Pay0022541 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022541
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Signal peptidase complex-like protein DTM1
Location	chr04: 2210575 .. 2212030 (+)
RNA-Seq Expression	Pay0022541
Synteny	Pay0022541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTGTTATACTTATCACTGATAATATATTTTAGAATTTAAATTAAATTCTAAGAGAAAAAAAAAAGTGGGAAATGGCCATTAAAGATTCAGATCACAGTTGAACACGAGAAGAAACAATCGAGAAAGAGCTATCAAATAAATGCAATAATAATTAGCTAAGCGGCAAACCCTAGACCATGGCCTACACGCTCTCTAATCTGCTGCAATGGCCGTCGCTTCTTCCATCATTCTCTCATTTTCTTTATCCAATTTCTAATCTAGATCCATGGCCAACGACGCCGCACTCAACTCCTCTCTGGTAATTTTGGCCCTCGCCATCGTTCTCGTCGGAATCACCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCCTACCGGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCAGCTTCAAAGGTCGGTTAATTATATGTACCTTTACTTTCTTCTCTTCTCTTCTCTTCTCTTCTTCGTGTTCCTTTCGTTTGATTGATGAAAAAATTGAGAAAATTAAGAAAAATAATTGCAAAAAGTTACTTCCATTTATATCTTAAAACTTTCTATTTTAGAAATCGAGCCCTCCAACTAATTGTAACTAAGGACGTCAATTTGCTAACCTCTTTTGGAAATCGTTGTGAGTTTTGAATTGTACAATTTTAACGCTATAAAATTTTAGAAATTCTGCTAAAATTAAAATTATAAAAATTACAAAAATAGAAAAATCGACAAAATATCTGAAAATTTTTCTATCCATCATAATTTAAACTTTTAGAAAAATAAAAATTTATTTTTGGTCACATGTTTAAATTACATAACTAGGGAAGTACAACAACTAAGTCTAGTGGACTACCGAAGTATTACAAATTTCCTAAGGTTATACCTATTCAAAAATTGAGAAAAAAAAGTTTATTTTTTTTGTTTAAATTGGGTACAAATTTAACTAAAATTATAAACTTAAAATTTTTGAAGAGTAAATATAATTAATTTGTAAAAAAGAATAGATAAATTTACGTAGATTTTCTAATTTTTGTTTGTTGGAATTCTTTTTGCAGGTTTAGGATTTATCCAATGAGAGTAATTGTGTACGGCATAGTGTACAGTATTGCTTTGTACAAGTGGTGGCAATACGTGACCAGCTAATTTTTTTCTTTTTTTTTTTTAAAGGTTAAGATATAATTGTTTTTTTTTTCTTTTTGAAGAAGTTAAAATATAATTTTGTTCCATGTTTTAGTTTTTTTTCAATTTTTTTACTTTTAAAATTTTTAAATTTATTCCTTTAGACTTATAAATTTATCTTTATAATTATATGTTTTAATGTTTTTTTTTTCGCTTCACTTAAAGCAAGCTGCCTTAGCAAGC

mRNA sequence

CAGACTGTTATACTTATCACTGATAATATATTTTAGAATTTAAATTAAATTCTAAGAGAAAAAAAAAAGTGGGAAATGGCCATTAAAGATTCAGATCACAGTTGAACACGAGAAGAAACAATCGAGAAAGAGCTATCAAATAAATGCAATAATAATTAGCTAAGCGGCAAACCCTAGACCATGGCCTACACGCTCTCTAATCTGCTGCAATGGCCGTCGCTTCTTCCATCATTCTCTCATTTTCTTTATCCAATTTCTAATCTAGATCCATGGCCAACGACGCCGCACTCAACTCCTCTCTGGTAATTTTGGCCCTCGCCATCGTTCTCGTCGGAATCACCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCCTACCGGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCAGCTTCAAAGGTTTAGGATTTATCCAATGAGAGTAATTGTGTACGGCATAGTGTACAGTATTGCTTTGTACAAGTGGTGGCAATACGTGACCAGCTAATTTTTTTCTTTTTTTTTTTTAAAGGTTAAGATATAATTGTTTTTTTTTTCTTTTTGAAGAAGTTAAAATATAATTTTGTTCCATGTTTTAGTTTTTTTTCAATTTTTTTACTTTTAAAATTTTTAAATTTATTCCTTTAGACTTATAAATTTATCTTTATAATTATATGTTTTAATGTTTTTTTTTTCGCTTCACTTAAAGCAAGCTGCCTTAGCAAGC

Coding sequence (CDS)

ATGGCCAACGACGCCGCACTCAACTCCTCTCTGGTAATTTTGGCCCTCGCCATCGTTCTCGTCGGAATCACCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCCTACCGGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCAGCTTCAAAGGTTTAGGATTTATCCAATGAGAGTAATTGTGTACGGCATAGTGTACAGTATTGCTTTGTACAAGTGGTGGCAATACGTGACCAGCTAA

