Sed0000346 (gene) Chayote v1

Overview


Name	Sed0000346
Type	gene
Organism	Sechium edule (Chayote v1)
Description	histone deacetylase 6
Location	LG13: 3065241 .. 3067336 (+)
RNA-Seq Expression	Sed0000346
Synteny	Sed0000346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCCACTGGTATCGTAATCGAAAACACTCCGGCCAGTTCTCTCCGGTCGCCGGAAAAACTCCCAGCTCCTCCATTTCTGTATCAGTTTCTGTTATCTTTTTCATCGCTGATCTTCGCTAATGCTGTTTTCCGGTTCTCTGTAGCCACTCATTCTCGAAGAAGAAGTCTTATACGGCGCCGAATCTGGATGGGTCGAAGCCCGGATTTCTTGCGATCATCTCGCCTCGCTATCTTCTGACCTTGCTCACATTCCTGCCCCTGATTCTGCCTGCTGCCAGTTAGTTTTTACTTTGTTGTTTATATCTTAGGTTTGGGATTTGCTGAGCTTGAATTTATGTCATTTTTATTTCTCTTGTGGTCATTTCATTGCCCAAGGGTGTTTGTGCTGAATTTATGTTTTGATTTGGGGTTTTTCTGTATTGGTCTTCGATGTTTTGATTGATTGTTGTGTTCTTGGGCTCAAAATGAAAGCTCTCAATCCAATTAAGACTTGATCTTGAACCATTACTTTTTTTTTTTTGAAACAAGGTAACCGCACCCGTCCCTAGGCCACACACAAGAGACATCGATGGAGTAATGTCACAAGTCTCGAACTTGGGACCTTGAGGGGAGCATACCCTCAAAACCCAAGTGTTCAATCATTGTCTCACCCCTTGGGGACTAGTCTTAAACCATTTCGGGTTAAAAAGGTCTAAATAACTAAGAAGTGTTAATTCATCATGGCCACCTAACCAGAAATTAAATTCCCATGGAATTCCTTGATATTAAAATATTGTAGGACCAGTTGGCCAAGTGGTATGCCCCATTCTGTGACAATAGTTGAGTTGGTCCAAATAGTCACGAATTATAAAATAAAAGGACAGTGTTTGTTGATTGTAATATAATAAACTTCAGTAGTTGATTTGGGCACAGTTTTTAAAAAATTAGTGTCTTGTTTCTTGGTTGTGGGTTTGAATATCCTTACTTCATTAATAATGAAGTACAGTATTGGCAGAAGAAAAAATCTTCTTTGAGGATTATTGGAGTCTATGATGAAGTTAGTATCTACCTTTAACATATTTAGAAAAAAACTGGCCATCGGTGGCTTTGGCCATGTTCTTCTTCCTAGATTCAAATAGGAAATCAAGAATAAACTTTCTTTCTTTTGAAGACTGTTTTATCTCGAGTCTTTATCTAAGAGGCTATCATTGGATCAACCTCGATTATTTTTACATGACAAACCACATCATCCTATAACATTTGGTTGTCAAAAAAGCTTGTAGGAAATTAATTCCTAGGTTGGCTACCATGAATTGAACCGGTAACCTTTTGGTTCTCCAAGGGTCTCTTCATTAGTAGTCCACCAACAACTTATGACTTGCTATTTCTGTATGTTAGTGTTCCATTAATGTCATACTCAAAAGATTGAATTTTTTTGTAGCTAGACATACTTCCTCGTTTTAGTGGTGTCGTACAAGTAAAAGCCTAAGTAGATTTTTGTCATCTTAACATTGCCTACTAATCTCACCAAACGAGGTTTTCTCTCTCTTTTGTGCCATCTCGGTAAAAAGCGTCAATTTTTGTATAGCATTACCTGCAAGTGGTGTATAATTCTCTGTTTATAACTGTCTTCAGTTACATTTTCATGTTTTCATTTGGTTTTTAGACTACCATCATCTGCAAAACATCTTTTTTATCTGGATTTTTAATTCAAGGGACAATCCATATTTGCTAGATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTTTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCATCAATCAACTCATAGCCTAGCACTCAGCTACAGGTAAATCTAAAATGGTTCCTAAAATAATAGTACATTACTCCTGCCCTTATGTTCTCTAAATGTTTTGTTTATTAACAATTTGCATTTGGTAACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATACTTAGATGCACAAGTGATTCAGGAATTACGATCAGTACATGAAGTTGCCTACATACTGAAATTTGGCGAGGCGCCACCATTACGATTATGTTAA

mRNA sequence

ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCCACTGCCACTCATTCTCGAAGAAGAAGTCTTATACGGCGCCGAATCTGGATGGGTCGAAGCCCGGATTTCTTGCGATCATCTCGCCTCGCTATCTTCTGACCTTGCTCACATTCCTGCCCCTGATTCTGCCTGCTGCCAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTTTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCATCAATCAACTCATAGCCTAGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATACTTAGATGCACAAGTGATTCAGGAATTACGATCAGTACATGAAGTTGCCTACATACTGAAATTTGGCGAGGCGCCACCATTACGATTATGTTAA

Coding sequence (CDS)

ATGGCGAAAGAAGCCGGCTCCTCCTCTTCCAACCCACTGCCACTCATTCTCGAAGAAGAAGTCTTATACGGCGCCGAATCTGGATGGGTCGAAGCCCGGATTTCTTGCGATCATCTCGCCTCGCTATCTTCTGACCTTGCTCACATTCCTGCCCCTGATTCTGCCTGCTGCCAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTTTTCTGTAGCCGTTTTGTGAACAAGCACATGCTTGAACATTATCATCAATCAACTCATAGCCTAGCACTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATACTTAGATGCACAAGTGATTCAGGAATTACGATCAGTACATGAAGTTGCCTACATACTGAAATTTGGCGAGGCGCCACCATTACGATTATGTTAA

Protein sequence

MAKEAGSSSSNPLPLILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLRLC

Homology

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BLAST of Sed0000346 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 121/144 (84.03%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC 60
           MA EAGSSSSNP P ++EEEV    LYGAESGWVEA  SCDHL SL SDLAHIP PD+AC
Sbjct: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60

Query: 61  CQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQ 120
           C+C+NPKENWLCLCCKNVFCSRFVNKHML+HY QS HSLALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  CECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 VIQELRSVHEVAYILKFGEAPPLR 141
           +IQELR VHEVAYILKFGEAPP R
Sbjct: 121 LIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Sed0000346 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 123/144 (85.42%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC 60
           MAKEAGSSSSNPLPLILEEEV    LYGAESGWVEA  SCDHLA LS DLAHIP PD  C
Sbjct: 1   MAKEAGSSSSNPLPLILEEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPPDIPC 60

Query: 61  CQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQ 120
            +CQNPKENWLCL CK+VFCSRFVNKHML+HY Q TH LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  SECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 VIQELRSVHEVAYILKFGEAPPLR 141
           VIQELR VHEVAYILKFGEAPP R
Sbjct: 121 VIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Sed0000346 vs. NCBI nr
Match: XP_022149228.1 (histone deacetylase 6 [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACC 60
           MA EAGSSSSN  P I+E   EE L+GAE+GWVEA   CDHLASLSSDLAHIP PD+AC 
Sbjct: 1   MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS 60

Query: 61  QCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQV 120
           +CQNPKENWLCLCCKN+ CSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAYLDAQV
Sbjct: 61  ECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQV 120

Query: 121 IQELRSVHEVAYILKFGEAPPLRLC 143
           IQELR V+EVAYILKFGEAPP R C
Sbjct: 121 IQELRPVYEVAYILKFGEAPPFRSC 145

[Close]

BLAST of Sed0000346 vs. NCBI nr
Match: KAG7030950.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-62
Identity = 121/162 (74.69%), Postives = 128/162 (79.01%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLPLILEEEV----LYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC 60
           MA EAGSSSSNP P ++EEEV    LYGAESGWVEA  SCDHL SL SDLAHIP PD+AC
Sbjct: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60

Query: 61  CQ------------------CQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALS 120
           C+                  C+NPKENWLCLCCKNVFCSRFVNKHML+HY QS HSLALS
Sbjct: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPPLR 141
           YSDLSVWCFSCDAYLDAQ+IQELR VHEVAYILKFGEAPP R
Sbjct: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 162

[Close]

BLAST of Sed0000346 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAP 60
           MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAY 120
            + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRSVHEVAYILKFGEAPPLR 141
           LDAQVIQELR VHEVAYILKFGEAPP R
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-16
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 36   CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSL 95
            C HL ++    A        C  C   +ENW+CL C  V+C R++N HML+H+  S H L
Sbjct: 1113 CPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPL 1172

Query: 96   ALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPP 139
             LSY DLS WC+ C AY+  Q + ++++   +A+  KFGE  P
Sbjct: 1173 VLSYIDLSAWCYYCQAYVHHQALLDVKN---IAHQNKFGEDMP 1212

[Close]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-15
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 36   CDHLASLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSL 95
            C HL ++    A        C  C   +ENW+CL C  V+CSR+VN HM+ H+  S H L
Sbjct: 1047 CPHLMAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPL 1106

Query: 96   ALSYSDLSVWCFSCDAYLDAQVIQELRSVHEVAYILKFGEAPP 139
             LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Sbjct: 1107 VLSCVDLSTWCYVCQAYVHH---EDLQDVKNAAHQNKFGEDMP 1146

[Close]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-14
Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 2   AKEAGSSSSNPLPLILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQCQN 61
           +  +GSSSS+  P     E++    +  V    +C HL  +           +AC +CQ 
Sbjct: 822 SSSSGSSSSSTRP-SHNLEIMDSGPAHAVVPLATCPHLKEVKPLPPAKINARTACSECQI 881

Query: 62  PKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVIQEL 121
             E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+    +   
Sbjct: 882 GAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGA 941

Query: 122 RSVHEVAYILKFGEAPP 139
           +S    A+  KFGE  P
Sbjct: 942 KS---AAHESKFGETMP 954

[Close]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 56  CCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYL 114
           C  C +  ENW+C+ C  V CSR VN H  EH+  + H ++ S+SD S WC++CD Y+
Sbjct: 34  CHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-09
Identity = 25/81 (30.86%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 35  SCDHLA--SLSSDLAHIPAPDSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQST 94
           +C H+    L+ D + +      C  C   +  W CL C +V C R++ +H L+H+ +S+
Sbjct: 6   TCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESS 65

Query: 95  HSLALSYSDLSVWCFSCDAYL 114
           H +AL  +++ V+C+ CD Y+
Sbjct: 66  HPVALEVNEMYVFCYLCDDYV 86

[Close]

BLAST of Sed0000346 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 118/145 (81.38%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MAKEAGSSSSNPLPLILE---EEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACC 60
           MA EAGSSSSN  P I+E   EE L+GAE+GWVEA   CDHLASLSSDLAHIP PD+AC 
Sbjct: 1   MANEAGSSSSNLPPCIIEEEGEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTACS 60

Query: 61  QCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQV 120
           +CQNPKENWLCLCCKN+ CSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAYLDAQV
Sbjct: 61  ECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLDAQV 120

Query: 121 IQELRSVHEVAYILKFGEAPPLRLC 143
           IQELR V+EVAYILKFGEAPP R C
Sbjct: 121 IQELRPVYEVAYILKFGEAPPFRSC 145

[Close]

BLAST of Sed0000346 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.6e-62
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAP 60
           MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAY 120
            + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRSVHEVAYILKFGEAPPLR 141
           LDAQVIQELR VHEVAYILKFGEAPP R
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Sed0000346 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 120/148 (81.08%), Postives = 127/148 (85.81%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLPLIL------EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAP 60
           MA+EAGSSS  SN LPLI+      EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAY 120
            + C QCQNPKENWLCLCCK+VFCSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRSVHEVAYILKFGEAPPLR 141
           LDAQVIQELR VHEVAYILKFGE PP R
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Sed0000346 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-61
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MAKEAGSSS--SNPLPLIL----EEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDS 60
           MA++AGSSS  SNPL LI+    EEE+LYGA SGWV+A  SCDHLASLSSDLAHIP P +
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLD 120
            C QCQNPKENW+CLCCK+VFCSRFVNKHML+HY QSTH LALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRSVHEVAYILKFGEAPPLR 141
           AQVIQELR VHEVAYILKFGEAPP R
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Sed0000346 vs. ExPASy TrEMBL
Match: A0A6J1FUZ8 (BTB/POZ domain-containing protein NPY2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447517 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 2   AKEAGSSSSNPLP---LILEEEVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSACCQ 61
           A  +  SS+  LP     L +E LYGAESGWVEA  SCDHL SL SDLAHIP PD+ACC+
Sbjct: 484 ASTSSGSSTPELPKGVKDLTKEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE 543

Query: 62  CQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQVI 121
           C+NPKENWLCLCCKNVFCSRFVNKHML+HY QS HSLALSYSDLSVWCFSCDAYLDAQ+I
Sbjct: 544 CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 603

Query: 122 QELRSVHEVAYILKFGEAPPLR 141
           QELR VHEVAYILKFGE PP R
Sbjct: 604 QELRPVHEVAYILKFGEVPPFR 625

[Close]

BLAST of Sed0000346 vs. TAIR 10
Match: AT2G14830.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.8e-51
Identity = 93/143 (65.03%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC 60
           MA++A   SSSS+P   + +E  + + GA SGWVEAR +CDHL +LS DL H+P PD+ C
Sbjct: 1   MAEKAPSSSSSSSPPKEVADETQDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPC 60

Query: 61  CQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAYLDAQ 120
            +CQNP ENWLCLCCK V CSRFVN+HML H+ Q+ H LALSYSDLSVWCF C+AYLDAQ
Sbjct: 61  SRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAYLDAQ 120

Query: 121 VIQELRSVHEVAYILKFGEAPPL 140
           +I +LR +H+ AYILKFGEAPPL
Sbjct: 121 IILQLRPIHQAAYILKFGEAPPL 143

[Close]

BLAST of Sed0000346 vs. TAIR 10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1  MAKEA--GSSSSNPLPLILEE--EVLYGAESGWVEARISCDHLASLSSDLAHIPAPDSAC 57
          MA++A   SSSS+P   + +E  + + GA SGWVEAR +CDHL +LS DL H+P PD+ C
Sbjct: 1  MAEKAPSSSSSSSPPKEVADETQDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPC 60

[Close]

BLAST of Sed0000346 vs. TAIR 10
Match: AT2G26000.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 19/61 (31.15%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 53  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAY 112
           +S CC CQ  +  W+C+ C  V C R+   H   H+ ++ H  +L      VW ++ D Y
Sbjct: 215 NSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNY 274

Query: 113 L 114
           +
Sbjct: 275 V 275

[Close]

BLAST of Sed0000346 vs. TAIR 10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 19/61 (31.15%), Postives = 31/61 (50.82%), Query Frame = 0


Query: 53  DSACCQCQNPKENWLCLCCKNVFCSRFVNKHMLEHYHQSTHSLALSYSDLSVWCFSCDAY 112
           +S CC CQ  +  W+C+ C  V C R+   H   H+ ++ H  +L      VW ++ D Y
Sbjct: 215 NSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNY 274

Query: 113 L 114
           +
Sbjct: 275 V 275

The following BLAST results are available for this feature:

BLAST of Sed0000346 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600290.1	3.5e-65	84.03	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038904979.1	2.5e-63	85.42	histone deacetylase 6 [Benincasa hispida]	[more]
XP_022149228.1	6.1e-62	81.38	histone deacetylase 6 [Momordica charantia]	[more]
KAG7030950.1	8.0e-62	74.69	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008454385.1	1.4e-61	81.76	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]

BLAST of Sed0000346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UBN7	3.1e-16	39.81	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q9Z2V5	5.8e-15	40.78	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q20296	1.0e-14	35.04	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q54QE6	1.9e-10	44.83	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
Q9H0E7	6.3e-09	30.86	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]

BLAST of Sed0000346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D695	3.0e-62	81.38	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A1S3BZ94	6.6e-62	81.76	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A5A7TNA2	1.9e-61	81.08	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A0A0KT14	2.5e-61	81.51	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A6J1FUZ8	2.0e-58	78.17	BTB/POZ domain-containing protein NPY2-like isoform X2 OS=Cucurbita moschata OX=...	[more]

BLAST of Sed0000346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14830.2	6.8e-51	65.03	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G14830.1	4.9e-09	51.67	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.1	1.1e-05	31.15	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26000.2	1.1e-05	31.15	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 55..104 e-value: 1.8E-8 score: 44.1
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 56..114 e-value: 1.2E-15 score: 57.5
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 54..115 score: 16.783726
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 30..136 e-value: 2.6E-27 score: 96.7
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..140
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 34..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000346.1	Sed0000346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009958	positive gravitropism
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0008270	zinc ion binding