Sed0000290 (gene) Chayote v1

Overview


Name	Sed0000290
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 32854427 .. 32855174 (-)
RNA-Seq Expression	Sed0000290
Synteny	Sed0000290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCCAATTTGGACTCTGTTTCTCAGACACAGAGAAATTGAAGAAATGGCGAAGAAAATGGTGTGGCGGCGGCGGCGGAGACGGCGGCGACTGCGGCGGCGGGATTCTAAAGAAGAGAATCATAAAGAAGAGGAACAAGAAGAAAACGATTCACAAAGTGATCGATTATCTGTTATCGGATTCTTACTTATTTGCTCCAATTGTTTCTCCTTATCCTTTTAATTCTTTTCCCTCACCCAGAAAAGGTTTTTTTTTTAATTATTTTTTAAAATTTCCCCATATTTTATATCCTTAAATTTTTGTACTTTTTTGTGTTAATCTTGTTTAATTTTTTTTGTTTTTGTTTTTGGTTTCTTGTTTTTAGATATTGAAATTAGGGAACGCACAAAAGATAAGCGGGGTTTGGTGGAGAAGATTGAGGATTACTTGAAATCTGATTGCTACTTGTATGCTCCCATGGTTGAACCTCAATCCTTTACAGGTACTTTTTATTTCTTGATTTAACATCATTCAAAATATGGTATCCAGCACGTGAATTCGAACCTTGATAAATTGTGAAAATGGTATAAATATAAATTTAGTCTAAGAATGTTATGGCTGTTTGTTTGACATATTTATGTAGTATCTGGGTCAACAAGTTTGTTTGACATATTTAGGTTAAGGAATTATATTGAGGAATTAAAAATAAGTGGTTAAAAATAATTGAGTAATTATAAAAATTTAAAAAGGATCCTTATGGCAGG

mRNA sequence

ATGAGGCCCCAATTTGGACTCTGTTTCTCAGACACAGAGAAATTGAAGAAATGGCGAAGAAAATGGTGTGGCGGCGGCGGCGGAGACGGCGGCGACTGCGGCGGCGGGATTCTAAAGAAGAGAATCATAAAGAAGAGGAACAAGAAGAAAACGATTCACAAAGTGATCGATTATCTGTTATCGGATTCTTACTTATTTGCTCCAATTGTTTCTCCTTATCCTTTTAATTCTTTTCCCTCACCCAGAAAAGATATTGAAATTAGGGAACGCACAAAAGATAAGCGGGGTTTGGTGGAGAAGATTGAGGATTACTTGAAATCTGATTGCTACTTGTATGCTCCCATGGTTGAACCTCAATCCTTTACAGGTACTTTTTATTTCTTGATTTAACATCATTCAAAATATGGTATCCAGCACGTGAATTCGAACCTTGATAAATTGTGAAAATGGTATAAATATAAATTTAGTCTAAGAATGTTATGGCTGTTTGTTTGACATATTTATGTAGTATCTGGGTCAACAAGTTTGTTTGACATATTTAGGTTAAGGAATTATATTGAGGAATTAAAAATAAGTGGTTAAAAATAATTGAGTAATTATAAAAATTTAAAAAGGATCCTTATGGCAGG

Coding sequence (CDS)

ATGAGGCCCCAATTTGGACTCTGTTTCTCAGACACAGAGAAATTGAAGAAATGGCGAAGAAAATGGTGTGGCGGCGGCGGCGGAGACGGCGGCGACTGCGGCGGCGGGATTCTAAAGAAGAGAATCATAAAGAAGAGGAACAAGAAGAAAACGATTCACAAAGTGATCGATTATCTGTTATCGGATTCTTACTTATTTGCTCCAATTGTTTCTCCTTATCCTTTTAATTCTTTTCCCTCACCCAGAAAAGATATTGAAATTAGGGAACGCACAAAAGATAAGCGGGGTTTGGTGGAGAAGATTGAGGATTACTTGAAATCTGATTGCTACTTGTATGCTCCCATGGTTGAACCTCAATCCTTTACAGGTACTTTTTATTTCTTGATTTAA

Protein sequence

MRPQFGLCFSDTEKLKKWRRKWCGGGGGDGGDCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRKDIEIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTGTFYFLI

Homology

[Close]

BLAST of Sed0000290 vs. NCBI nr
Match: XP_022933890.1 (uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD YLFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKG 106

[Close]

BLAST of Sed0000290 vs. NCBI nr
Match: KAG7035711.1 (hypothetical protein SDJN02_02509, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD YLFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKG 106

[Close]

BLAST of Sed0000290 vs. NCBI nr
Match: KAG6587786.1 (hypothetical protein SDJN03_16351, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD YLFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKG 106

[Close]

BLAST of Sed0000290 vs. NCBI nr
Match: XP_023532011.1 (uncharacterized protein LOC111794104 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD YLFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           E RER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKG 106

[Close]

BLAST of Sed0000290 vs. NCBI nr
Match: XP_022968868.1 (uncharacterized protein LOC111468025 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD  LFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCNLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFRG 106

[Close]

BLAST of Sed0000290 vs. ExPASy TrEMBL
Match: A0A6J1F636 (uncharacterized protein LOC111441170 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441170 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD YLFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKG 106

[Close]

BLAST of Sed0000290 vs. ExPASy TrEMBL
Match: A0A6J1HZC1 (uncharacterized protein LOC111468025 OS=Cucurbita maxima OX=3661 GN=LOC111468025 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 32  DCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVSPYPFNSFPSPRK------DI 91
           + GGG +KKR++K+R KKK IHKVIDYLLSD  LFAP++SP PFNS+ +PRK      DI
Sbjct: 9   ESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCNLFAPLISPSPFNSYRAPRKGSSFISDI 68

Query: 92  EIRERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQSFTG 124
           EIRER KD R  ++K+ DYLKSDCY+YA +V PQSF G
Sbjct: 69  EIRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFRG 106

[Close]

BLAST of Sed0000290 vs. ExPASy TrEMBL
Match: A0A5D3B7P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00120 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 30  GGDCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAP-IVSPYPF-NSFPSPRKDIEI 89
           GG  GGGI KKR+I KR+KKK IHKVIDYLLSD YLFAP ++SP P  NS  +P + IEI
Sbjct: 9   GGGGGGGIGKKRLI-KRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVTPTRGIEI 68

Query: 90  RERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQS 121
           R RTKD R LV+K +DYLKSDCY+YA +V P+S
Sbjct: 69  RGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS 100

[Close]

BLAST of Sed0000290 vs. ExPASy TrEMBL
Match: A0A1S3B9N8 (uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 30  GGDCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAP-IVSPYPF-NSFPSPRKDIEI 89
           GG  GGGI KKR+I KR+KKK IHKVIDYLLSD YLFAP ++SP P  NS  +P + IEI
Sbjct: 9   GGGGGGGIGKKRLI-KRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVTPTRGIEI 68

Query: 90  RERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQS 121
           R RTKD R LV+K +DYLKSDCY+YA +V P+S
Sbjct: 69  RGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS 100

[Close]

BLAST of Sed0000290 vs. ExPASy TrEMBL
Match: A0A1S3B9M0 (uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 30  GGDCGGGILKKRIIKKRNKKKTIHKVIDYLLSDSYLFAP-IVSPYPF-NSFPSPRKDIEI 89
           GG  GGGI KKR+I KR+KKK IHKVIDYLLSD YLFAP ++SP P  NS  +P + IEI
Sbjct: 9   GGGGGGGIGKKRLI-KRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVTPTRGIEI 68

Query: 90  RERTKDKRGLVEKIEDYLKSDCYLYAPMVEPQS 121
           R RTKD R LV+K +DYLKSDCY+YA +V P+S
Sbjct: 69  RGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS 100

[Close]

BLAST of Sed0000290 vs. TAIR 10
Match: AT5G57790.1 (unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 40  KRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVS-----------PYPFNSFPSPRKDIEIR 99
           ++ +K++  ++ +  ++ YL SD+YLFAP+ S           P P NS PS   DI + 
Sbjct: 12  RKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDISME 71

Query: 100 -------ERTKDKRGLVEKIEDYLKSDCYLYAPMV 117
                  E+   KR + EK+++YLKSDCY+Y+PM+
Sbjct: 72  GFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMI 106

[Close]

BLAST of Sed0000290 vs. TAIR 10
Match: AT5G57790.2 (unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 40  KRIIKKRNKKKTIHKVIDYLLSDSYLFAPIVS-----------PYPFNSFPSPRKDIEIR 99
           ++ +K++  ++ +  ++ YL SD+YLFAP+ S           P P NS PS   DI + 
Sbjct: 12  RKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDISME 71

Query: 100 -------ERTKDKRGLVEKIEDYLKSDCYLYAPMV 117
                  E+   KR + EK+++YLKSDCY+Y+PM+
Sbjct: 72  GFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMI 106

The following BLAST results are available for this feature:

BLAST of Sed0000290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933890.1	5.8e-27	64.29	uncharacterized protein LOC111441170 isoform X1 [Cucurbita moschata]	[more]
KAG7035711.1	5.8e-27	64.29	hypothetical protein SDJN02_02509, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587786.1	5.8e-27	64.29	hypothetical protein SDJN03_16351, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532011.1	1.7e-26	63.27	uncharacterized protein LOC111794104 [Cucurbita pepo subsp. pepo]	[more]
XP_022968868.1	6.4e-26	63.27	uncharacterized protein LOC111468025 [Cucurbita maxima]	[more]

BLAST of Sed0000290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0000290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F636	2.8e-27	64.29	uncharacterized protein LOC111441170 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HZC1	3.1e-26	63.27	uncharacterized protein LOC111468025 OS=Cucurbita maxima OX=3661 GN=LOC111468025...	[more]
A0A5D3B7P7	2.1e-22	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B9N8	2.1e-22	66.67	uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B9M0	2.1e-22	66.67	uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0000290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57790.1	3.7e-11	35.79	unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]
AT5G57790.2	3.7e-11	35.79	unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36811	OS08G0444440 PROTEIN	coord: 36..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000290.1	Sed0000290.1	mRNA