Sed0000544 (gene) Chayote v1

Overview
NameSed0000544
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG09: 4838394 .. 4844385 (+)
RNA-Seq ExpressionSed0000544
SyntenySed0000544
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGCCTACTGCATTGGCTCACCAAATGCTTTAACGCACTCCTTGCCGTTAATCTGAACCACAAGTACTTCACTACGACAAGGGCAGACGATTACACCATCTGGGTCGAAAAGATCAACAACAGGAAAAGGTATTTTGTCGAGATCTCTAAGGTCGACAATAACGGCAGGCATAACAAACTAGTTGTTCCTATTGGTGACAATAGATGGGGGTGGCGTGCTTTTCATACTCTCCTAGAAGGCTCTTCACAACCAGCTGATTTAAAGAATGGAGCTGAGAGTAACAGATCAGAGCATTCATCCTCTGCTAATTTCGCTGTTGCAATTAAAGCCCCGCCATTTAAGAGGGAAGAGGAGATGCTACCATTTAATGAAGAACAGAGTAAATTAAAAAAGTCATCCTATTTGAATGCTTTTACTAAGGGGAAAAGCTTTATAGCTCAACAACCATCTCCTCGTATTTGCCATCAACATTATTCGGCATCATCCACTGCTCTACGACGAAGAAAAACAAAAGTAAATGGGTTTATCGGAAGATGGACAGAAACAGAGCTCCCTCCCCGGATCTTGTAGATCCATCTATCTTCTGCCATAGGGTGATGTCCCCAGATAAGCACGATCTTTTCTTTTTGGCGGAATTCAGAGATCCTCCAGCGACCGGAATCCCATCACAGAATCCTCCGACGATCATTGATAGGGGCGCGAGGTTCGTAGAGCTGACCGAACTAGACTTGTCTGTAACAACATCGAGCCACTCCCCGCAGGAAGAACAGGTTCTTGGTCTAAGAGTGGGTCCATCTTTGCTGCTATCCAATTAATATCATCCTCTATCCCGGACTCTCTCCTCTTTACCCAGTGGTTATTCATCTGACCCAATACCCATCAACCTCAATCTGCCTAACCCGTCCTCTATTAACAAAAAACCATCTAAAACCATATCTATAAACCAGAAACAAACCATTTTCGTTCCTGGAACAAAACTAACCACCAACCCACCTATTCTAGCCATCACAGATACCGAAGGCCTATCCTCCCCATACCCATCTTCTCCTTCCCATTCCTTCCCCGAATCAGAAAATCCTTACCATTCCCAATCTGAACCAGAACATCCTCACCCTTTGCAGATTGCTTACCCAGCTGAGATTGGCCACTCTTACACTATGAACGACTCCAAGAATTATTATAAGAGGAGTAGAACCAAGCTGGATCCTAATATTCATCCTTCTGCTCTGTTAGGGGTCATTATTCCTTGGTTGAAAACCATGGGATTGGGTATTCTTCCTCTCCCCACGAAGCTTACTAAACTGATGAAGGAAGCCAGGAAGAAGAACAATGCTTACAGAGAAATTATCAATCTTACTTCTAATGTGAATTATGATTGCTCTCTTAATGAGGTAGAACAGGGGGGGTTGAATTATTCTACATGATTTACATCTCCTGGAATGTTAGAGGCCTTGGAAACAATGGGAAAAAGGCTATCATCAAGAGTTCCTTATTGAAGTATAATCCTACGGTGGTGCTGCTACAAGAGACTAAATCTAAGGACATCGATCGAGGATTTATTAAATCTTTATGGAGTGCTAGAGACGTTGCTTGGACAACAATTGATTCTATTGGAGCATCTGGAGGTCAACTGATTATGTGGAATGATCCATCCCTTGTTGTAATTGATATAAAAAAAGGTATGTACACTCTATCTATTCATATTTCTATGGCTGATGGTTTCTGTTTTTGGCTCTCCAGTGTGTATGGTCCATCTGCATCTGATCCTTCTCCTGTTTTTGGGAGGAGCTTAATAAGCTTGGGGATGATTGTGGTAGTTATTGGATCATAGGCGGCGATTTTAATGCTATCAGATGGGCACACGAAAGGACAAGCCTTGGCCTTGTCAGACCGAATATGAGGAGTTTTAATTCATTTATTGGCAGATTTGAGCTTATTGATATTCCTATTACCAATGGAATTTATACCTGGTAAGATTTTAGATCTCCTCCTACGTTATCTAAACTTGACAGGTTCCTGGTTACACAAGAATACATGGATCATTTTAAGGAGCTTCATTGTAGAAGGATTGAAAGACATACTTCAGATCACTACCTTCTTTTACTTACCATTGCTAAGCAGAGATAGGGTCCCACCCCGTTTCGGTTTTAAAATATGTGGATGAAACACAAAGATTTTTATCCTATGATGACTGAATGGTGGAATAACAACGCGCTGTCTGGATGGCCTGGTCATGGCTTTATTAAAAAGCTGAAAGATTTTAAACTTGTGATCAAAGAATGGAATAAGGAATCTTTTGGTAATATTTTGGAGCAGAAAGATAAGCTTGCCCTTGAGTTATCTATTCTCGACGATTTTGAAGAATCTGGGCTCCTCATGCCCGTCCAAGCACAACAAAGAATTTCCATAAAATTACAATTATTATCAATTGCCATCAATGAAGAAGCTCTATGGAAACAAAGCTGCAAAAAACTTTGGCTCGAACTGGGCGATGAAAATTCATAGTTATTTCATCGTATTGTAGCTGTAAGGAAGAGGAAAAGCTCTATTATAGAAGTTCTCTCACCCAATGGTGATAGCCTTACTTTAGATTCCGAGATTGATAAGGCATTCATATCCTTCTATGAAAAACTATTCACGAAACAGTTGAGGAAAGGTTCTTTCCCTTTGCAGCTTGACTGGTGTCAGATCACAAATGCTCAAGCCCTTTCTTTGGAAGAACCTTTTACGGAGAAAGAGATTTGGGAGGCCATCTGTAATCTTGGCATCAACAAATCTCCTGGTCCAGATGGCTTTACTGCGGAATTCTACAAAAACTCATGGCACATCCTTAAACTCGATATTCTGAGAGTGTTCCATGAGTTTTTTAAGAATGGCATAATTAATGCTAGCCTTAACGAGACTTTCATTTGTTTGATCCCAAAGAAAGTCGACGCTAGAAATGTTACCGACTTCCGACCTATTAGCCTCACCACTGGTTTATATAAAATTATCGCTAGAGTTCTTTCTCAAAGACTTAAGAAGGTCCTCCCATTTACTATTTCCGAATACCAGTCAACATTCGTGGAAGGAAGGCAGATCCTAGATCCTATTCTTATTGCCAATGAACTGATTGATGAATGGCACGGTAAAAAGAAGAAAGGTATGGTGTTAAAACTTGATATTGAAAAGGCATTTGATACTGTCGATTGGGAATTCTTGGACGACGTCCTTAGAATTAAAGGTTTTGGTTCCAGGTGGAGGAAATGGATTCGAGGTTGCATATCATCAACAAACTTCTCTATCATTATTAACGACAAACCTAGGGGCAAATTTCGTGCCTCCAGAGGCCTTCGCCAAGGCGATCCACTTTTCCCTTTCTTATTCATTCTGGTTATGGATGGATTTAGCAGAATCATGTCTCAGGCCGAGAAAGATAGTCACATAAAGGGTTTTTCGGTGGGCAACCAACTCTTATCAATTAACCATTTACAATTTGCAGACGATACATTGCTTTTTTCTAATTATGAGGACGGAGACATTGAAAGGATGTTTAAGATTATTCATGATTTCGAAATACTATCTGGCCTCTTTATTAATATCAATAAATCCGAAATGCTTGGCATTAATGTATAGGATGGGGAATTGAAAAAATTGGTGGATAGATTTGGATGCAAAAGGGGCAATTGGCCTACAAGCTACTTGGGTCTCCCTTTACAAGGAAAGCCAAAATCTATTTCTTTCTGGGAACCTATGCTTGAGAATGTTGAGAAGAAGATCTCTTCCTGGAAGAAGGGCCACATTTCTAAAGGAGGAAGACTTACTTTAATCAAGGCCACCCTCGCTAATCTTCCTACTTACTATATGTCGATATTCAAAATGCCCTGTAAAGTGGTTCAACGTCTCGAAAGATTAATCAGGAACTTCTTATGGAAAGGCAACATTGATAACAGAGGTATACATCTCATTAAATGGCAATCGGTCACCCTCCCACATGATCAAGGTGGCCTCGACATTGTGAACATGAAAATTAAAAACGAGGCTCTTCTGTCGAAATGGATTTGGAGATACAACACTGAAAAAGATGCCTTATGGAAAAGAATTATCGATGCCAAATATGGCATTTCCACATGCATTAACAAGCTGGCTCTCGTTACCAATAAGATCTATAAGGGTCCTTGGAGATCAATCCTATCGATGGGACAATTGACCCTTGATAATATCTCCTACAAGGTTAGGAACGGGAAAGATACCCTTTTTTGGGAAGATGTCTGGAGGGATGAGGCCCCATTGGCAATTAATTATCTGCTCATCCATTCCTTATCAAGAAAAAAAGGATGTGTGGTGAGCTCCATGTGGAATCAGGGACAGTCGGCTTGGGACTTGGGGCTTAGACGGAATTTGAAGGAAGGGGAAATTGTAGAATATTGTGCTTTATCTTTGCTCCTCAATTCGGTGGCTATAGTTGATGATGATGATTTGGCTGTTTGGAGGGCGGATCCTCTAAATCCTTTTCTCAGTGAATTCTATGGTGAAAGTTTTGTCCCACAGTCCCGGATGGCCACCCACCCAATCTCTATGAGCCAATTTGGAAAGGAAAATATCCTAAGAAGATCAAATTTTTTATGTGGGAATTATCGCATGGTGCTTTAATGACAAATGATAAGCTCCAGATGAGGCTTATGCATAGAGCCTTGTCTCCGCAATGGTGTTCTATTTGTAGAAATGATTCTGAATCCACTCTCCACCTATTTAGCAAGTGCACATATGCAACAAGGTTTTGGAACTTTATCAGAGACGCTTTCAATTGGCCGATTACTCTGCAGCCGGATCCATTTTCATTATTATCAATTACTCTTATGGGCCACCCATTCAAGAAGGAGAAGAAATTATTATGGGAGCATTTTATCAGAGCCTTTTGTTGGAATATATGGCTTGAGAGAAACAGAAGAATCTTTAAGGATATATGCTCTACTTTTGATAATTTTTTGGACACCATCACCTTTAATGTCATATCTTGGTGCAAGCTTAATCCGTTATTTTGTACTTATAGCTTTGAAACTTTATTTAATTACTGGAGATCGCTTATCTGATCTCATGTAATATATATCTCTATATTGTAATTTCATGAATCAATGAAATTGTCTCTTATCCAAAAAAAAGCCTAGCCTCAAAATTGAGTTCTCAATGTAAATATTTTTATGATTACTCACTATTGAGATTTTTGGTGACATTGGGTGTGTTTCATCCTCATCCTATCTTTTTTTTTTATATTCGGGTGTCTTCAGCTCGCTTATGTGCCTCGACGATTCTCACAAGATAAATTGTCTTTATCCTATGACATTTTTTTGTCAAGTACAGTCCTAGGAAATTGATTCCTTGATATATGGTCACCATAGATTAAAATCGAGACCTCCATACTGGTCATTCGAAGCGCGTAAAGGTTGATAGTTGAATATTATGTATGTTTTATATATTATTTTAGTTAAAACTACATTTATGTCCATGAAAAGTGTTTTTATTGTGTACACACAAACACACACACACACACATATATATATAATATATATATATTAGTTTTTGTGTTTTTTTATATAGTGCGCCTTAAGTAAAAAAAAATCCTCGCCTTTTGGTGCGCCTTGTGCCTCAAGCTCCAAAAGGCCTATTGTGCCTTAGTGTCCCTGCGCTTTTTAAAACACTGGAACTCATAGGCCATCTCGACCTGACCACTTGGTCAACCCAGGATGGTTCATCGTAATTCTATCTTTTGTTTTTCTTCTTTTTCCATGGTGTTTCTTTTTCTAAAGAAAACAGTATTAATGTTATTAATTTAATTGACTGTAATTTCTCCTCTGCATGTTTTGATTTTGCAGGATCCATTTCTGAAACCAAAGGAAAGGAAGCCGGAACCAACTACAAAATGAAAGGTATTTGCAGGGAAGGTTCCAATTTAAGTCATCTAGAGCTTGTACCTGGATTGGCCTTGTCTCCAACTTTGTTATTTTGA

mRNA sequence

ATGGCACGCCTACTGCATTGGCTCACCAAATGCTTTAACGCACTCCTTGCCGTTAATCTGAACCACAAGTACTTCACTACGACAAGGGCAGACGATTACACCATCTGGGTCGAAAAGATCAACAACAGGAAAAGGTATTTTGTCGAGATCTCTAAGGTCGACAATAACGGCAGGCATAACAAACTAGTTGTTCCTATTGGTGACAATAGATGGGGGTGGCGTGCTTTTCATACTCTCCTAGAAGGCTCTTCACAACCAGCTGATTTAAAGAATGGAGCTGAGAGTAACAGATCAGAGCATTCATCCTCTGCTAATTTCGCTGTTGCAATTAAAGCCCCGCCATTTAAGAGGGAAGAGGAGATGCTACCATTTAATGAAGAACAGAGGGAAAAGCTTTATAGCTCAACAACCATCTCCTCGTATTTGCCATCAACATTATTCGGCATCATCCACTGCTCTACGACGAAGAAAAACAAAAGTAAATGGGTTTATCGGAAGATGGACAGAAACAGAGCTCCCTCCCCGGATCTTGTAGATCCATCTATCTTCTGCCATAGGGTGATGTCCCCAGATAAGCACGATCTTTTCTTTTTGGCGGAATTCAGAGATCCTCCAGCGACCGGAATCCCATCACAGAATCCTCCGACGATCATTGATAGGGGCGCGAGGTTCGTAGAGCTGACCGAACTAGACTTGTCTGTAACAACATCGAGCCACTCCCCGCAGGAAGAACAGAAACAAACCATTTTCGTTCCTGGAACAAAACTAACCACCAACCCACCTATTCTAGCCATCACAGATACCGAAGGCCTATCCTCCCCATACCCATCTTCTCCTTCCCATTCCTTCCCCGAATCAGAAAATCCTTACCATTCCCAATCTGAACCAGAACATCCTCACCCTTTGCAGATTGCTTACCCAGCTGAGATTGGCCACTCTTACACTATGAACGACTCCAAGAATTATTATAAGAGGAGTAGAACCAAGCTGGATCCTAATATTCATCCTTCTGCTCTGTTAGGGGTCATTATTCCTTGGTTGAAAACCATGGGATTGGGTATTCTTCCTCTCCCCACGAAGCTTACTAAACTGATGAAGGAAGCCAGGAAGAAGAACAATGCTTACAGAGAAATTATCAATCTTACTTCTAATGTGAATTATGATTGCTCTCTTAATGAGTATAATCCTACGGTGGTGCTGCTACAAGAGACTAAATCTAAGGACATCGATCGAGGATTTATTAAATCTTTATGGAGTGCTAGAGACGTTGCTTGGACAACAATTGATTCTATTGGAGCATCTGGAGGTCAACTGATTATGTGGAATGATCCATCCCTTGTTGTAATTGATATAAAAAAAGGATCCATTTCTGAAACCAAAGGAAAGGAAGCCGGAACCAACTACAAAATGAAAGGTATTTGCAGGGAAGGTTCCAATTTAAGTCATCTAGAGCTTGTACCTGGATTGGCCTTGTCTCCAACTTTGTTATTTTGA

Coding sequence (CDS)

ATGGCACGCCTACTGCATTGGCTCACCAAATGCTTTAACGCACTCCTTGCCGTTAATCTGAACCACAAGTACTTCACTACGACAAGGGCAGACGATTACACCATCTGGGTCGAAAAGATCAACAACAGGAAAAGGTATTTTGTCGAGATCTCTAAGGTCGACAATAACGGCAGGCATAACAAACTAGTTGTTCCTATTGGTGACAATAGATGGGGGTGGCGTGCTTTTCATACTCTCCTAGAAGGCTCTTCACAACCAGCTGATTTAAAGAATGGAGCTGAGAGTAACAGATCAGAGCATTCATCCTCTGCTAATTTCGCTGTTGCAATTAAAGCCCCGCCATTTAAGAGGGAAGAGGAGATGCTACCATTTAATGAAGAACAGAGGGAAAAGCTTTATAGCTCAACAACCATCTCCTCGTATTTGCCATCAACATTATTCGGCATCATCCACTGCTCTACGACGAAGAAAAACAAAAGTAAATGGGTTTATCGGAAGATGGACAGAAACAGAGCTCCCTCCCCGGATCTTGTAGATCCATCTATCTTCTGCCATAGGGTGATGTCCCCAGATAAGCACGATCTTTTCTTTTTGGCGGAATTCAGAGATCCTCCAGCGACCGGAATCCCATCACAGAATCCTCCGACGATCATTGATAGGGGCGCGAGGTTCGTAGAGCTGACCGAACTAGACTTGTCTGTAACAACATCGAGCCACTCCCCGCAGGAAGAACAGAAACAAACCATTTTCGTTCCTGGAACAAAACTAACCACCAACCCACCTATTCTAGCCATCACAGATACCGAAGGCCTATCCTCCCCATACCCATCTTCTCCTTCCCATTCCTTCCCCGAATCAGAAAATCCTTACCATTCCCAATCTGAACCAGAACATCCTCACCCTTTGCAGATTGCTTACCCAGCTGAGATTGGCCACTCTTACACTATGAACGACTCCAAGAATTATTATAAGAGGAGTAGAACCAAGCTGGATCCTAATATTCATCCTTCTGCTCTGTTAGGGGTCATTATTCCTTGGTTGAAAACCATGGGATTGGGTATTCTTCCTCTCCCCACGAAGCTTACTAAACTGATGAAGGAAGCCAGGAAGAAGAACAATGCTTACAGAGAAATTATCAATCTTACTTCTAATGTGAATTATGATTGCTCTCTTAATGAGTATAATCCTACGGTGGTGCTGCTACAAGAGACTAAATCTAAGGACATCGATCGAGGATTTATTAAATCTTTATGGAGTGCTAGAGACGTTGCTTGGACAACAATTGATTCTATTGGAGCATCTGGAGGTCAACTGATTATGTGGAATGATCCATCCCTTGTTGTAATTGATATAAAAAAAGGATCCATTTCTGAAACCAAAGGAAAGGAAGCCGGAACCAACTACAAAATGAAAGGTATTTGCAGGGAAGGTTCCAATTTAAGTCATCTAGAGCTTGTACCTGGATTGGCCTTGTCTCCAACTTTGTTATTTTGA

Protein sequence

MARLLHWLTKCFNALLAVNLNHKYFTTTRADDYTIWVEKINNRKRYFVEISKVDNNGRHNKLVVPIGDNRWGWRAFHTLLEGSSQPADLKNGAESNRSEHSSSANFAVAIKAPPFKREEEMLPFNEEQREKLYSSTTISSYLPSTLFGIIHCSTTKKNKSKWVYRKMDRNRAPSPDLVDPSIFCHRVMSPDKHDLFFLAEFRDPPATGIPSQNPPTIIDRGARFVELTELDLSVTTSSHSPQEEQKQTIFVPGTKLTTNPPILAITDTEGLSSPYPSSPSHSFPESENPYHSQSEPEHPHPLQIAYPAEIGHSYTMNDSKNYYKRSRTKLDPNIHPSALLGVIIPWLKTMGLGILPLPTKLTKLMKEARKKNNAYREIINLTSNVNYDCSLNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSISETKGKEAGTNYKMKGICREGSNLSHLELVPGLALSPTLLF
Homology
[Close]
BLAST of Sed0000544 vs. NCBI nr
Match: XP_038880114.1 (transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-08
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 392 NEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDI 451
           N  N T V+LQ+TKS +ID  FIKS+WS+R++AW  +D+I  +G  LI+WN+ +  V ++
Sbjct: 40  NNSNATFVILQDTKSVNIDSKFIKSIWSSRNIAWAFLDAINKAGNILILWNELTTQVDEV 99

Query: 452 KKGSISETK 461
            KG +  TK
Sbjct: 100 IKGLLGGTK 108

[Close]
BLAST of Sed0000544 vs. NCBI nr
Match: KAA0038339.1 (uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-07
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++
Sbjct: 115 LKKHNPEVVLIQESKNEEFDISFIKSLWSFEDIGWYFVESQGTSGGILTLWDMSNLMVVE 174

Query: 451 IKK 454
             K
Sbjct: 175 TLK 177

[Close]
BLAST of Sed0000544 vs. NCBI nr
Match: XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-07
Identity = 28/67 (41.79%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           L ++NP VV+LQ++K   ++R  +KS+WS+  V W T+++ G+SGG LI+W + S+ V+D
Sbjct: 17  LVKFNPDVVILQKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVVD 76

Query: 451 IKKGSIS 458
             +G  S
Sbjct: 77  SIQGQFS 83

[Close]
BLAST of Sed0000544 vs. NCBI nr
Match: TYJ97056.1 (uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-07
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++
Sbjct: 115 LKKHNPEVVLIQESKNEEFDISFIKSLWSFEDMGWYFVESQGTSGGILTLWDMSNLMVVE 174

Query: 451 IKK 454
             K
Sbjct: 175 TLK 177

[Close]
BLAST of Sed0000544 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-07
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           ++  NP VV+LQETK   +D   +KSLWSA  + W+ +D+ G + G LI+WNDP L   +
Sbjct: 24  ISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAE 83

Query: 451 IKKGSISET 460
           + +G  S T
Sbjct: 84  MIEGVFSLT 92

[Close]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match: A0A2N9GSN1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30291 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-08
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 0 

Query: 358 PTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--LNEYNPTVVLLQETKSKDIDRGFIK 417
           P K+   +++  KK    RE+ NL S+VNY     L E+   +V LQETK   ID   ++
Sbjct: 594 PKKINTSVRKTAKKGT--RELKNLASSVNYGVKHLLREWRCDMVCLQETKLDCIDLRLVR 653

Query: 418 SLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDIKKGSIS 458
           SLW  + V W  +D+I  +GG LIMW+   +  +D++ G  S
Sbjct: 654 SLWGKQHVDWVALDAINTAGGILIMWDTRVVERVDVQVGQFS 693

[Close]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match: A0A5A7TAF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002130 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-08
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++
Sbjct: 115 LKKHNPEVVLIQESKNEEFDISFIKSLWSFEDIGWYFVESQGTSGGILTLWDMSNLMVVE 174

Query: 451 IKK 454
             K
Sbjct: 175 TLK 177

[Close]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match: A0A5D3BDI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001240 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-07
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 391 LNEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVID 450
           L ++NP VVL+QE+K+++ D  FIKSLWS  D+ W  ++S G SGG L +W+  +L+V++
Sbjct: 115 LKKHNPEVVLIQESKNEEFDISFIKSLWSFEDMGWYFVESQGTSGGILTLWDMSNLMVVE 174

Query: 451 IKK 454
             K
Sbjct: 175 TLK 177

[Close]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match: A0A7N2M0A0 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-07
Identity = 42/126 (33.33%), Postives = 60/126 (47.62%), Query Frame = 0 

Query: 346  WLKTMGLGILPLPTKLTKLMKEARKKNNAYREIINLTSNVNYDCS--------------L 405
            W++        L  K+T   K    K+   RE+ NL S+VNYD                L
Sbjct: 1288 WIERETEAAKVLNRKVTASRKVVIYKDKGKRELRNLQSSVNYDGRGLNDSRKRSIVKNLL 1347

Query: 406  NEYNPTVVLLQETKSKDIDRGFIKSLWSARDVAWTTIDSIGASGGQLIMWNDPSLVVIDI 458
             E+   V+ LQETK  D+DR  + SLWS   V W  +D++  +GG L+MW+   L  ++ 
Sbjct: 1348 REWKCDVICLQETKLSDLDRQMVGSLWSCPYVDWVALDAVQTAGGVLLMWDSRVLERLEF 1407

[Close]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match: A0A5A7VKI3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00160 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-07
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 0 

Query: 5   LHWLTKCFNALLAVNLNHKYFTTTRADDYTIWVEKINNRKRYFVEISKVDNNGRHNKLVV 64
           L WL   F  LL      ++F   R ++Y +WV+K  NRK Y  EI +VD+ GR   ++V
Sbjct: 21  LEWLKSTFKTLLDTPRTTRFFLKKRFEEYCLWVQKTYNRKGYIAEIYRVDDRGRKCCILV 80

Query: 65  PIGDNRWGWRAFHTLLEGSSQPADLKN 92
           P G  + GW  F +LL G    +  +N
Sbjct: 81  PEGSEKSGWAQFVSLLHGKKDASTKEN 107

The following BLAST results are available for this feature:
BLAST of Sed0000544 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880114.12.1e-0846.38transcription factor IIIB 90 kDa subunit-like isoform X3 [Benincasa hispida][more]
KAA0038339.11.8e-0746.03uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa][more]
XP_031739979.13.0e-0741.79uncharacterized protein LOC116403332 [Cucumis sativus][more]
TYJ97056.13.0e-0746.03uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa][more]
XP_022158956.15.2e-0743.48uncharacterized protein LOC111025405 [Momordica charantia][more]
BLAST of Sed0000544 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9GSN16.6e-0837.25Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A5A7TAF58.6e-0846.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDI91.5e-0746.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7N2M0A01.5e-0733.33Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A5A7VKI32.5e-0736.78DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Sed0000544 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000544.1Sed0000544.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0004518 nuclease activity