Pay0021207 (gene) Melon (Payzawat) v1

Overview
NamePay0021207
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionIntegrase
Locationchr03: 9405181 .. 9405913 (-)
RNA-Seq ExpressionPay0021207
SyntenyPay0021207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGCATAAAGAACAAAAGAAAATTGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTAGAGCCTACATGGTATCTTGATAGTGGTTGTAGCAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGGACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTTTAAAAGTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGGTGTTCTTATTGCCAAGGTAAAAATGACTGCTAATAAGATGTTTCCTCTTAACTTTACATATGGTCAAATATCTTGCTTCAGCAGCATATTGAAGGATCCATCCTGGCTTTGGCATTTTAGATATGGTCACTTAAACTTCAAATCACTATCTTATTTGTGCAAAAATCATATGGTGAGAGGTATACAAAATATCAACCATGAGACAAATATTTGTGAAGTGTGTATTCTTGCAAAACATCATCGAGATTCATTTCCAACTGGGAAAGCTTGGAGAGCCTCTAAACCTCTCGAGTTGATTCATACAGATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATCGATATTTCATAA

mRNA sequence

ATGAATATGCATAAAGAACAAAAGAAAATTGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTAGAGCCTACATGGTATCTTGATAGTGGTTGTAGCAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGGACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTTTAAAAGTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGGTGTTCTTATTGCCAAGATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATCGATATTTCATAA

Coding sequence (CDS)

ATGAATATGCATAAAGAACAAAAGAAAATTGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTAGAGCCTACATGGTATCTTGATAGTGGTTGTAGCAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACAAAGAAAGGGACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTTTAAAAGTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGGTGTTCTTATTGCCAAGATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATCGATATTTCATAA

Protein sequence

MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQAGVLIAKICVVLCEQQQMEVIDIS
Homology
BLAST of Pay0021207 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-05
Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 30  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVF 89
           W  D+GC++HM  +RSIF +   S + +   G    + + G G + +    GT ++ +V 
Sbjct: 79  WIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNI----GTVQLHDVS 138

Query: 90  YVPGLKHNLLSI 102
           YVP L  NL+S+
Sbjct: 139 YVPDLPVNLISV 146

BLAST of Pay0021207 vs. ExPASy TrEMBL
Match: A0A1S3CI07 (uncharacterized protein LOC103500978 OS=Cucumis melo OX=3656 GN=LOC103500978 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 140/147 (95.24%), Postives = 141/147 (95.92%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKK DEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 1   MNMHKEQKKNDEGILFLACSVQDNVLEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 61  GDNTILQVKGQCDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120

Query: 121 KDQAGVLIAKICVVLCEQQQMEVIDIS 148
           KDQ  VLIAKI VVLCEQQQMEVIDIS
Sbjct: 121 KDQPSVLIAKIFVVLCEQQQMEVIDIS 147

BLAST of Pay0021207 vs. ExPASy TrEMBL
Match: A0A5D3CLV1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. ExPASy TrEMBL
Match: A0A5D3BQ81 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. ExPASy TrEMBL
Match: A0A5D3E3T2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. ExPASy TrEMBL
Match: A0A5A7UZJ8 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. NCBI nr
Match: XP_008462674.1 (PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 9.8e-71
Identity = 140/147 (95.24%), Postives = 141/147 (95.92%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKK DEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 1   MNMHKEQKKNDEGILFLACSVQDNVLEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 61  GDNTILQVKGQCDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120

Query: 121 KDQAGVLIAKICVVLCEQQQMEVIDIS 148
           KDQ  VLIAKI VVLCEQQQMEVIDIS
Sbjct: 121 KDQPSVLIAKIFVVLCEQQQMEVIDIS 147

BLAST of Pay0021207 vs. NCBI nr
Match: TYJ95504.1 (integrase [Cucumis melo var. makuwa] >TYK08522.1 integrase [Cucumis melo var. makuwa] >TYK12883.1 integrase [Cucumis melo var. makuwa] >TYK20599.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. NCBI nr
Match: KAA0060377.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. NCBI nr
Match: TYK30104.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. NCBI nr
Match: KAA0039947.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 60
           MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT
Sbjct: 310 MNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKT 369

Query: 61  GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 120
           GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI
Sbjct: 370 GDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAI 429

Query: 121 KDQAGVLIAKI 132
           KDQAGVLIAK+
Sbjct: 430 KDQAGVLIAKV 440

BLAST of Pay0021207 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 27  EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKG 86
           E  W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G
Sbjct: 266 ENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG 325

Query: 87  TKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFE 115
            K + NV YVPG++ N LS+ QL + G +VS E
Sbjct: 326 NKTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358

BLAST of Pay0021207 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 30  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNV 89
           W +      +MT     F TLD +F++ V T D T L V+G+GD+ ++ K+G K+ + NV
Sbjct: 280 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 339

Query: 90  FYVPGLKHNLLSIGQLLQRGLKVS 113
            +VPGL  N+LS G+++ +   +S
Sbjct: 340 IFVPGLNRNVLSFGKMVSKRYSIS 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P256019.7e-0533.33Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A1S3CI074.7e-7195.24uncharacterized protein LOC103500978 OS=Cucumis melo OX=3656 GN=LOC103500978 PE=... [more]
A0A5D3CLV11.4e-6799.24Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4... [more]
A0A5D3BQ811.4e-6799.24Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00890 PE=4... [more]
A0A5D3E3T21.4e-6799.24Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00030 PE=4... [more]
A0A5A7UZJ81.4e-6799.24Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4... [more]
Match NameE-valueIdentityDescription
XP_008462674.19.8e-7195.24PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo][more]
TYJ95504.12.9e-6799.24integrase [Cucumis melo var. makuwa] >TYK08522.1 integrase [Cucumis melo var. ma... [more]
KAA0060377.12.9e-6799.24integrase [Cucumis melo var. makuwa][more]
TYK30104.12.9e-6799.24integrase [Cucumis melo var. makuwa][more]
KAA0039947.12.9e-6799.24integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G20980.19.9e-1343.01Gag-Pol-related retrotransposon family protein [more]
AT3G21000.12.1e-1036.90Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 27..121
NoneNo IPR availablePANTHERPTHR34676:SF9SUBFAMILY NOT NAMEDcoord: 27..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0021207.1Pay0021207.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006397 mRNA processing
molecular_function GO:0003729 mRNA binding
molecular_function GO:0008270 zinc ion binding