Sed0000486 (gene) Chayote v1

Overview


Name	Sed0000486
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cytochrome c-type biogenesis protein
Location	LG09: 39317613 .. 39320647 (-)
RNA-Seq Expression	Sed0000486
Synteny	Sed0000486

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAACCTAGATGCCATTTTCTTCTCTCATTGCGAGAAGGCACCTCACTCGTCCATCTTTCTCGCGCCATTCACAGCCACTCCGATTCTCCGATTTACACAGTTCTCATTGACGGCGGCGATTAATCGGCAGCAACAGACCAATCACGTCTCTCATTTTATCGGCCGCCACTTGAGGTTTGATTTCTCAATTTCTGGTTCTTAATCTGCAAACCGAAACGAATCCATGTTCTCTGATGTTTGTTCCGGACCTCGGATCCATTTTTTGGTTCTTGAAATTTTCTGATTTTCCATCTAGTTTAGTGCATGACCCAACATTTAGGATAAGGGGGCTATTTTTGTTCTGTGTTTTTTTAGGGCATTTGTGTGGGAATGGTCGGAAAATTGGGTCTGGGTCTGGGTCGACGTTTCCTTTTTTTTTTTTGAGTACATATTGGACGAGGGGGATAAATGCCAATTCCTTGACGCTGGTGTTGAATTGGTTTACAACCAAACACTGAAATTATTGCGTTAGTGACTCATTCGGTATAACTGTTTCCTTCAACAAGGTTTTTGTTTCATTTTCTTTTGGGAAACTTACGGGACTTGTCAAATAAATCAAGAAAATAATTATAAATATGGTTACTTGGTAAAATTTGTAAATATAATTATTGATACTAATGAGTGACGCACTTTCTTCTTATATGTATTGATAAATGTATTAACTACTATCGATGTAAATATTTTAAAATTTAATTGCATATGTAATTACTTTGAGTGAAGTGACCATCCAATACAATTTCCCTTGTATATATATATATATCTTTTATTGTCAAGACTAACTCGAATACACCTCGACTAATGAAACGAGTCTGACTCAACATTTGAATGTGATTTAATAGTCCGTTGGTCAAGAAGAAACTAAGAGGTGAATGAATCATATTGATCATCTAATAATTAATTTTTTAATCGAGTTGGATGTAAGTTATATGAGGACTGAGATACTCATAGATATGTTTATAAAATAATTTGTTTCATATTCGTAATTTATGCGACGAGGACGAGTAACGGGTGGTTGATTCCTAATGTTTCTGTTCTCCCTCTTTGTACTGATTTTTTTCTTACATGTTCGATGTTTTTGTGAGATTTTCGGCTATAAAGGTTCATATTTTTGAACTTGTGTTTTGCATTCGAATGATTTATGGGTCTTTTCTTGCTCAGCGCTGAGGTGGCACGGAGTGTAAAATGGAGGGCGATGAAGATGCTTTGAAGAGCAGGCAGCTGGTGGAAGCTCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGTGGTAGTCAATCCATTGAAGACTCCCAAGCAGATATTGCGATTCTCCTCAGAAAGGTACATAACCCATTAACCAAAAAAGCTTAAGCTGATAACCATCATGGATGGATTAATTTAGTGGTTAGGAAGGTCTTGTAGAATTAAAAAGTTGCGGGTTCAAGTTCAATTTATGGCAACCGCTTATTTAGAAATTAAATTTCTTTCTTAGCATCTAAATGTTGTAGAGTCAAAGACGGTTTGTCCAGTGAGAAGTTGAGGAGTGCATAAGTTAGCTTCTAGTCTTGGACTCTCACGGATAAATTTTTTTGTGAAGTGGATAAGTTGTGGTAATTTAACCATCATGGAGTGGCCTGGTGATGAAAGAGGGTCTTGAGGTACTAAAGGTGATAGGTTCAATCCATAGTAGCCAACTACCTAGGAAATAATTTCCTATGGGTTTCCTTGACATCCAACTGTTGTAGGGTCGGACAGTATGTCACATGACATTAGTCAATGGTCCAACACTTCCCTCACTCGTGGGCTTGAAAATTTGAAAAAGGTCCTTCAAGTAGAAATTAATATTAATTGGTGAAGAAATGAAACGACTTGACAGGGGAATATACCTTACAAAAAAGCAAGCCACTAATGGCTAGCATTTCTGTGGAATAATTGCTAAGAAGACGCGACTTTCAGCTCCATTCTGCTGCAGAAAGGGTGATATCTTCCGAGAGAGGGTGATATCTTTCAATGTTGAATCAATCAACCGAAAAACTTAAGCTTATAGATTGGAGTAAAATAAACTTAATTATACCAACCAATAGAAAGTAATGAAAGGCTCTTGAAAAGGTGTAATTACAAAGTCTACTGAGAAAACTGATTTACAGATCATGAATCTTCGTTACATAATGATTACTGATGTGTTGAGTTTTATATCATGTACTAATCATTTTAAGATCAATATTTTTCTGCAATTAATCTTCCCTGATATTCGGTTGAATTTGTAATATCACTGTAGTTGATCCGAGACGAGATTCGGTCTGGGAAATCGGACAAGGACATCTACAAAAAGCTCGAGAATGAGTATGGGGAGACGATTCTGTACACCCCAAAGTTCGACCTTCAAACTGCAGCACTATGGCTATCACCGGTCAGTTATATCAGCAAGAAACTCAAATCTAAGTGAATATTTCTGCTAATTTCTTATTCTAATTTTAGTTTTGAATATTATGTTACTTTGGAGCAGTTGTTAGTGGCTGGTGGTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATAATGGCTTTAAATCTTGTCAGGGGTGTTCCATTGACACCCAAAGAGAAGCAAACCATGTTGGATCTTCTTTCACCTCCACCTTCTCAGAGAAGTATTTCTTCCTGGTGGAGGACTTGGCAAAGGCAATGAACTACAGGTATGGTTGAAGATCAATAAACTAGATTACAATTAGGACAATCAGCTTTTGAGTGAGTGAGATTAATTTAGTTTTTTGTCCGGCTGATTGGCGTGTATCTTCGACCAAGAAATCGCAGGTTCGACCCTCAAACCCTCTTACTCGTGTGAATCATGATGCGATATTGTGTACCGTATACTGTGACCAATTTGTGATTAACATTTTTATAATTGAGAAATATTTATAAGTGATACCTTGATGCCCATTCATGTGGCCAAATATGAGTCACATCTTTTTTTTTTTGGGA

