Pay0022122 (gene) Melon (Payzawat) v1

Overview


Name	Pay0022122
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr06: 26880484 .. 26882401 (-)
RNA-Seq Expression	Pay0022122
Synteny	Pay0022122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTGTGAAGGAGAATGATCCATCTACTAATTGGGAAACCAGTTTGGAAAGAGTCGAAAAAAAGTTCAATATAGAGGATCACAACAACGATCAAAACAAGTTTAAAAAGATTGAGATGCTGGTCTTCAATGGCGAGGATCTTGATTCATGGTTAATTCGTGCAGAAAGATATTTTTAAATTCACAAACTTAGTGAGTCTGAAAAAATGGTAGTGTCGACCATTAGTTTTGAAAGTCCAGATCTTAATTGGTATTGTTCACAAGAAGAGAGAAATAAATTTTTAGGCTAGGCAGATTTAAAGGGAAGGCTATTAGTGCGTTTTCGATCTGTGAGAGAAGGTTCAATATGTGGGAGATCTTCGAATTAAGCAAGAGACCACTGTCAAAGAGTATAGAAACCTGTTTGATAAAATGGTAGCACCTTTGTCTAATCTTCAGGAATGAGTAATCAAAGAGAAATTTATGAACGGACTAATTCCGTGGATAAAGGCCGAAGTAGAATTTTGTAGACCAAAAGGAATAGTCGAAATGATGCTACTTGCTTAATTAATTGAAAATAGAGAAATCATAAGGAGAGAAGCCAATTTGAATGGATACGTGGCTGGAAAATACCCACTAATTTCTACCAAAAATTCAAAAAATACTGGAAATGCCTATATATCTAAAAACAAGGGAAATACCACATTTCCTATAAGGACGATTACATTAAGAGGATCAAATACTAATGAACCAAGGAAGGAAGGAACATTTAAAAGACTCCCTCATATGGAGTTCCAAGCTTGGAAAGAGAAAGGCCTGTGTTTTAAATGCATCTAAAAATATTCAGCAGATCACTAATGCAAGATGAGAGACCAAAGGAAATTACACATGTTTGTAGTGACTGAGAACGATGAGGAATTTTAAATCATTGAAGAAGAAGAGACCGAAAGAAAAGAATTGAATAGTGTAGAAGTCAAAGGGATTGGCACGACTTTTATAGAATTATCTATCAACTCTGTGGTAGGATTAAACGATCTAGGGACCATGAAGAGAGGAAAAAATTACAGAATGAAGAGGTTATTGTGCTAATTTATTGTAGGGACACTCACAATTTCATTTTTGAAAAATTAGTGAAGCTTCTACAGTTATAAACAAAAGAAACTCCTCATTACGGAGTTATACTAGGGTCTGCAAAATTAGTCCAAGGGAAAGGAGTTTGCGAAGGCATAGAGGTTCAGTTAGAAGAATGGACAATAAAAGATGGATTTCTTCCATTAGAACTTGGAGGTGTGGACATCATCCTTGGTATGCAGTGGCTGTACTCCCTAGGAGTAATTGAAGTAGATTGGAAAAATTTACTCCTAACATTCCAGCACCAAGGCAAGAGAGTGAGAATCAAAGGAAATCCAAGTCCCACTAAGTCTTGAGTAATCCTTAAAAATATGATAAAGATTTAGGGTTGGATGACCAAGGTTTTTTGGTATAATGTAGATCAATTGAATTGATGGAAATGTCAGTTGCTCAATCAAACAGAGAAGAGAATATATGAAGTATGGAAGAATCAGTAAAAACAATGCTAGATAACTTTTCAGATGTGTTTGAATGGCCTAAAAAGTTACGTCTAAATAGAAGTATTGAACATCACATACATTTGAAGAAAGATACCAATCCTGTAAACGTGGAACCTTACAGATATGCTTACCATCAGAAGCAAGAAATGAAAAGGCTAGTTGGCAAAATGTTGATCTCCAGGGTTATAAGACCATGCAACAGCTTGTATTCAGAAGCCCAGTCCTCTTAGTGAAAAAGAAAGATGGTAGCTGGTGTTTCTACATGGATTATAGGGCATTGAAGAATGCTACTGTCCCAGATAAATTTCCAATCCCAGTTATAGAAGAACTGTTTGATGAATTGAATGAAGCATTCATATTCTAA

mRNA sequence

ATGGCAAGTGTGAAGGAGAATGATCCATCTACTAATTGGGAAACCAGTTTGGAAAGAGTCGAAAAAAAGTTCAATATAGAGGATCACAACAACGATCAAAACAAGTTTAAAAAGATTGAGATGCTGGTCTTCAATGGCGAGGATCTTGATTCATGGATTAAACGATCTAGGGACCATGAAGAGAGGAAAAAATTACAGAATGAAGAGATATGCTTACCATCAGAAGCAAGAAATGAAAAGGCTAGTTGGCAAAATGTTGATCTCCAGGGTTATAAGACCATGCAACAGCTTGTATTCAGAAGCCCAGTCCTCTTAGTGAAAAAGAAAGATGGTAGCTGGTGTTTCTACATGGATTATAGGGCATTGAAGAATGCTACTGTCCCAGATAAATTTCCAATCCCAGTTATAGAAGAACTGTTTGATGAATTGAATGAAGCATTCATATTCTAA

Coding sequence (CDS)

ATGGCAAGTGTGAAGGAGAATGATCCATCTACTAATTGGGAAACCAGTTTGGAAAGAGTCGAAAAAAAGTTCAATATAGAGGATCACAACAACGATCAAAACAAGTTTAAAAAGATTGAGATGCTGGTCTTCAATGGCGAGGATCTTGATTCATGGATTAAACGATCTAGGGACCATGAAGAGAGGAAAAAATTACAGAATGAAGAGATATGCTTACCATCAGAAGCAAGAAATGAAAAGGCTAGTTGGCAAAATGTTGATCTCCAGGGTTATAAGACCATGCAACAGCTTGTATTCAGAAGCCCAGTCCTCTTAGTGAAAAAGAAAGATGGTAGCTGGTGTTTCTACATGGATTATAGGGCATTGAAGAATGCTACTGTCCCAGATAAATTTCCAATCCCAGTTATAGAAGAACTGTTTGATGAATTGAATGAAGCATTCATATTCTAA

Protein sequence

MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHEERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF

Homology

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BLAST of Pay0022122 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 101 SPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF 150
           SPV+LV KKDG++   +DYR L  AT+ D FP+P I+ L   +  A IF
Sbjct: 634 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 682

[Close]

BLAST of Pay0022122 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-06
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 101 SPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF 150
           SPV+LV KKDG++   +DYR L  AT+ D FP+P I+ L   +  A IF
Sbjct: 660 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 708

[Close]

BLAST of Pay0022122 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 26/104 (25.00%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 59  HEERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLV-------FRSPVLLVKKKDG 118
           ++++ +L+++E       R+  +  + +  Q  K ++  +       + SP+LLV KK  
Sbjct: 303 YKQQLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSS 362

Query: 119 ------SWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF 150
                  W   +DYR +    + DKFP+P I+++ D+L  A  F
Sbjct: 363 PNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYF 406

[Close]

BLAST of Pay0022122 vs. ExPASy TrEMBL
Match: A0A1S4DZ10 (uncharacterized protein LOC107991204 OS=Cucumis melo OX=3656 GN=LOC107991204 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE 60
           MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE
Sbjct: 1   MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE 60

Query: 61  ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR 120
           ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR
Sbjct: 61  ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR 120

Query: 121 ALKNATVPDKFPIPVIEELFDELNEAFIF 150
           ALKNATVPDKFPIPVIEELFDELNEAFIF
Sbjct: 121 ALKNATVPDKFPIPVIEELFDELNEAFIF 149

[Close]

BLAST of Pay0022122 vs. ExPASy TrEMBL
Match: A0A5A7V051 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005840 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 75  EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIP 134
           EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSW FY+DYRALKNATVPDKFPIP
Sbjct: 63  EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWRFYVDYRALKNATVPDKFPIP 122

Query: 135 VIEEL 140
           V+EEL
Sbjct: 123 VVEEL 127

[Close]

BLAST of Pay0022122 vs. ExPASy TrEMBL
Match: A0A5D3BUA5 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001570 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 94  MQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEEL 140
           MQQLVFRSPVLLVKKKDGSW FY+DYRALKNATVPDKFPIPV+EEL
Sbjct: 1   MQQLVFRSPVLLVKKKDGSWRFYVDYRALKNATVPDKFPIPVVEEL 46

[Close]

BLAST of Pay0022122 vs. ExPASy TrEMBL
Match: A0A5A7UZJ7 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005750 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 99  FRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF 150
           F SPVLLVKKKDGSW FY+DYRA+ NAT+PDKFPIPV EELFDELN A +F
Sbjct: 14  FSSPVLLVKKKDGSWRFYVDYRAVNNATIPDKFPIPVAEELFDELNGATVF 64

[Close]

BLAST of Pay0022122 vs. ExPASy TrEMBL
Match: A0A5A7T574 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001750 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 88  LQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAF 147
           + G    +++ F SPVLLVKKKDGSWCF +DYR + N TVPDKF IPV+EELFDELNEA 
Sbjct: 411 ISGVIRPRKIPFSSPVLLVKKKDGSWCFCVDYRVINNTTVPDKFLIPVVEELFDELNEAT 470

Query: 148 IF 150
           +F
Sbjct: 471 LF 472

[Close]

BLAST of Pay0022122 vs. NCBI nr
Match: XP_016901226.1 (PREDICTED: uncharacterized protein LOC107991204 [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE 60
           MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE
Sbjct: 1   MASVKENDPSTNWETSLERVEKKFNIEDHNNDQNKFKKIEMLVFNGEDLDSWIKRSRDHE 60

Query: 61  ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR 120
           ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR
Sbjct: 61  ERKKLQNEEICLPSEARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYR 120

Query: 121 ALKNATVPDKFPIPVIEELFDELNEAFIF 150
           ALKNATVPDKFPIPVIEELFDELNEAFIF
Sbjct: 121 ALKNATVPDKFPIPVIEELFDELNEAFIF 149

[Close]

BLAST of Pay0022122 vs. NCBI nr
Match: KAA0060684.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 75  EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIP 134
           EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSW FY+DYRALKNATVPDKFPIP
Sbjct: 63  EARNEKASWQNVDLQGYKTMQQLVFRSPVLLVKKKDGSWRFYVDYRALKNATVPDKFPIP 122

Query: 135 VIEEL 140
           V+EEL
Sbjct: 123 VVEEL 127

[Close]

BLAST of Pay0022122 vs. NCBI nr
Match: TYK03311.1 (hypothetical protein E5676_scaffold298G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-15
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 94  MQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEEL 140
           MQQLVFRSPVLLVKKKDGSW FY+DYRALKNATVPDKFPIPV+EEL
Sbjct: 1   MQQLVFRSPVLLVKKKDGSWRFYVDYRALKNATVPDKFPIPVVEEL 46

[Close]

BLAST of Pay0022122 vs. NCBI nr
Match: KAA0060678.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-15
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 99  FRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAFIF 150
           F SPVLLVKKKDGSW FY+DYRA+ NAT+PDKFPIPV EELFDELN A +F
Sbjct: 14  FSSPVLLVKKKDGSWRFYVDYRAVNNATIPDKFPIPVAEELFDELNGATVF 64

[Close]

BLAST of Pay0022122 vs. NCBI nr
Match: KAA0037988.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-15
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 88  LQGYKTMQQLVFRSPVLLVKKKDGSWCFYMDYRALKNATVPDKFPIPVIEELFDELNEAF 147
           + G    +++ F SPVLLVKKKDGSWCF +DYR + N TVPDKF IPV+EELFDELNEA 
Sbjct: 411 ISGVIRPRKIPFSSPVLLVKKKDGSWCFCVDYRVINNTTVPDKFLIPVVEELFDELNEAT 470

Query: 148 IF 150
           +F
Sbjct: 471 LF 472

The following BLAST results are available for this feature:

BLAST of Pay0022122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.3e-06	48.98	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.3e-06	48.98	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	2.9e-04	25.00	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Pay0022122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZ10	1.6e-79	100.00	uncharacterized protein LOC107991204 OS=Cucumis melo OX=3656 GN=LOC107991204 PE=...	[more]
A0A5A7V051	1.9e-27	95.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BUA5	7.5e-16	93.48	RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7UZJ7	3.7e-15	80.39	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7T574	3.7e-15	66.13	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Pay0022122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901226.1	3.4e-79	100.00	PREDICTED: uncharacterized protein LOC107991204 [Cucumis melo]	[more]
KAA0060684.1	3.9e-27	95.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03311.1	1.6e-15	93.48	hypothetical protein E5676_scaffold298G001570 [Cucumis melo var. makuwa]	[more]
KAA0060678.1	7.7e-15	80.39	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0037988.1	7.7e-15	66.13	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0022122 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 89..130 e-value: 1.4E-13 score: 52.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 131..149 e-value: 1.4E-13 score: 52.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 99..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0022122.1	Pay0022122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity