Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATAATCACACTGCTTAAAAATGAAATATTAACCGGTGAAAATTATGCAACATGGAAATCGAAACTGAATATGATTCTAGTTATTACTGATCTACGCTTCATCTTAATGGAGGAATGTTCTCTTTTCCTTACTCAAGGTACATTCAAGAGTGTTAGGGATGCATATGATCGCTGGAAAAAGGCAAATGACAAGGCCCACGTCTACATCATGGCTAGTATGTCTGACATACTGAGCAATAAACATAAGATCATGGTCACTACACGTCAGATCGTGGACTCTCTCAGAGAAATGTTTGGACAATTGTCCATTCAGATCAAACAAGAGACTATTAAATACGTTTATAATGCACGCATGAAAGACAGTCAATCTGTTAAAAAACATGTTCTCAACATGATAGTTCACTTCAATGTAGTAGAAATGAACGTAGTGGTCTTTGATGAGAAGAGTCAAGTGTCTTTTATCTTGAAATATCTTCCGAAGAGCTCTCTTCAATTTAACAACAATGCGGAAATGAACAAGATAAAGTACAACATGACTATCTTTCTAAACGAGTTGCAAACTTTTCAGTCTCTTAAAAGATAG
mRNA sequence
ATGTCTTCCTCAATAATCACACTGCTTAAAAATGAAATATTAACCGGTGAAAATTATGCAACATGGAAATCGAAACTGAATATGATTCTAGTTATTACTGATCTACGCTTCATCTTAATGGAGGAATGTTCTCTTTTCCTTACTCAAGGTACATTCAAGAGTGTTAGGGATGCATATGATCGCTGGAAAAAGGCAAATGACAAGGCCCACGTCTACATCATGGCTAGTATGTCTGACATACTGAGCAATAAACATAAGATCATGGTCACTACACGTCAGATCGTGGACTCTCTCAGAGAAATGTTTGGACAATTGTCCATTCAGATCAAACAAGAGACTATTAAATACGTTTATAATGCACGCATGAAAGACAGTCAATCTGTTAAAAAACATGTTCTCAACATGATAGTTCACTTCAATGTAGTAGAAATGAACGTAGTGGTCTTTGATGAGAAGAGTCAAGTGTCTTTTATCTTGAAATATCTTCCGAAGAGCTCTCTTCAATTTAACAACAATGCGGAAATGAACAAGATAAAGTACAACATGACTATCTTTCTAAACGAGTTGCAAACTTTTCAGTCTCTTAAAAGATAG
Coding sequence (CDS)
ATGTCTTCCTCAATAATCACACTGCTTAAAAATGAAATATTAACCGGTGAAAATTATGCAACATGGAAATCGAAACTGAATATGATTCTAGTTATTACTGATCTACGCTTCATCTTAATGGAGGAATGTTCTCTTTTCCTTACTCAAGGTACATTCAAGAGTGTTAGGGATGCATATGATCGCTGGAAAAAGGCAAATGACAAGGCCCACGTCTACATCATGGCTAGTATGTCTGACATACTGAGCAATAAACATAAGATCATGGTCACTACACGTCAGATCGTGGACTCTCTCAGAGAAATGTTTGGACAATTGTCCATTCAGATCAAACAAGAGACTATTAAATACGTTTATAATGCACGCATGAAAGACAGTCAATCTGTTAAAAAACATGTTCTCAACATGATAGTTCACTTCAATGTAGTAGAAATGAACGTAGTGGTCTTTGATGAGAAGAGTCAAGTGTCTTTTATCTTGAAATATCTTCCGAAGAGCTCTCTTCAATTTAACAACAATGCGGAAATGAACAAGATAAAGTACAACATGACTATCTTTCTAAACGAGTTGCAAACTTTTCAGTCTCTTAAAAGATAG
Protein sequence
MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR
Homology
BLAST of Pay0021637 vs. ExPASy TrEMBL
Match:
A0A1S3C9B1 (uncharacterized protein LOC103498451 OS=Cucumis melo OX=3656 GN=LOC103498451 PE=4 SV=1)
HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 18 NYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM 77
+YATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM
Sbjct: 7 DYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM 66
Query: 78 SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV 137
SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV
Sbjct: 67 SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV 126
Query: 138 HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 197
HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR
Sbjct: 127 HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 186
BLAST of Pay0021637 vs. ExPASy TrEMBL
Match:
A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)
HSP 1 Score: 280.4 bits (716), Expect = 5.7e-72
Identity = 147/196 (75.00%), Postives = 166/196 (84.69%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTGENYATWKSKLNMILVI DLRF+LMEEC F TQ +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W KANDKA +Y++AS+SDILS KH+IMVT RQI+DSLREMFGQ SIQIKQE IKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKY 180
RMK+ QSV++HVL MIV+FNV EMN +FDEKSQVS+ILK L KS LQF +N +MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
Query: 181 NMTIFLNELQTFQSLK 197
NMT L ELQTFQSLK
Sbjct: 181 NMTTLLKELQTFQSLK 196
BLAST of Pay0021637 vs. ExPASy TrEMBL
Match:
A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)
HSP 1 Score: 280.4 bits (716), Expect = 5.7e-72
Identity = 147/196 (75.00%), Postives = 166/196 (84.69%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTGENYATWKSKLNMILVI DLRF+LMEEC F TQ +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W KANDKA +Y++AS+SDILS KH+IMVT RQI+DSLREMFGQ SIQIKQE IKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKY 180
RMK+ QSV++HVL MIV+FNV EMN +FDEKSQVS+ILK L KS LQF +N +MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
Query: 181 NMTIFLNELQTFQSLK 197
NMT L ELQTFQSLK
Sbjct: 181 NMTTLLKELQTFQSLK 196
BLAST of Pay0021637 vs. ExPASy TrEMBL
Match:
A0A5D3DDU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00010 PE=4 SV=1)
HSP 1 Score: 242.3 bits (617), Expect = 1.7e-60
Identity = 128/168 (76.19%), Postives = 141/168 (83.93%), Query Frame = 0
Query: 29 ILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASMSDILSNKHKIM 88
ILVI DLRFILM+EC F TQ +SV+D YDRW KANDKA VYI+ASMSDILS KH+IM
Sbjct: 39 ILVIADLRFILMDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIM 98
Query: 89 VTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIVHFNVVEMNVVV 148
VT QI+DSLREMFGQ SIQIKQ+ IKYVYNA MK+ QSV+ HV++MIVHFNV EMN VV
Sbjct: 99 VTACQIMDSLREMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVV 158
Query: 149 FDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLK 197
FDEKSQ+SFILK LPKS LQF +NAEMNKI YNMT FL EL TFQSLK
Sbjct: 159 FDEKSQMSFILKSLPKSFLQFPSNAEMNKINYNMTTFLKELHTFQSLK 206
BLAST of Pay0021637 vs. ExPASy TrEMBL
Match:
A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 3.0e-60
Identity = 127/178 (71.35%), Postives = 146/178 (82.02%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTG+NY TWKSKLNMILVI DLR ILME+C F +Q +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W K NDKA +YI+ SM DILS KH+IMVT RQI+DS+REMFGQ SIQIKQE IKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKI 179
MK+ QSV++HVL+MIV+FN+ EMN VVFDEKSQVS+ILK L KS LQF +N EMNKI
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFLQFRSNMEMNKI 178
BLAST of Pay0021637 vs. NCBI nr
Match:
XP_008459275.1 (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])
HSP 1 Score: 345.5 bits (885), Expect = 3.0e-91
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 18 NYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM 77
+YATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM
Sbjct: 7 DYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM 66
Query: 78 SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV 137
SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV
Sbjct: 67 SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV 126
Query: 138 HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 197
HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR
Sbjct: 127 HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 186
BLAST of Pay0021637 vs. NCBI nr
Match:
KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71
Identity = 147/196 (75.00%), Postives = 166/196 (84.69%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTGENYATWKSKLNMILVI DLRF+LMEEC F TQ +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W KANDKA +Y++AS+SDILS KH+IMVT RQI+DSLREMFGQ SIQIKQE IKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKY 180
RMK+ QSV++HVL MIV+FNV EMN +FDEKSQVS+ILK L KS LQF +N +MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
Query: 181 NMTIFLNELQTFQSLK 197
NMT L ELQTFQSLK
Sbjct: 181 NMTTLLKELQTFQSLK 196
BLAST of Pay0021637 vs. NCBI nr
Match:
TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71
Identity = 147/196 (75.00%), Postives = 166/196 (84.69%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTGENYATWKSKLNMILVI DLRF+LMEEC F TQ +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W KANDKA +Y++AS+SDILS KH+IMVT RQI+DSLREMFGQ SIQIKQE IKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKY 180
RMK+ QSV++HVL MIV+FNV EMN +FDEKSQVS+ILK L KS LQF +N +MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
Query: 181 NMTIFLNELQTFQSLK 197
NMT L ELQTFQSLK
Sbjct: 181 NMTTLLKELQTFQSLK 196
BLAST of Pay0021637 vs. NCBI nr
Match:
TYK21841.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 242.3 bits (617), Expect = 3.6e-60
Identity = 128/168 (76.19%), Postives = 141/168 (83.93%), Query Frame = 0
Query: 29 ILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASMSDILSNKHKIM 88
ILVI DLRFILM+EC F TQ +SV+D YDRW KANDKA VYI+ASMSDILS KH+IM
Sbjct: 39 ILVIADLRFILMDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIM 98
Query: 89 VTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIVHFNVVEMNVVV 148
VT QI+DSLREMFGQ SIQIKQ+ IKYVYNA MK+ QSV+ HV++MIVHFNV EMN VV
Sbjct: 99 VTACQIMDSLREMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVV 158
Query: 149 FDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLK 197
FDEKSQ+SFILK LPKS LQF +NAEMNKI YNMT FL EL TFQSLK
Sbjct: 159 FDEKSQMSFILKSLPKSFLQFPSNAEMNKINYNMTTFLKELHTFQSLK 206
BLAST of Pay0021637 vs. NCBI nr
Match:
KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 6.1e-60
Identity = 127/178 (71.35%), Postives = 146/178 (82.02%), Query Frame = 0
Query: 1 MSSSIITLLKNEILTGENYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYD 60
MSSSII LLK + LTG+NY TWKSKLNMILVI DLR ILME+C F +Q +SV+DAYD
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 RWKKANDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNA 120
W K NDKA +YI+ SM DILS KH+IMVT RQI+DS+REMFGQ SIQIKQE IKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RMKDSQSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKI 179
MK+ QSV++HVL+MIV+FN+ EMN VVFDEKSQVS+ILK L KS LQF +N EMNKI
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFLQFRSNMEMNKI 178
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C9B1 | 1.5e-91 | 99.44 | uncharacterized protein LOC103498451 OS=Cucumis melo OX=3656 GN=LOC103498451 PE=... | [more] |
A0A5D3D0D9 | 5.7e-72 | 75.00 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210... | [more] |
A0A5A7VA67 | 5.7e-72 | 75.00 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011... | [more] |
A0A5D3DDU7 | 1.7e-60 | 76.19 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G000... | [more] |
A0A5D3DQJ2 | 3.0e-60 | 71.35 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033... | [more] |
Match Name | E-value | Identity | Description | |
XP_008459275.1 | 3.0e-91 | 99.44 | PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo] | [more] |
KAA0063887.1 | 1.2e-71 | 75.00 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK15919.1 | 1.2e-71 | 75.00 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK21841.1 | 3.6e-60 | 76.19 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0040193.1 | 6.1e-60 | 71.35 | gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |