Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAAGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
mRNA sequence
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
Coding sequence (CDS)
ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
Protein sequence
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Homology
BLAST of Pay0021846 vs. ExPASy TrEMBL
Match:
A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)
HSP 1 Score: 296.6 bits (758), Expect = 6.0e-77
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 269
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+I
Sbjct: 270 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEI 329
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFE 153
LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 SLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361
BLAST of Pay0021846 vs. ExPASy TrEMBL
Match:
A0A5D3CF08 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE=4 SV=1)
HSP 1 Score: 292.7 bits (748), Expect = 8.7e-76
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
M PELVQSTNEAIQKIRSRMHT QSRQKSYADVRRKDLEFE+GDKVFLKVAPM+AYRLAL
Sbjct: 24 MSPELVQSTNEAIQKIRSRMHTTQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRAYRLAL 83
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNK+I
Sbjct: 84 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEI 143
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
PLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Sbjct: 144 PLVKVLWQNHRVEEATWEREDDMRSRYPELFEE 176
BLAST of Pay0021846 vs. ExPASy TrEMBL
Match:
A0A5A7TXT7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006400 PE=4 SV=1)
HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
MG ELVQSTNEAIQKIRS MHTAQSRQKSYADVRRKDLEF++GDKVFLKVAPMKAYRLAL
Sbjct: 940 MGHELVQSTNEAIQKIRSHMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKAYRLAL 999
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY+EQPVEVLAREVK LRN++I
Sbjct: 1000 PPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQPVEVLAREVKMLRNREI 1059
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Sbjct: 1060 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1092
BLAST of Pay0021846 vs. ExPASy TrEMBL
Match:
A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)
HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327
Query: 61 ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387
Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447
BLAST of Pay0021846 vs. ExPASy TrEMBL
Match:
A0A5A7UMF1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 PE=4 SV=1)
HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK
Sbjct: 88 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147
Query: 61 ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207
Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267
BLAST of Pay0021846 vs. NCBI nr
Match:
KAA0068212.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 269
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+I
Sbjct: 270 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEI 329
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFE 153
LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 SLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361
BLAST of Pay0021846 vs. NCBI nr
Match:
TYK08899.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
M PELVQSTNEAIQKIRSRMHT QSRQKSYADVRRKDLEFE+GDKVFLKVAPM+AYRLAL
Sbjct: 24 MSPELVQSTNEAIQKIRSRMHTTQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRAYRLAL 83
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNK+I
Sbjct: 84 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEI 143
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
PLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Sbjct: 144 PLVKVLWQNHRVEEATWEREDDMRSRYPELFEE 176
BLAST of Pay0021846 vs. NCBI nr
Match:
KAA0046059.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
MG ELVQSTNEAIQKIRS MHTAQSRQKSYADVRRKDLEF++GDKVFLKVAPMKAYRLAL
Sbjct: 940 MGHELVQSTNEAIQKIRSHMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKAYRLAL 999
Query: 61 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
PPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY+EQPVEVLAREVK LRN++I
Sbjct: 1000 PPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQPVEVLAREVKMLRNREI 1059
Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Sbjct: 1060 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1092
BLAST of Pay0021846 vs. NCBI nr
Match:
KAA0054731.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK
Sbjct: 88 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147
Query: 61 ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207
Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267
BLAST of Pay0021846 vs. NCBI nr
Match:
KAA0051368.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0
Query: 1 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327
Query: 61 ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387
Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VIQ0 | 6.0e-77 | 98.68 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ... | [more] |
A0A5D3CF08 | 8.7e-76 | 95.42 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE... | [more] |
A0A5A7TXT7 | 1.6e-74 | 94.12 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U7V9 | 3.6e-74 | 84.53 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... | [more] |
A0A5A7UMF1 | 3.6e-74 | 84.53 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 P... | [more] |
Match Name | E-value | Identity | Description | |