mRNA sequence

AAAAAAAAAAAAAACCTAGATGCCATTTTCTTCTCTCATTGCGAGAAGGCACCTCACTCGTCCATCTTTCTCGCGCCATTCACAGCCACTCCGATTCTCCGATTTACACAGTTCTCATTGACGGCGGCGATTAATCGGCAGCAACAGACCAATCACGTCTCTCATTTTATCGGCCGCCACTTGAGCGCTGAGGTGGCACGGAGTGTAAAATGGAGGGCGATGAAGATGCTTTGAAGAGCAGGCAGCTGGTGGAAGCTCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGTGGTAGTCAATCCATTGAAGACTCCCAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGAGACGAGATTCGGTCTGGGAAATCGGACAAGGACATCTACAAAAAGCTCGAGAATGAGTATGGGGAGACGATTCTGTACACCCCAAAGTTCGACCTTCAAACTGCAGCACTATGGCTATCACCGTTGTTAGTGGCTGGTGGTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATAATGGCTTTAAATCTTGTCAGGGGTGTTCCATTGACACCCAAAGAGAAGCAAACCATGTTGGATCTTCTTTCACCTCCACCTTCTCAGAGAAGTATTTCTTCCTGGTGGAGGACTTGGCAAAGGCAATGAACTACAGGTATGGTTGAAGATCAATAAACTAGATTACAATTAGGACAATCAGCTTTTGAGTGAGTGAGATTAATTTAGTTTTTTGTCCGGCTGATTGGCGTGTATCTTCGACCAAGAAATCGCAGGTTCGACCCTCAAACCCTCTTACTCGTGTGAATCATGATGCGATATTGTGTACCGTATACTGTGACCAATTTGTGATTAACATTTTTATAATTGAGAAATATTTATAAGTGATACCTTGATGCCCATTCATGTGGCCAAATATGAGTCACATCTTTTTTTTTTTGGGA

Coding sequence (CDS)

ATGGAGGGCGATGAAGATGCTTTGAAGAGCAGGCAGCTGGTGGAAGCTCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGTGGTAGTCAATCCATTGAAGACTCCCAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGAGACGAGATTCGGTCTGGGAAATCGGACAAGGACATCTACAAAAAGCTCGAGAATGAGTATGGGGAGACGATTCTGTACACCCCAAAGTTCGACCTTCAAACTGCAGCACTATGGCTATCACCGTTGTTAGTGGCTGGTGGTGCTGTAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATAATGGCTTTAAATCTTGTCAGGGGTGTTCCATTGACACCCAAAGAGAAGCAAACCATGTTGGATCTTCTTTCACCTCCACCTTCTCAGAGAAGTATTTCTTCCTGGTGGAGGACTTGGCAAAGGCAATGA

Protein sequence

MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ

Homology

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BLAST of Sed0000486 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALK  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           KDIYKKLEN+YGETILYTPKFDLQTA LWLSP++VAG AVGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Sed0000486 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 8.3e-76
Identity = 144/158 (91.14%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALK  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLEN+YGETILYTPKFDLQTA LWLSP+LVAG AVGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR+W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Sed0000486 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 3.0e-73
Identity = 136/158 (86.08%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME ++DA+K  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IY+KLE++YGET+LYTPKFDLQTAALWLSP+LVAG A GVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLL+PPP QR+ SSWWR+W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Sed0000486 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 139/153 (90.85%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDA+K  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLEN+YGET+LYTPKFDLQTAALWLSP+LVAG A GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWR 154
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of Sed0000486 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.0 bits (720), Expect = 3.3e-72
Identity = 137/158 (86.71%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME D DA+K  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+I+KKLEN+YGETILYTPKFDLQTAALWLSP+LVAG A GVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           +VRGVPLTP+EKQTMLDLLSPPP QR+ S WWR W+ Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

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BLAST of Sed0000486 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.9e-63
Identity = 114/148 (77.03%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 5   EDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIY 64
           E+ +K RQ++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDK+IY
Sbjct: 4   EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIY 63

Query: 65  KKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALNLVRG 124
           KKL+ +YGETILYTPKFDLQTAA+WLSP++V G A GVWAY KH+Q++NVHIMALNLVRG
Sbjct: 64  KKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALNLVRG 123

Query: 125 VPLTPKEKQTMLDLLSPPPSQRSISSWW 153
           VPLTP+EK+TMLD+L+PPP     + WW
Sbjct: 124 VPLTPREKETMLDVLTPPP---PANKWW 148

[Close]

BLAST of Sed0000486 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.9e-63
Identity = 114/148 (77.03%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 5   EDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIY 64
           E+ +K RQ++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDK+IY
Sbjct: 4   EEDVKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIY 63

Query: 65  KKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALNLVRG 124
           KKL+ +YGETILYTPKFDLQTAA+WLSP++V G A GVWAY KH+Q++NVHIMALNLVRG
Sbjct: 64  KKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALNLVRG 123

Query: 125 VPLTPKEKQTMLDLLSPPPSQRSISSWW 153
           VPLTP+EK+TMLD+L+PPP     + WW
Sbjct: 124 VPLTPREKETMLDVLTPPP---PANKWW 148

[Close]

BLAST of Sed0000486 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 101/156 (64.74%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  K  Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IY KLE+E+GET+LY PKFDLQTAALWL+P+++AGG      Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRSISSWWRTW 156
           L+RGVPLTPKE+ T+LD+L PP P  + + S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Sed0000486 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-18
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 6   DALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYK 65
           D + S    E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G S+  +  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENEYGETILYTPKFDLQTAALW-LSPLLVAGGAVGVWAYSKHKQKSNVHIMALNLVRG 125
            L   YGE +L  P+F+ QT  LW L PLL+ GG + +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 126 VPLTPKEKQTMLDLLS 141
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of Sed0000486 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 6   DALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKDIYK 65
           D + +   +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G SD+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 66  KLENEYGETILYTPKFDLQTAALWLSP--LLVAGGAVGVWAYSKHKQKSNVHIMALNLVR 125
            + + YGE +L  P+ + +T  LW  P  LLVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 126 GVPLTPKEKQTMLDLLSP 142
           G PL+ +EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

[Close]

BLAST of Sed0000486 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.1e-77
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALK  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           KDIYKKLEN+YGETILYTPKFDLQTA LWLSP++VAG AVGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Sed0000486 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 144/158 (91.14%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALK  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLEN+YGETILYTPKFDLQTA LWLSP+LVAG AVGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR+W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Sed0000486 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 144/158 (91.14%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME DEDALK  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLEN+YGETILYTPKFDLQTA LWLSP+LVAG AVGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLLSPPPSQR+ SSWWR+W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Sed0000486 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 136/158 (86.08%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME ++DA+K  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IY+KLE++YGET+LYTPKFDLQTAALWLSP+LVAG A GVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           LVRGVPLTPKEKQTMLDLL+PPP QR+ SSWWR+W+RQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Sed0000486 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 137/158 (86.71%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME D DA+K  QLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+I+KKLEN+YGETILYTPKFDLQTAALWLSP+LVAG A GVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRSISSWWRTWQRQ 159
           +VRGVPLTP+EKQTMLDLLSPPP QR+ S WWR W+ Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Sed0000486 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-53
Identity = 101/156 (64.74%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  K  Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IY KLE+E+GET+LY PKFDLQTAALWL+P+++AGG      Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRSISSWWRTW 156
           L+RGVPLTPKE+ T+LD+L PP P  + + S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Sed0000486 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-53
Identity = 101/156 (64.74%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MEGDEDALKSRQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME  ++  K  Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KDIYKKLENEYGETILYTPKFDLQTAALWLSPLLVAGGAVGVWAYSKHKQKSNVHIMALN 120
           K+IY KLE+E+GET+LY PKFDLQTAALWL+P+++AGG      Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PSQRSISSWWRTW 156
           L+RGVPLTPKE+ T+LD+L PP P  + + S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Sed0000486 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149299.1	1.7e-76	91.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_008452301.1	8.3e-76	91.14	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022152937.1	3.0e-73	86.08	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_038904619.1	3.9e-73	90.85	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022953979.1	3.3e-72	86.71	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of Sed0000486 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	4.9e-63	77.03	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	4.9e-63	77.03	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	1.8e-52	64.74	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	3.7e-18	37.50	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	1.4e-14	36.23	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Sed0000486 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L351	8.1e-77	91.77	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A1S4DZT6	4.0e-76	91.14	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	4.0e-76	91.14	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	1.4e-73	86.08	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1JTI4	1.6e-72	86.71	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of Sed0000486 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	1.2e-53	64.74	cytochrome c biogenesis protein family	[more]
AT1G15220.2	1.2e-53	64.74	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 3..82 e-value: 1.8E-20 score: 74.6
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 12..136 e-value: 2.8E-30 score: 104.5
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	CDD	cd16378	CcmH_N	coord: 14..79 e-value: 1.43516E-26 score: 93.3622

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000486.1	Sed0000486.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity