Sed0000209 (gene) Chayote v1

Overview


Name	Sed0000209
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription elongation factor 1 homolog
Location	LG04: 30492515 .. 30494866 (+)
RNA-Seq Expression	Sed0000209
Synteny	Sed0000209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTATAAATACCAACCCTTCCTTCTATTTTTTCTCATTCATCAATTCGACCAGCGAGACGATTACAACAGCGAACGATAAATCTCTCCCAATTCGATCGGCAATCAGGTACAATTTCTTTGTTCCCTCTTTTCTTAGGTTCGTAGTTTTAGGGTTTTATTATGATTTGAATTCGTTTTTTTCTTAATGCCTGCAACTTAGGGTTCTAATCGTTGTCGTATTCTGTGCCCGGCTTCCCGTTCTTACGCAAATTTCGACGTTCTTTGCGTTTTTTTGTTGCGGTTGCTTATTATTGGATTTGTATGTGTTTCCTTTCTTGGTGGATGGAATTGCTGGATATTGTACGTGAATTTGAGTAATTAGTGTCGTGGTGCTGCTCTTATTGAATTTGGGAGACGTTGATTGAGGAAGTTTTTTCTATTGCATCTATGACAATGATGGAATTTTTAGGGGTTTTTAGTTGTTATTTGATTTTGATTCTTTACACGGTCGATGTATTTCTCTGATTTTTGTAGGGATTTGAAATGTGCTTGTATATGTTTTTCTTAATTTCTGTCGTTCGTGTATTGAATATGAGTTTTTTTGGATGGATGGTGAATCTGGGTTATAATGTATGAGGATTGGTGGCTTATTGACTGTTTGATGTGTCCAAAAGTCCCTGACGGGTAGCACAATGGTTGAAGACTTTGGCTTTGAGAGTATGCTCTCCTCAAGGTCCCAGGTTCGAATCTCAGCTGTGACATTACTCCTTCGATGTCTCCTGGTGCCTGGCCTAGGGACGGGCGTGGTTATCCTTGTTTAAAAAAAAGATGTGTTTGAAAGATATAGTTTTTATATCCTTTCAAGTTGTATTACAACGTGCATTTTGATGACGATTTGATGGTGATATTGTTTATGTACGTGGACAGTTTTAACACAAGGAATGGGAAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGACAAGCTTGATACTGTTTTTAGCTGCCCTTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATGTAAGTTTGCATTTGGTTCCTTTTGGGGTTCGTAAGGGAGGGATGCATTTGAAAATTTGATACTATTGTGAGGCATAATGAAAAAGATGGAACAGTGAATATGTATAATATTGTTAACTTGTCTAGTGGATTAGCCTGTTTCTTGGTGCCTCATTTGTTTTGCTTTGTATGGTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTGCGATTTGCCAAGAAGGCTTTAGCATGGCCATTACAGGTTTTCTCTTCAATTCTCTTATTCTATGCGGTTCTTTGTTTTCACCATCTGTTGCGTATGTTTCGGTTTATTCTTTATATTATGATGTGATAGATGCAATTTAGTTTTTCTTGGAACTTTTTTAATGGACATTTGATGTCTACCTGAGCAGTTTTTATTTCGTCTGAACTCTAAATTGCCCCTTGGAAATCTTCTATAATGAACACCATTTTATCTTTGTACAAAATAGATGGATGCATGGAAGATTTCTTTTTTTACGTTGTTCCACTTTCCATCCTGACTTTGACTAGATTTCCTTCCCCCCTGTTGTAGGGAAGTTTAGTTTTTTTAGTACAACAACAATATTCGGAGGTCAGGTGTTCGAACTTGAGACTTCTTGGTTGATGATAGATGTCAATTAGTTTCTATGATTTAGTTTAATCCGTGTCTAACCCAGGGCTTGAAAATTATTTTCATGAGTCTGTTTGTGGACAAATTAAGTTACACTAAAGTCTAACATTTTCTTTCTCTTACTTTGCAGCCTTGACCGAGGCAATTGACGTGTAAGTAGTAAAGATTGAAAAGCAACTGGTTTTTGTTAATATTGATGCTCTTTAGTGCTTCATTGACATGATGTTCTTTTTGATCAGATATACCGAATGGATCGATGAATGCGAGCGGGTCAACAACCCTGAAGACGATGACGGTGCCTAAGTTTGATGCTTGCGATTTCGTTACGAGAAGAATCTGGCTGGTTGGAACTTGGAAGTTCCCTTTATGAATCTAAATTAAGAGAGGGGGTCTATTTGTAGGTGTAGCACTCTTACCCTCGTAGCAATACAGACGAGCATGCATGTACAGTAGTACGTTGTAACGGCTTGCACTTTGACTTAATTGCGGATTTTACGTACCCATCACTTTTATTCCTGACTTTTGAATCACTAATCTTTTGGACATGAGAAGTTGTATGTTGATGCCATTTTTTTTAAGTTTGTTTACTGTTGGATCATGAATCCCATTCCTTGCTGATTGAAGATGTTTTTTATTTTGTTTTTTGGGTTAGGTGGTTGAATTTTAGGCTTTCTAAT

mRNA sequence

CTTCTATAAATACCAACCCTTCCTTCTATTTTTTCTCATTCATCAATTCGACCAGCGAGACGATTACAACAGCGAACGATAAATCTCTCCCAATTCGATCGGCAATCAGTTTTAACACAAGGAATGGGAAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGACAAGCTTGATACTGTTTTTAGCTGCCCTTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTGCGATTTGCCAAGAAGGCTTTAGCATGGCCATTACAGCCTTGACCGAGGCAATTGACGTATATACCGAATGGATCGATGAATGCGAGCGGGTCAACAACCCTGAAGACGATGACGGTGCCTAAGTTTGATGCTTGCGATTTCGTTACGAGAAGAATCTGGCTGGTTGGAACTTGGAAGTTCCCTTTATGAATCTAAATTAAGAGAGGGGGTCTATTTGTAGGTGTAGCACTCTTACCCTCGTAGCAATACAGACGAGCATGCATGTACAGTAGTACGTTGTAACGGCTTGCACTTTGACTTAATTGCGGATTTTACGTACCCATCACTTTTATTCCTGACTTTTGAATCACTAATCTTTTGGACATGAGAAGTTGTATGTTGATGCCATTTTTTTTAAGTTTGTTTACTGTTGGATCATGAATCCCATTCCTTGCTGATTGAAGATGTTTTTTATTTTGTTTTTTGGGTTAGGTGGTTGAATTTTAGGCTTTCTAAT

Coding sequence (CDS)

ATGGGAAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGACAAGCTTGATACTGTTTTTAGCTGCCCTTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTGCGATTTGCCAAGAAGGCTTTAGCATGGCCATTACAGCCTTGACCGAGGCAATTGACGTATATACCGAATGGATCGATGAATGCGAGCGGGTCAACAACCCTGAAGACGATGACGGTGCCTAA

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAITALTEAIDVYTEWIDECERVNNPEDDDGA

Homology

[Close]

BLAST of Sed0000209 vs. NCBI nr
Match: XP_022943265.1 (transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022983534.1 transcription elongation factor 1 homolog [Cucurbita maxima] >XP_023511740.1 transcription elongation factor 1 homolog [Cucurbita pepo subsp. pepo] >KAG6600389.1 Transcription elongation factor 1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TAL+E ID+Y+EWIDECERVNNPEDD
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDD 86

[Close]

BLAST of Sed0000209 vs. NCBI nr
Match: XP_022922476.1 (transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022985169.1 transcription elongation factor 1 homolog [Cucurbita maxima] >XP_023551973.1 transcription elongation factor 1 homolog [Cucurbita pepo subsp. pepo] >KAG7015033.1 Transcription elongation factor 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDDGA 90
          TALTE ID+Y+EWIDECERVNNPE+DDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 89

[Close]

BLAST of Sed0000209 vs. NCBI nr
Match: XP_011082718.1 (transcription elongation factor 1 homolog [Sesamum indicum] >XP_011082720.1 transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDD 88
          TALTE ID+Y+EWIDECERVNNPEDDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDD 87

[Close]

BLAST of Sed0000209 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS  I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDDGA 90
          TALTE ID+Y+EWIDECERVNN E+DD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDDAA 89

[Close]

BLAST of Sed0000209 vs. NCBI nr
Match: KAF3442455.1 (hypothetical protein FNV43_RR16371 [Rhamnella rubrinervis])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FSMAI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSMAI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TALTE IDVY+EWIDECERVNN EDD
Sbjct: 61 TALTEPIDVYSEWIDECERVNNLEDD 86

[Close]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.1e-41
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDDGA 90
           ALTE ID+Y+EWIDECERVNN EDDDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-36
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FS  I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TALTEAID+Y+EWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMA 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALTEAIDVYTEWIDECERVN 82
          IT L+E +DVY++WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMA 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALTEAIDVYTEWIDECERVN 82
          IT L+E +DVY++WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot
Match: P60003 (Transcription elongation factor 1 homolog OS=Mus musculus OX=10090 GN=Elof1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMA 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F   
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALTEAIDVYTEWIDECERVN 82
          IT L+E +DVY++WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Sed0000209 vs. ExPASy TrEMBL
Match: A0A6J1J7P5 (Transcription elongation factor 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482102 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.8e-40
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TAL+E ID+Y+EWIDECERVNNPEDD
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDD 86

[Close]

BLAST of Sed0000209 vs. ExPASy TrEMBL
Match: A0A6J1FXL7 (Transcription elongation factor 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448047 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.8e-40
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQEGFS +I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TAL+E ID+Y+EWIDECERVNNPEDD
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDD 86

[Close]

BLAST of Sed0000209 vs. ExPASy TrEMBL
Match: A0A6J1JCJ5 (Transcription elongation factor 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483253 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.6e-40
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDDGA 90
          TALTE ID+Y+EWIDECERVNNPE+DDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 89

[Close]

BLAST of Sed0000209 vs. ExPASy TrEMBL
Match: A0A6J1E485 (Transcription elongation factor 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430475 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.6e-40
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDDGA 90
          TALTE ID+Y+EWIDECERVNNPE+DDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 89

[Close]

BLAST of Sed0000209 vs. ExPASy TrEMBL
Match: A0A6I9TIA1 (Transcription elongation factor 1 homolog OS=Sesamum indicum OX=4182 GN=LOC105165417 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.9e-40
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FS  +
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDDD 88
          TALTE ID+Y+EWIDECERVNNPEDDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDD 87

[Close]

BLAST of Sed0000209 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-37
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCAICQEGFSMAI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FS  I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEAIDVYTEWIDECERVNNPEDD 87
          TALTEAID+Y+EWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Sed0000209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943265.1	1.2e-39	91.86	transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022983534.1 t...	[more]
XP_022922476.1	1.6e-39	87.64	transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022985169.1 t...	[more]
XP_011082718.1	2.1e-39	90.80	transcription elongation factor 1 homolog [Sesamum indicum] >XP_011082720.1 tran...	[more]
XP_022142747.1	2.1e-39	89.89	transcription elongation factor 1 homolog [Momordica charantia]	[more]
KAF3442455.1	2.7e-39	94.19	hypothetical protein FNV43_RR16371 [Rhamnella rubrinervis]	[more]

BLAST of Sed0000209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	5.1e-41	86.52	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	3.8e-36	80.23	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
A4IFR3	1.2e-18	51.22	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	1.2e-18	51.22	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]
P60003	1.2e-18	51.22	Transcription elongation factor 1 homolog OS=Mus musculus OX=10090 GN=Elof1 PE=1...	[more]

BLAST of Sed0000209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7P5	5.8e-40	91.86	Transcription elongation factor 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FXL7	5.8e-40	91.86	Transcription elongation factor 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1JCJ5	7.6e-40	87.64	Transcription elongation factor 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E485	7.6e-40	87.64	Transcription elongation factor 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6I9TIA1	9.9e-40	90.80	Transcription elongation factor 1 homolog OS=Sesamum indicum OX=4182 GN=LOC10516...	[more]

BLAST of Sed0000209 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	2.7e-37	80.23	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 e-value: 2.4E-30 score: 104.4
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..89
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 16..82 e-value: 3.5E-28 score: 99.5
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0000209.1	Sed0000209.1	mRNA
Sed0000209.2	Sed0000209.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity