Sbjct: 130 RYIQDHPNLFCSISCKISTPSKKHKFCFSPKLEQS-----VLEKEHSTQEGSLEEKKSCT 189

Query: 182 ISMAESREDTKASPSS----SLLRKRRRKGTPHRSPF 207
            S+ +  ED++   S      LLR  +RKG   RSPF
Sbjct: 190 SSLTDVSEDSEVLLSDFSFRPLLRILKRKGISRRSPF 221

[Close]

BLAST of Sed0000563 vs. TAIR 10
Match: AT2G12646.1 (PLATZ transcription factor family protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-23
Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 5   WLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNCT-VHDLHRQVHIWKYVYHEV 64
           WL  L   KFF  C  H   +KNE+N  C+DC  S C +C   H  HR + + +YVYH+V
Sbjct: 8   WLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYHDV 67

Query: 65  VRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQDPNR 124
           VR++D++K   CS +  Y +N    V +K R Q+   K     +G  C  C R +Q+P  
Sbjct: 68  VRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKG----AGNYCTSCDRSLQEPYI 127

Query: 125 FCSIACKV 132
            CS+ CKV
Sbjct: 128 HCSLGCKV 131

[Close]

BLAST of Sed0000563 vs. TAIR 10
Match: AT1G31040.1 (PLATZ transcription factor family protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-22
Identity = 74/227 (32.60%), Postives = 106/227 (46.70%), Query Frame = 0


Query: 5   WLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNC-TVHDLHRQVHIWKYVYHEV 64
           WL  L+   FF+SC +H   RK+EKN  C+ C +S C +C   H  H  + + +YVYH+V
Sbjct: 21  WLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQVRRYVYHDV 80

Query: 65  VRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQDPNR 124
           VR+ D+EK   CS +  Y +NG   + L  R Q     S    S   C  C R +Q+P  
Sbjct: 81  VRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQ-----SRAKVSSNVCFTCDRILQEPFH 140

Query: 125 FCSIACKVSVDSKLKNQCIGIILS-SSPDF--------GNLSFKEKTSRE--------TN 184
           FCS++CKV   S   +    I+      DF        G+    E ++ E        ++
Sbjct: 141 FCSLSCKVDYLSYQGDDLSSILYRIDESDFTFEGLRMDGHDQLGEISTMEDGEDILVISD 200

Query: 185 ASELESTISMAESREDTKASPSSSLL-------RKRRRKGTPHRSPF 207
            SE  +     E ++  K  P S+ L          RRKG PHR+PF
Sbjct: 201 ESEQGNNSHKKEKKKSKKKKPESNYLPGMVLSSLGNRRKGAPHRAPF 242

[Close]

BLAST of Sed0000563 vs. TAIR 10
Match: AT3G60670.1 (PLATZ transcription factor family protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 5   WLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDCSVSFCKNC-TVHDLHRQVHIWKYVYHEV 64
           WL  LL  KFF +C  H + +KNEKN LC+DC ++ C +C + H  HR + I +YVY +V
Sbjct: 9   WLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYRDV 68

Query: 65  VRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGRYVQDPNR 124
           +RV+D  K   CS I  Y  N    V +  R QS   +     SG  C  C R +Q P  
Sbjct: 69  LRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRG----SGNICITCDRSLQSPYL 128

Query: 125 FCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESREDT 184
           FC ++CK+S D  ++ + +   L        L   ++ +  T +S LE T S   S E +
Sbjct: 129 FCCLSCKIS-DVIMRQRGLSGFLRVC---NVLDLTDEVTTTTPSSTLEPTGSNRTSSESS 180

[Close]

BLAST of Sed0000563 vs. TAIR 10
Match: AT5G46710.1 (PLATZ transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-18
Identity = 70/205 (34.15%), Postives = 97/205 (47.32%), Query Frame = 0


Query: 5   WLGTLLNSKFFTSCDVHHNLRKNEKNKLCVDC-SVSFCKNC-TVHDLHRQVHIWKYVYHE 64
           WL  LLN  FF  C  H +L + E    C+DC + SFC  C + H+ HR + I    YH 
Sbjct: 30  WLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSYHN 89

Query: 65  VVRVQDMEKHFCCSEIHTYKVNGEICVHLKSRGQSVDTKSPKTKSGGSCEDCGR-YVQDP 124
           V +V +++K+   S I TY +N    + L  R QS     P      +C  C R   ++ 
Sbjct: 90  VTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQS----KPGKGFTNACMVCYRGLAENC 149

Query: 125 NRFCSIACKVSVDSKLKNQCIGIILSSSPDFGNLSFKEKTSRETNASELESTISMAESRE 184
            RFCSI CKV+  S +  + +    + S +  N S       E N+S  E+  S  +S  
Sbjct: 150 FRFCSIGCKVAGTSGVFQKRVKHTTNDSDNSNNSS-----GVENNSSGAENGNSNLQSLS 209

Query: 185 DTKASPSSSLLRKRRRKGTPHRSPF 207
                     LRKR RKG PHR+PF
Sbjct: 210 PPTPQFPPRSLRKRLRKGIPHRAPF 225

The following BLAST results are available for this feature:

BLAST of Sed0000563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599925.1	1.4e-94	85.85	hypothetical protein SDJN03_05158, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030608.1	1.4e-94	85.85	hypothetical protein SDJN02_04645 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022942707.1	1.4e-94	85.85	uncharacterized protein LOC111447662 [Cucurbita moschata]	[more]
XP_022996504.1	5.2e-94	85.37	uncharacterized protein LOC111491731 [Cucurbita maxima]	[more]
XP_023548890.1	1.2e-93	85.92	uncharacterized protein LOC111807405 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0000563 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3Q4	4.2e-22	39.06	Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0000563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FR06	6.6e-95	85.85	uncharacterized protein LOC111447662 OS=Cucurbita moschata OX=3662 GN=LOC1114476...	[more]
A0A6J1K8W8	2.5e-94	85.37	uncharacterized protein LOC111491731 OS=Cucurbita maxima OX=3661 GN=LOC111491731...	[more]
A0A6J1D096	3.5e-88	79.71	uncharacterized protein LOC111015876 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KL89	1.5e-78	70.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G023890 PE=4 SV=1	[more]
A0A6J1D0E9	2.1e-69	68.60	uncharacterized protein LOC111015876 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0000563 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01818.1	6.0e-40	45.62	PLATZ transcription factor family protein	[more]
AT2G12646.1	3.0e-23	39.06	PLATZ transcription factor family protein	[more]
AT1G31040.1	3.3e-22	32.60	PLATZ transcription factor family protein	[more]
AT3G60670.1	1.1e-20	35.56	PLATZ transcription factor family protein	[more]
AT5G46710.1	1.3e-18	34.15	PLATZ transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006734	PLATZ transcription factor	PFAM	PF04640	PLATZ	coord: 57..131 e-value: 5.2E-20 score: 71.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..186
None	No IPR available	PANTHER	PTHR31065:SF41	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 3..206
None	No IPR available	PANTHER	PTHR31065	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 3..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000563.1	Sed0000563.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding