Pay0022440 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022440
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	50S ribosomal protein L23
Location	chr07: 15943912 .. 15945689 (+)
RNA-Seq Expression	Pay0022440
Synteny	Pay0022440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGACCTAACAATCCCAGCACTGCACCTCGCCGTTCGGTCCCAAATCCCTTCAGTTCGTTGAAAGCTTGCAAGTACAAATCTACTATTCTCAGGTTTCATTCCATTGTGAACCTCCCGTGTTTCAAGTAACTGTTTAGATCTTGGTTTCTTGTTCTTGTTGGGTTTGATTTGATGTTGTTTCAAGCAGATTGGAGTTAGAATTTGTAATTGGGTTTTCAAAGGATCTGTTCATCGGCTGTTCATTCGACGCGGAAGCCAAGAAATCCAGGAACATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACAGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCTCAGTTACTTCCTAATTGTCATTTGGTTTGGATTTTGTTTTCCTCTAAATGATAATAGTGCATTAGGTTGGTGATGGCTTTGAGCTTACTGATAAATGTTTATTTTCTAACTATGAAATGAACTTCTTGGCCCTCCTATGGGATTTTTTTCTGGAGGAAGTTCTGTTTTGTTGATTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTTCCCTTGTATTATGTGAATTCTACTTAGATAATTTCAGTATGTGGAGTAGGTTCACTATCAAATATTCGATGGCAATATTGTGGTTATAGTGAATTTGCACATGAAACCACATGCACTATGAAAAACTTAATGCGTAGAGATTTTGTATATTTTATCAAATAATTTACTTAATGCATAGAGATTTATATATTTTATCAAATAATTTTTCGTTTTTTTACTGCAGAGAGTGTTTGTAGCTATTGTCGTTTGTCTGCCTTAGGACTTTTCAGGCAAAAAAGAAACAAAACCCATTTTTCTAAATGTTTGTAGCTGGTTAGAGGTAATCTCTTGGAAATGAAAAGTATATAGTCTGCATCCTGCAAGATGAGCAATACAAAAGACTTGGAGTTGTAACTCTATACACCTACGTGACAATCATGCACAAGTGAAGTAGAGTAGTAAATTCTTTGAATCCTTTATCTTTTTGAGGAATCTGATATTCCTATACTTCAGGTCATTGATAATCTACGTCTTAAGCTCATTCGAGAACTAGTCCGGCTGGGTCTCAGATGGGCAGGTTCATCTCCATCAACTCTTGTGTGAAAGGAATTCTTTATCTTCATCCAACCAAATCCCCAACCTGCTACATTCTTTTGCTTGTTGCTTATTTTTTCATACTCTTGTTGTAGCTCTGAGTAGTCACTCTGCAACTCTGCCATTTGTGCCTTCACGCTCTCAAGTTCTGTCTTGAGGTTTTTAATTT

mRNA sequence

ACAAGACCTAACAATCCCAGCACTGCACCTCGCCGTTCGGTCCCAAATCCCTTCAGTTCGTTGAAAGCTTGCAAGTACAAATCTACTATTCTCAGATTGGAGTTAGAATTTGTAATTGGGTTTTCAAAGGATCTGTTCATCGGCTGTTCATTCGACGCGGAAGCCAAGAAATCCAGGAACATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACAGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGGTAGTGTGAAGAAACGTATCTCAGTTACTTCCTAATTGTCATTTGGTTTGGATTTTGTTTTCCTCTAAATGATAATAGTGCATTAGGTTGGTGATGGCTTTGAGCTTACTGATAAATGTTTATTTTCTAACTATGAAATGAACTTCTTGGCCCTCCTATGGGATTTTTTTCTGGAGGAAGTTCTGTTTTGTTGATTGAATCAATAAATAAATTAGAGTTGCATTTGTATTATTTCCCTTGTATTATGTGAATTCTACTTAGATAATTTCAGTATGTGGAGTAGGTTCACTATCAAATATTCGATGGCAATATTGTGGTTATAGTGAATTTGCACATGAAACCACATGCACTATGAAAAACTTAATGCGTAGAGATTTTGTATATTTTATCAAATAATTTACTTAATGCATAGAGATTTATATATTTTATCAAATAATTTTTCGTTTTTTTACTGCAGAGAGTGTTTGTAGCTATTGTCGTTTGTCTGCCTTAGGACTTTTCAGGCAAAAAAGAAACAAAACCCATTTTTCTAAATGTTTGTAGCTGGTTAGAGGTAATCTCTTGGAAATGAAAAGTATATAGTCTGCATCCTGCAAGATGAGCAATACAAAAGACTTGGAGTTGTAACTCTATACACCTACGTGACAATCATGCACAAGTGAAGTAGAGTAGTAAATTCTTTGAATCCTTTATCTTTTTGAGGAATCTGATATTCCTATACTTCAGGTCATTGATAATCTACGTCTTAAGCTCATTCGAGAACTAGTCCGGCTGGGTCTCAGATGGGCAGGTTCATCTCCATCAACTCTTGTGTGAAAGGAATTCTTTATCTTCATCCAACCAAATCCCCAACCTGCTACATTCTTTTGCTTGTTGCTTATTTTTTCATACTCTTGTTGTAGCTCTGAGTAGTCACTCTGCAACTCTGCCATTTGTGCCTTCACGCTCTCAAGTTCTGTCTTGAGGTTTTTAATTT

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCTAAAATTGAAATCAAGCGCGTCCTTGAGAGCCTTTACGGCTTTCAGGTCGATAAAGTTCGAACTCTTAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGATTTTGATCGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGAAATCCTTTGTCAATCTCTCAGGACATGTACCCGATCCGCATTATAGAGGAGGATAAGAGGAATATGAACAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCAAAGAGGCATTGGCTGCATGAGAAAGAGCCTGTGGGAATCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAATTGGCGGCGGCGCTGAAACAGTTGAGCCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR

Homology

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BLAST of Pay0022440 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-07
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

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BLAST of Pay0022440 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

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BLAST of Pay0022440 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G +   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

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BLAST of Pay0022440 vs. ExPASy Swiss-Prot
Match: A1WVC0 (50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTL 89
          ++  +  P A+K EIK  +E L+  QV  VRT+N +GK+K+ G I   + D+KKAYVTL
Sbjct: 28 QVVFQVAPDANKKEIKAAVEKLFDVQVTGVRTVNAKGKRKRFGMIRGRRRDWKKAYVTL 86

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BLAST of Pay0022440 vs. ExPASy Swiss-Prot
Match: P55839 (50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPDYKKAYVTLRN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 29 IVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88

Query: 91 PLSI 95
            S+
Sbjct: 89 GQSL 92

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BLAST of Pay0022440 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 4.9e-91
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Pay0022440 vs. ExPASy TrEMBL
Match: A0A1S3C191 (uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 4.9e-91
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Pay0022440 vs. ExPASy TrEMBL
Match: A0A5A7UFX6 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00630 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGFQVDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTTPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Pay0022440 vs. ExPASy TrEMBL
Match: A0A1S4E0P8 (uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.9e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 174
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 173

[Close]

BLAST of Pay0022440 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Pay0022440 vs. NCBI nr
Match: TYK15876.1 (Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Pay0022440 vs. NCBI nr
Match: XP_008455593.1 (PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Pay0022440 vs. NCBI nr
Match: KAA0053397.1 (Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKT PSASKIEIKRVLESLYGFQVDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTTPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of Pay0022440 vs. NCBI nr
Match: XP_016901794.1 (PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 3.8e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 174
           EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 173

[Close]

BLAST of Pay0022440 vs. NCBI nr
Match: XP_004137193.1 (uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical protein Csa_014646 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSIS DMYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 175
           EEGEAK+HWLHEKEPVGIKTYKGFADRGRRR GGGAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

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BLAST of Pay0022440 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-53
Identity = 114/175 (65.14%), Postives = 130/175 (74.29%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 60
           MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAK DYKKAYVTLR+PLSIS+D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVGIKTY-KGFADRGRRRIGG---GAETVEPSTKFPWSSMR 172
           EE + K HWL  KE   I  Y KG   RG  R      G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of Pay0022440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	9.4e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
Q0I161	1.6e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
Q0ABH3	2.7e-06	44.07	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]
A1WVC0	2.7e-06	45.76	50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=...	[more]
P55839	3.6e-06	42.19	50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rpl...	[more]

BLAST of Pay0022440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZJ7	4.9e-91	100.00	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C191	4.9e-91	100.00	uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UFX6	1.9e-90	99.43	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S4E0P8	1.9e-90	100.00	uncharacterized protein LOC103495731 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L0J2	1.7e-88	97.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]

BLAST of Pay0022440 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15876.1	1.0e-90	100.00	Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]	[more]
XP_008455593.1	1.0e-90	100.00	PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]	[more]
KAA0053397.1	3.8e-90	99.43	Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]	[more]
XP_016901794.1	3.8e-90	100.00	PREDICTED: uncharacterized protein LOC103495731 isoform X2 [Cucumis melo]	[more]
XP_004137193.1	3.6e-88	97.13	uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical ...	[more]

BLAST of Pay0022440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	1.0e-53	65.14	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..138 e-value: 2.3E-23 score: 85.0
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..90 e-value: 1.1E-15 score: 57.7
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..174
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..173
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022440.3	Pay0022440.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:1903857	negative regulation of cytokinin dehydrogenase activity
biological_process	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process
biological_process	GO:0010584	pollen exine formation
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0015789	UDP-N-acetylgalactosamine transmembrane transport
biological_process	GO:1990569	UDP-N-acetylglucosamine transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005463	UDP-N-acetylgalactosamine transmembrane transporter activity