Sed0000190 (gene) Chayote v1

Overview
NameSed0000190
Typegene
OrganismSechium edule (Chayote v1)
DescriptionNADH-u_ox-rdase domain-containing protein
LocationLG01: 10465434 .. 10466157 (+)
RNA-Seq ExpressionSed0000190
SyntenySed0000190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTCAACCACAGCGAGTTTTTGCAGTCACACATCGATATAGAGAGAGAAAGAGAACCGGCGGAGATCAGCTTCAGTTTCGGCTCCGGCGAAATCAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTATCCAGTTGTAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTCGACGCTCTCGATTACCTCCGATTCGTCACCATCACCGGCGTCTCCGTCACCGTCGGTTATCTTTCTGGTATCAATTTCTTATCCCCTCTCTTTTTCCCTCTTCATCTTCCATTTCATTGCTAATCTGGAAATTTTGTTCTTTTTTTTTTGCGTTTTAGGGATTAAGCCCGGGATTAGAGGACCATCAATGGTGACCGGCGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAAGATTGTGCGTTTTAGGTTTTTTTTTTCTTTTGAAATTCGAGTTCTATTTGTGGACATGTTTACGATGTTCAACTTACTAAACGTGCGACTGGGTTGTGTCAATAAGCAAATTGAAACATCACTTTTTTCTGTGCTGCTCTTTTTCGTCAAAATGAAATAGTTGAAGACTTTACATGATTTTTGTGATTTTGATCAATAATTAAATGTGCCCATTAAAGGGGTTTTGAGAAA

mRNA sequence

GTCTTCAACCACAGCGAGTTTTTGCAGTCACACATCGATATAGAGAGAGAAAGAGAACCGGCGGAGATCAGCTTCAGTTTCGGCTCCGGCGAAATCAAGATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTATCCAGTTGTAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTCGACGCTCTCGATTACCTCCGATTCGTCACCATCACCGGCGTCTCCGTCACCGTCGGTTATCTTTCTGGGATTAAGCCCGGGATTAGAGGACCATCAATGGTGACCGGCGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAAGATTGTGCGTTTTAGGTTTTTTTTTTCTTTTGAAATTCGAGTTCTATTTGTGGACATGTTTACGATGTTCAACTTACTAAACGTGCGACTGGGTTGTGTCAATAAGCAAATTGAAACATCACTTTTTTCTGTGCTGCTCTTTTTCGTCAAAATGAAATAGTTGAAGACTTTACATGATTTTTGTGATTTTGATCAATAATTAAATGTGCCCATTAAAGGGGTTTTGAGAAA

Coding sequence (CDS)

ATGAACACCGACATTACAGCGTCGACCAAGCCAGAGTATCCAGTTGTAGATCGGAACCCTCCATTCACCAAAGTCGTCGGCAATTTCGACGCTCTCGATTACCTCCGATTCGTCACCATCACCGGCGTCTCCGTCACCGTCGGTTATCTTTCTGGGATTAAGCCCGGGATTAGAGGACCATCAATGGTGACCGGCGGTCTAATTGGGCTGATGGGAGGCTTCATGTACGCTTATCAGAACTCGGCCGGTCGGCTTATGGGGTTTTTCCCCAATGAAGGCGAGGTAGCTCGTTACAAGAAATAA

Protein sequence

MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Homology
[Close]
BLAST of Sed0000190 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo] >KAG6573532.1 hypothetical protein SDJN03_27419, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012647.1 hypothetical protein SDJN02_25399 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. NCBI nr
Match: XP_011654950.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVVDRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_038894012.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. NCBI nr
Match: KAG7019380.1 (hypothetical protein SDJN02_18341 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNE EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 100

[Close]
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match: A0A6J1HSH8 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661 GN=LOC111466374 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match: A0A6J1CN33 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111012637 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match: A0A6J1EHK1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111432598 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match: A0A0A0LT27 (NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181470 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVVDRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 46  MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 105

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVARYKK
Sbjct: 106 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 145

[Close]
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match: A0A6J1EGY7 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111434210 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFD LDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

[Close]
BLAST of Sed0000190 vs. TAIR 10
Match: AT4G16450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 180.3 bits (456), Expect = 7.9e-46
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPVVDRNP FTKVVGNF  LDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

[Close]
BLAST of Sed0000190 vs. TAIR 10
Match: AT4G16450.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 180.3 bits (456), Expect = 7.9e-46
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0 

Query: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDALDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPVVDRNP FTKVVGNF  LDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

The following BLAST results are available for this feature:
BLAST of Sed0000190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142552.11.2e-4898.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925... [more]
XP_022927362.12.1e-4897.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02... [more]
XP_011654950.12.1e-4898.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.... [more]
XP_008463609.12.7e-4897.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_03... [more]
KAG7019380.11.4e-4796.00hypothetical protein SDJN02_18341 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Sed0000190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0000190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HSH85.9e-4998.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1CN335.9e-4998.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 G... [more]
A0A6J1EHK15.9e-4998.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36... [more]
A0A0A0LT271.0e-4898.00NADH-u_ox-rdase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G18... [more]
A0A6J1EGY71.0e-4897.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36... [more]
BLAST of Sed0000190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16450.17.9e-4687.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
AT4G16450.27.9e-4687.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
e-value: 4.0E-20
score: 72.3
NoneNo IPR availablePANTHERPTHR34062:SF2NADH-UBIQUINONE OXIDOREDUCTASE 20.9 KDA SUBUNIT-LIKEcoord: 1..99
NoneNo IPR availablePANTHERPTHR34062OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATEDcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000190.1Sed0000190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I