Protein sequence

MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRWTSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS

Homology

[Close]

BLAST of Pay0022541 vs. ExPASy Swiss-Prot
Match: Q7XI45 (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-21
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M  D  L  SLV LA A+V+ G+ T S +K A TY  G+ AIAGVLLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  TSPVTEEERESYRNATGSQ--LQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
            +P+    R +   A   +  + +F+ YP+R+ +   +Y   LYKWW YV+S
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

[Close]

BLAST of Pay0022541 vs. ExPASy TrEMBL
Match: A0A5A7TAS9 (Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006230 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of Pay0022541 vs. ExPASy TrEMBL
Match: A0A1S3CQR6 (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of Pay0022541 vs. ExPASy TrEMBL
Match: A0A0A0LGU6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of Pay0022541 vs. ExPASy TrEMBL
Match: A0A6J1FJI2 (signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446307 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
            SPVTEEERESYR +T S+  RFRIYP+R++VY IVYS+ALYKWW++V++
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Pay0022541 vs. ExPASy TrEMBL
Match: A0A6J1DGG6 (signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC111020250 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA  +V+VGI T+SF  MAVTY VGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVVVGIATHSFTNMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVT EERES R +TGSQL+RFRIYP+R+IVY IVYS ALYKWW++++S
Sbjct: 61  TSPVTAEERESDRISTGSQLRRFRIYPIRLIVYTIVYSFALYKWWKFISS 110

[Close]

BLAST of Pay0022541 vs. NCBI nr
Match: XP_008466235.1 (PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo] >KAA0038711.1 signal peptidase complex-like protein DTM1 [Cucumis melo var. makuwa] >TYK31323.1 signal peptidase complex-like protein DTM1 [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 5.3e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of Pay0022541 vs. NCBI nr
Match: XP_004136292.1 (signal peptidase complex-like protein DTM1 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of Pay0022541 vs. NCBI nr
Match: XP_038899258.1 (signal peptidase complex-like protein DTM1 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLV LA  +VLVGITTYSFKKM VTYFVG FAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVFLAAVVVLVGITTYSFKKMVVTYFVGAFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
           TSPVTEEERESYR +TGS+ +RFRIYP+R++VYG VYS+ALYKWWQYV+S
Sbjct: 61  TSPVTEEERESYRISTGSRFRRFRIYPIRLVVYGTVYSVALYKWWQYVSS 110

[Close]

BLAST of Pay0022541 vs. NCBI nr
Match: KAG7037595.1 (Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.1 bits (440), Expect = 6.7e-40
Identity = 85/110 (77.27%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
            SPVTEEERESYR +T S+  RFRIYP+R+ VY IVYS+ALYKWW++V++
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Pay0022541 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40
Identity = 84/110 (76.36%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
            SPVTEEERESYR +T S+  RFRIYP+R++VY IVYS+ALYKWW++V++
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

[Close]

BLAST of Pay0022541 vs. TAIR 10
Match: AT1G34640.1 (peptidases )

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-27
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M N+AAL SS+V LA+ +V+V + T S KK  VTY VG+  I G+LLPDW FFDR FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 111
             PVT EER S   A  S   RFR+YPMR+++YG VY  A+Y+WW +V++
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVSN 109

The following BLAST results are available for this feature:

BLAST of Pay0022541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XI45	9.4e-21	45.54	Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Pay0022541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAS9	2.6e-53	100.00	Signal peptidase complex-like protein DTM1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQR6	2.6e-53	100.00	uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=...	[more]
A0A0A0LGU6	1.3e-49	91.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=3 SV=1	[more]
A0A6J1FJI2	4.2e-40	76.36	signal peptidase complex-like protein DTM1 isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1DGG6	2.1e-39	77.27	signal peptidase complex-like protein DTM1 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Pay0022541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466235.1	5.3e-53	100.00	PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo] >KAA0038711.1 sig...	[more]
XP_004136292.1	2.7e-49	91.82	signal peptidase complex-like protein DTM1 [Cucumis sativus]	[more]
XP_038899258.1	1.4e-45	84.55	signal peptidase complex-like protein DTM1 [Benincasa hispida]	[more]
KAG7037595.1	6.7e-40	77.27	Signal peptidase complex-like protein DTM1 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940831.1	8.7e-40	76.36	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata]	[more]

BLAST of Pay0022541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34640.1	4.1e-27	55.45	peptidases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Signal peptidase complex subunit Spc1/SPCS1	PFAM	PF06645	SPC12	coord: 8..63 e-value: 4.8E-7 score: 29.8
IPR039955	Signal peptidase complex-like protein DTM1	PANTHER	PTHR38354	SIGNAL PEPTIDASE COMPLEX-LIKE PROTEIN DTM1	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022541.1	Pay0022541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048658	anther wall tapetum development
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0005789	endoplasmic reticulum membrane