Pay0022172 (gene) Melon (Payzawat) v1

Overview
NamePay0022172
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionUnknown protein
Locationchr01: 28487465 .. 28490074 (-)
RNA-Seq ExpressionPay0022172
SyntenyPay0022172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGACTTGCTTCCAAGGTTTCCCGTCCAAGAGCGTTAACGCTGTTAATATAACACTTATTGGTAGACTCATTAGGGGCTAATGACTCAGATTTCTAATCAAGTACAAGAAGAAATGAAACATTGTTTTATGGACTCGGTGGGTATACACTTCTATTTCTTCTCTGTTCCACTTCTTAGTATTGTAGAATTGTAGATTGCTTGCCTTTATAGATCCTTTCACTTTGACTTTTTGATATGCGTTATTGGGATTTCAGGAGGATCATCTTCATCAGTAGCACATTAGCCTGCATGGAACAAATAAGTATGTTCTCTTAGTCATTGAATCTATCTTTATATTCTTCACTCTTCATTGTTTGTCTGATTTAGTTTACTGAACCAGTGATTGATTGTTGATGTAATCAAATGCACAATTTGACACTCATTGCATCCAAATTCAAGTATAAGAAAACAAGATAGTGTTAGAAGATCATCGAAGTTATGAGAACCATGATAACTATTAGATTGAGGATTATTGTTATATTCTATTAAAATTAAGGGAATGTTTGTAGCAAAGACTAGAGTTGTCATGAGGCCCCAATATAAGGATTTAATACGACATGCAATAGATGTTTTCTAATTGTGGGCACATGAACTTTTTGGCAAGAGTGGAGTTAGCAACTCTTCTTAGGTTGACCGAGTTTCACTGATTCAAATGACCTATAAGAATTACCATTTTAGAATGATACACACGTGTGAGTTTTCAATGTAAGAAAGGGGGATGTATCTTTGGAAGAGGATTTGCTTTGATTATTTCCCCTATTTGGAGTGCCTTTTGGCCCAATTGTATAATATTTTAAATTAAATTATTGCCAACATGAAATTTGAGATATGCACTTGCCACAAATAGGATCCCTTTCTTCCACGCCGCCAAGCTCCTAAGGTTTTTCTCACAAATAGAATACCAAAAGGACAAAGTTCTCAGATTGTCCCCAGAGGAAGCTTGAGGTAGTAAGTAGGGAAGGAGCCAACCTCACAATCAAACACCTTCTCCCACCTCTGCAACTTAACATGATCAGCATTAATTCCAAAAATGGTGTACTTGCTCCTATGCATTAATTCCAAAAATGGTGTACTTGCTCCTATTGATTTAGGCTAGACATATCTTCGAAGAAAGCCACCATATGGTTGAGCATGAGGAAGGACTCCCCTTTTCCATCCACAAATTAAAGGTGCGATAAGGCAACTCCATTCCTTCCAATCTCCATGTTGTTTCATTTTTAGGATCACTGGTTATATTCTATGAAGTGGATTAGATTACATGACAGATTCTGGTTGGTTGTACTAAAAAGATATATTAATGGTGTTATATACTTTTACTTTTTTTTTCCTCTTTAATATTTGGGTTTAACACTTACTATTTTGTGACCGGTAGTACTTACTGTTAGACCTCCAACCTTCATACTTATAAAAGATGGGCAAGAAGGGGAATTCACAGAAGGATTCAGCTAGGGTGCTCATTGGAGAGGGAGAACACCTGAGGACCCCACCATATCACTAATATAAAAGGGAATGTTTTGGGATTGCTTAGGTTTCATTTTTGGTAAAAAGCTGCTGAGAGCTTTTAGGGAGAGGTTGCCAGCCTTCTCGAAGGAGCTGGATTGTTTCTTTTACTGATATTGTGTTGTTCTCTTTATGCTTTCTTCTTACTTTAATATTAGCTTGTGGAAATTTTTTTTGGATTATTATTCAAGGATTTTTTGAGTTTCAGGTCGGAGACTCCTAACACTTACCTCATGGGTGGACTTGGGTAGTGAGAGCCATGTTCTGATGGTAGTGAGAGCCATGTTCTGATAATATTGTTCATATTATCATATTAATCAAAATCTTGTTTCTGTGAGGAGCTGATGTTCTTGTTTTTTTTTTAACCAAAATATTTGTGCTTATCTATTGCTAACTTAGTCATGTTTGCCTGAAATCAGGACAGATGGGAACAGCCTCTGTACAATGTCTGACAAACAGTAATTCCAGTTTCATTCATCTAGTTTCAAGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAGAAATTCTGAAAGTCGTCCTTGATGATGTCATTAGCCTCAAACTCTACTTCAGATGAGTTATTTTATACTGAATGTGAGTCTCTGGATGCAGCTGTATATGAGGCTCGAGAATTCATCGAAAAATGGCATCTGAAGACAGAAAAATTTGCAGTGTGAGTTACCTTGAGAATTAGCCTTCTTATATTCCAGCTCTTTTTCAGATTTTATTTTATATTTCTTTTTCCTTTTTCTAAATAACTAAGTTGTTTGTACTTCGGATACAAGTCCCTTTTCATTTCTATCAATGAAAAGCCTTGTTTCCATTTCAAAAAGAAATTAATAATAGTATTAACTAAGCTGTTTGGAGTTGGAAACACAGCGCTTAAACTTTTTCTCTTATTTTGAAATAAAAGTTCTCTTGATTTTGATACATCTTTTCTCATAGTTTTCTGCTTATTTGATAAGAATGATATTGACATGTAATGAACTGTCCAGAAATGTCTTAAAGGCTTTCAATCATGGAAGCAAGGAAGGATAG

mRNA sequence

ATGTCTAGACTTGCTTCCAAGGTTTCCCGTCCAAGAGCGTTAACGCTGAGGATCATCTTCATCAGTAGCACATTAGCCTGCATGGAACAAATAAGTCGGAGACTCCTAACACTTACCTCATGGGTGGACTTGGGTAGTGAGAGCCATGTTCTGATGTTTTCTGCTTATTTGATAAGAATGATATTGACATGTAATGAACTGTCCAGAAATGTCTTAAAGGCTTTCAATCATGGAAGCAAGGAAGGATAG

Coding sequence (CDS)

ATGTCTAGACTTGCTTCCAAGGTTTCCCGTCCAAGAGCGTTAACGCTGAGGATCATCTTCATCAGTAGCACATTAGCCTGCATGGAACAAATAAGTCGGAGACTCCTAACACTTACCTCATGGGTGGACTTGGGTAGTGAGAGCCATGTTCTGATGTTTTCTGCTTATTTGATAAGAATGATATTGACATGTAATGAACTGTCCAGAAATGTCTTAAAGGCTTTCAATCATGGAAGCAAGGAAGGATAG

Protein sequence

MSRLASKVSRPRALTLRIIFISSTLACMEQISRRLLTLTSWVDLGSESHVLMFSAYLIRMILTCNELSRNVLKAFNHGSKEG
Homology
[Close]
BLAST of Pay0022172 vs. ExPASy TrEMBL
Match: A0A0A0K5F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 14  LTLRIIFISSTLACMEQISRRLLTLTSWVDLGSESHVLM 53
           L  RIIFI+STLACMEQIS RLLTLTSWVDLGSESHVLM
Sbjct: 211 LPRRIIFINSTLACMEQISWRLLTLTSWVDLGSESHVLM 249

[Close]
BLAST of Pay0022172 vs. NCBI nr
Match: XP_011659249.2 (uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 17  RIIFISSTLACMEQISRRLLTLTSWVDLGSESHVLMFSAYLIRMILTCNELSRNVLKAFN 76
           RIIFI+STLACMEQIS RLLTLTSWVDLGSESHVLM     ++ ++  N +SR +     
Sbjct: 69  RIIFINSTLACMEQISWRLLTLTSWVDLGSESHVLMMGTASVQCLI--NSISRFIHLVSC 128

Query: 77  HGSK 81
           H +K
Sbjct: 129 HTTK 130

[Close]
BLAST of Pay0022172 vs. NCBI nr
Match: XP_011659248.2 (uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 17  RIIFISSTLACMEQISRRLLTLTSWVDLGSESHVLMFSAYLIRMILTC--NELSRNVLKA 76
           RIIFI+STLACMEQIS RLLTLTSWVDLGSESHVLM    +    + C  N +SR +   
Sbjct: 69  RIIFINSTLACMEQISWRLLTLTSWVDLGSESHVLMVKEMMGTASVQCLINSISRFIHLV 128

Query: 77  FNHGSK 81
             H +K
Sbjct: 129 SCHTTK 134

The following BLAST results are available for this feature:
BLAST of Pay0022172 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0022172 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5F67.1e-0889.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374710 PE=4 SV=1[more]
BLAST of Pay0022172 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659249.21.0e-0860.94uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus][more]
XP_011659248.22.3e-0860.61uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus][more]
BLAST of Pay0022172 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0022172.1Pay0022172.1mRNA