Pay0022692 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022692
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	PSII 6.1 kDa protein
Location	chr01: 29371769 .. 29373398 (-)
RNA-Seq Expression	Pay0022692
Synteny	Pay0022692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAATCTGAAAATGGGACATTTGGGAAGTCCACGTAGGAGTAAACTATTGGATCCCAAAGGATGATAGAACACGTGTAAAAAGGTAATTGGCGGAAAGTAGATAAAGGATATGAAGGAAATGGTATGGTTGGCCACTCTCTCTCTATCTACCCTTTGTGTGGTACCACTCAAAACCCAACAAATAATATTAATTCTTTCCAAACCCTCCCTTTGATCTCCACTCTCCAAATTCCCAATTCCTTGTTCCTTTTTTCCTTTCAAAATTTGAAGACCAAACAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGTGAGTTCTTTTGTTTAATTTCTACTACTCTCAAATCCGCCTTTTGTTTTTCTTGTATTGAAGATTGGGTTGATGTGAGCCTTGCCTTTGGTTTTTACTTTTATTCTTTCTTTTTTTTCCATAGGTATGGAAGATCTTGAACATTCTTGGTCCTTATATATTCTTTGAACTATTTAGTTCTTAGATGGTTACTCAACAATGAAATGAGTATTTGAAATAACTAAAATCATTTTCTTTGAAGCTTGATTTTGATCATCTAAAATCAATTTTGATAATTTAAAGTAATTTATATTTTTAATATAACAAATGTGATTTTAGTTTATTAAAGATGTGTTTTAGCTAGTGTGATTAATTGGTATAGCTTTTTTGTGCTTAGATTCTCTTGGAGTCAAATTTGTAAAGAACAATTCCACTTTAATGGTTTAAATCAACATTATATTACAAAAATTACAAGGTAGCACTAAGGTTATAATCAGCAAAAAGTTAACTTCAATTCTTGTTTGATCTAACAAATATATTCATAAACTCACAAATGACGACTTATTCACTTCATACATAGTGGATTTTTAAATGCAACTACTTCATTTGCTGCAAACGTCATCTAAAGAGGTATATTTCAACATAGTTTGTATATGGTCATCTCTTTGATGTAGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTTGAAAACAAATCAAGCAACTTGGGGATGGGGGCGTCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAGCCAACATTTCCCCATCTTACTTACTATTATTAATTATTGCTACTTTTGTTATTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTGGAAGCTTTTGAATTCATATCATTCAAGCCTTTTGTTCGGGTATCAATGTAGAAAAAAGTAAATGTGGTTCATAACTCTTCGTTTTATTTCTCTGAATTTTTTTTAATATCGTCGAAGGAATTTATATGTTGTTTGATATCTGTTAAGTTTTTAAATCTAAGTTTATAAAACCCTTTTTTCGTTA

mRNA sequence

GCAAAATCTGAAAATGGGACATTTGGGAAGTCCACGTAGGAGTAAACTATTGGATCCCAAAGGATGATAGAACACGTGTAAAAAGGTAATTGGCGGAAAGTAGATAAAGGATATGAAGGAAATGGTATGGTTGGCCACTCTCTCTCTATCTACCCTTTGTGTGGTACCACTCAAAACCCAACAAATAATATTAATTCTTTCCAAACCCTCCCTTTGATCTCCACTCTCCAAATTCCCAATTCCTTGTTCCTTTTTTCCTTTCAAAATTTGAAGACCAAACAAATCTAATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTTGAAAACAAATCAAGCAACTTGGGGATGGGGGCGTCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAGCCAACATTTCCCCATCTTACTTACTATTATTAATTATTGCTACTTTTGTTATTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTGGAAGCTTTTGAATTCATATCATTCAAGCCTTTTGTTCGGGTATCAATGTAGAAAAAAGTAAATGTGGTTCATAACTCTTCGTTTTATTTCTCTGAATTTTTTTTAATATCGTCGAAGGAATTTATATGTTGTTTGATATCTGTTAAGTTTTTAAATCTAAGTTTATAAAACCCTTTTTTCGTTA

Coding sequence (CDS)

ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGCCGTCCGCACTTCTCTGGTCCAGAACCGCCCCGCTCTGCCGTCGGCTTCACCCGCCCCATTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAAGGAAATGGAGAAGTTGAAAACAAATCAAGCAACTTGGGGATGGGGGCGTCGTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTCTCATTTGGGCATTTTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

Protein sequence

MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Homology

[Close]

BLAST of Pay0022692 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.6e-36
Identity = 87/140 (62.14%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MAAVTSAAAAAV--RTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVEN 60
           MA +T++++A++  R SLV N     S+SP   +LGLP++ K+  V CS+E K +     
Sbjct: 1   MATITASSSASLVARASLVHNSRVGVSSSP---ILGLPSMTKRSKVTCSIENKPSTTETT 60

Query: 61  KSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIW 120
            ++N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW
Sbjct: 61  TTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIW 120

Query: 121 AFYIVYTSTLEEDEESGLSL 139
           A Y VY S LEEDEESGLSL
Sbjct: 121 ALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 8.7e-32
Identity = 87/142 (61.27%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 1   MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVE 60
           MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K     +
Sbjct: 1   MASFTASASTVSAARPALLL-KPTVAISAP---VLGLPPMGKKKGGVRCSMETK-----Q 60

Query: 61  NKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGL 120
              S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGL
Sbjct: 61  GNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGL 120

Query: 121 IWAFYIVYTSTLEEDEESGLSL 139
           IW F+ VYTS+LEEDEESGLSL
Sbjct: 121 IWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Pay0022692 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.2e-22
Identity = 71/137 (51.82%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVEN 60
           MA V++AAA +V    V   P           LGLP +  +    VRC+   +       
Sbjct: 1   MATVSAAAATSVVARAVLAGP-----------LGLPQMRARRSERVRCNYSKEA---ATP 60

Query: 61  KSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIW 120
            ++  G GASL+A A  A   +PAMALVDER+STEGTGL  GLSNNLLGWILLGVFGLIW
Sbjct: 61  AAAVKGAGASLLAMAATA---APAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIW 120

Query: 121 AFYIVYTSTLEEDEESG 136
           + Y +YTS LEEDEESG
Sbjct: 121 SLYTIYTSDLEEDEESG 120

[Close]

BLAST of Pay0022692 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA 
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 121 YIVYTSTLE--EDEESGLSL 139
           + +    L   ED + GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Pay0022692 vs. ExPASy TrEMBL
Match: A0A1S3BQI5 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Pay0022692 vs. ExPASy TrEMBL
Match: A0A5D3DRC0 (PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00650 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Pay0022692 vs. ExPASy TrEMBL
Match: A0A0A0K4V6 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. ExPASy TrEMBL
Match: A0A6J1GQI7 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.6e-58
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAA VR+SLVQNRP LP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKS
Sbjct: 1   MAAVTSAAAATVRSSLVQNRP-LPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           S LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFG IWAF
Sbjct: 61  STLGMGASLVAAAYAASMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YI+YTSTLEEDEESGLSL
Sbjct: 121 YIIYTSTLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. ExPASy TrEMBL
Match: A0A6J1H5C6 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAV SA+AAAVR+SLVQNRP LP+ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS
Sbjct: 1   MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
            NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFG IW F
Sbjct: 61  CNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. NCBI nr
Match: XP_008451280.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Pay0022692 vs. NCBI nr
Match: KAA0059706.1 (photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 photosystem II reaction center W protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF
Sbjct: 61  SNLEMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Pay0022692 vs. NCBI nr
Match: XP_004146953.1 (photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus] >KGN44755.1 hypothetical protein Csa_015975 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-61
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAAAA VRTSLVQNR  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. NCBI nr
Match: XP_038900227.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60
           MAAVTSAA A  RTSLVQNRP LP+ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS
Sbjct: 1   MAAVTSAAVATARTSLVQNRP-LPAASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS 60

Query: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAF 120
           SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVFGLIWAF
Sbjct: 61  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAF 120

Query: 121 YIVYTSTLEEDEESGLSL 139
           YIVYTSTLEEDEESGLSL
Sbjct: 121 YIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Pay0022692 vs. NCBI nr
Match: XP_031745255.1 (photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59
Identity = 134/146 (91.78%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MAAVTSAAAAAVRTSLVQNRPALPSASPAPFLL--------GLPALGKKGGVRCSMEGKG 60
           MAAVTSAAAA VRTSLVQNR  LPSASPAPFLL        GLPALGKKGGVRCSMEGKG
Sbjct: 1   MAAVTSAAAATVRTSLVQNR-LLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKG 60

Query: 61  NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLG 120
           NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLG
Sbjct: 61  NGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLG 120

Query: 121 VFGLIWAFYIVYTSTLEEDEESGLSL 139
           VF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 121 VFALIWAFYIVYTSTLEEDEESGLSL 145

[Close]

BLAST of Pay0022692 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 137.9 bits (346), Expect = 6.2e-33
Identity = 87/142 (61.27%), Postives = 106/142 (74.65%), Query Frame = 0


Query: 1   MAAVTSAAA--AAVRTSLVQNRPALPSASPAPFLLGLPALG-KKGGVRCSMEGKGNGEVE 60
           MA+ T++A+  +A R +L+  +P +  ++P   +LGLP +G KKGGVRCSME K     +
Sbjct: 1   MASFTASASTVSAARPALLL-KPTVAISAP---VLGLPPMGKKKGGVRCSMETK-----Q 60

Query: 61  NKSSNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGL 120
              S +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGLSNNLLGWIL GVFGL
Sbjct: 61  GNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGL 120

Query: 121 IWAFYIVYTSTLEEDEESGLSL 139
           IW F+ VYTS+LEEDEESGLSL
Sbjct: 121 IWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Pay0022692 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	7.6e-36	62.14	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	8.7e-32	61.27	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	8.2e-22	51.82	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	4.2e-10	41.25	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Pay0022692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQI5	1.6e-65	100.00	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1	[more]
A0A5D3DRC0	1.4e-64	99.28	PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A0A0K4V6	1.1e-61	97.10	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1	[more]
A0A6J1GQI7	5.6e-58	90.58	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1	[more]
A0A6J1H5C6	1.1e-56	89.13	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1	[more]

BLAST of Pay0022692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451280.1	3.4e-65	100.00	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
KAA0059706.1	2.9e-64	99.28	photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 ...	[more]
XP_004146953.1	2.3e-61	97.10	photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sati...	[more]
XP_038900227.1	3.0e-61	95.65	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_031745255.1	3.6e-59	91.78	photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sati...	[more]

BLAST of Pay0022692 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	6.2e-33	61.27	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 1..138 e-value: 1.1E-54 score: 184.0
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 5..138
None	No IPR available	PANTHER	PTHR34552:SF9	PHOTOSYSTEM II REACTION CENTER W	coord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022692.1	Pay0022692.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast