Pay0020827 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020827
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 24661137 .. 24661586 (-)
RNA-Seq Expression	Pay0020827
Synteny	Pay0020827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACCTAGATACTGCGTATGCAATTCACATTGTTAGTCAATGCATAGCTGCTCCTCGTACTATTCACTTTACTACTGTCCTTTGTATTATTCGTTATATTAAAGGTACTTTGGGTCATAGTCTACAGTTCTCCTCACATTCCTCTTTGGTTCTCTCTGGATTCTTTGATGCTGATTGGACAGGTCATCCTACTGATAGAAGATCCAGCACTAGTTATTGCATCTATTTAGGTGATGCTCTTATCTCTTGGCGCAGCAAGAAACAATATGTTGTTTCTCGTTCCAGCATAGAGTCTGAATATCGTGCTCTGGCTGATGCCACTTTAGAATTAATATGGCTTCATTGGCTTCTTACTGTTGTGAGGGCTCCACAAAGATCACCCATTATTCTTCATTGTGATAACTGTAGTGCTATTCAGATTGCACACGATGTATTCCATGAATGA

mRNA sequence

ATGACCCACCTAGATACTGCGTATGCAATTCACATTGTTAGTCAATGCATAGCTGCTCCTCGTACTATTCACTTTACTACTGTCCTTTGTATTATTCGTTATATTAAAGGTACTTTGGGTCATAGTCTACAGTTCTCCTCACATTCCTCTTTGGTTCTCTCTGGATTCTTTGATGCTGATTGGACAGGTCATCCTACTGATAGAAGATCCAGCACTAGTTATTGCATCTATTTAGGTGATGCTCTTATCTCTTGGCGCAGCAAGAAACAATATGTTGTTTCTCGTTCCAGCATAGAGTCTGAATATCGTGCTCTGGCTGATGCCACTTTAGAATTAATATGGCTTCATTGGCTTCTTACTGTTGTGAGGGCTCCACAAAGATCACCCATTATTCTTCATTGTGATAACTGTAGTGCTATTCAGATTGCACACGATGTATTCCATGAATGA

Coding sequence (CDS)

ATGACCCACCTAGATACTGCGTATGCAATTCACATTGTTAGTCAATGCATAGCTGCTCCTCGTACTATTCACTTTACTACTGTCCTTTGTATTATTCGTTATATTAAAGGTACTTTGGGTCATAGTCTACAGTTCTCCTCACATTCCTCTTTGGTTCTCTCTGGATTCTTTGATGCTGATTGGACAGGTCATCCTACTGATAGAAGATCCAGCACTAGTTATTGCATCTATTTAGGTGATGCTCTTATCTCTTGGCGCAGCAAGAAACAATATGTTGTTTCTCGTTCCAGCATAGAGTCTGAATATCGTGCTCTGGCTGATGCCACTTTAGAATTAATATGGCTTCATTGGCTTCTTACTGTTGTGAGGGCTCCACAAAGATCACCCATTATTCTTCATTGTGATAACTGTAGTGCTATTCAGATTGCACACGATGTATTCCATGAATGA

Protein sequence

MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADWTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLTVVRAPQRSPIILHCDNCSAIQIAHDVFHE

Homology

[Close]

BLAST of Pay0020827 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-22
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 2    THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADW 61
            T  D +YA++ +SQ +  P   H+  +  ++RY+ GT  H +     ++L L  + DADW
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 62   TGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLTV 121
             G   D  S+  Y +YLG   ISW SKKQ  V RSS E+EYR++A+ + EL W+  LLT 
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 122  VRAPQRSPIILHCDNCSAIQI-AHDVFH 149
            +      P +++CDN  A  + A+ VFH
Sbjct: 1361 LGIQLSHPPVIYCDNVGATYLCANPVFH 1388

[Close]

BLAST of Pay0020827 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 2    THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADW 61
            T  D +YA++ +SQ +  P   H   +  I+RY+ GT  H +     ++L L  + DADW
Sbjct: 1258 TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADW 1317

Query: 62   TGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLTV 121
             G   D  S+  Y +YLG   ISW SKKQ  V RSS E+EYR++A+ + E+ W+  LLT 
Sbjct: 1318 AGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTE 1377

Query: 122  VRAPQRSPIILHCDNCSAIQI-AHDVFH 149
            +      P +++CDN  A  + A+ VFH
Sbjct: 1378 LGIRLTRPPVIYCDNVGATYLCANPVFH 1405

[Close]

BLAST of Pay0020827 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-21
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           +T  D +YA++IV Q +  P    F  +  ++RY+KGT+ H L    +S L +  F D+D
Sbjct: 112 LTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 171

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIW 115
           W G  + RRS+T +C +LG  +ISW +K+Q  VSRSS E+EYRALA    EL W
Sbjct: 172 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Pay0020827 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           +T  D A A+ ++SQ  + P   H+  +  ++RY++ T  + L+F+   +  L G+ DAD
Sbjct: 19  VTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDAD 78

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWL 116
           W G    RRS++ Y   L    +SWRSKKQ  V+ SS E EY AL++AT E +WL
Sbjct: 79  WAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Pay0020827 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-17
Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 2    THLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDADW 61
            T  D A+A+ +VS+ +  P   H+  V  I+RY++GT G  L F   S  +L G+ DAD 
Sbjct: 1125 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADM 1184

Query: 62   TGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLTV 121
             G   +R+SST Y        ISW+SK Q  V+ S+ E+EY A  +   E+IWL   L  
Sbjct: 1185 AGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQE 1244

Query: 122  VRAPQRSPIILHCDNCSAIQIA-HDVFH 149
            +   Q+   +++CD+ SAI ++ + ++H
Sbjct: 1245 LGLHQKE-YVVYCDSQSAIDLSKNSMYH 1270

[Close]

BLAST of Pay0020827 vs. ExPASy TrEMBL
Match: A0A1S4E4U9 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992097 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.5e-77
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           MTHLDTAYAIHIVSQ IAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVL GFFDAD
Sbjct: 1   MTHLDTAYAIHIVSQFIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLFGFFDAD 60

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
           WTGHPTDRRSSTSYCIYLGDALISWRSKKQ+VVSRSS ESEYRALADATLELIWLHWLLT
Sbjct: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQHVVSRSSTESEYRALADATLELIWLHWLLT 120

Query: 121 VVRAPQRSPIILHCDNCSAIQIAHDVFHE 150
           V+RAPQRSPIILHCDNCSAIQIAHDVFHE
Sbjct: 121 VMRAPQRSPIILHCDNCSAIQIAHDVFHE 149

[Close]

BLAST of Pay0020827 vs. ExPASy TrEMBL
Match: A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 123/150 (82.00%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1054 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1113

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1114 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1173

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             +RAPQ SPIILHCDN SAIQIAH DVFHE
Sbjct: 1174 DMRAPQTSPIILHCDNHSAIQIAHNDVFHE 1203

[Close]

BLAST of Pay0020827 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1137 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1196

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1197 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1256

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 1257 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 1286

[Close]

BLAST of Pay0020827 vs. ExPASy TrEMBL
Match: A0A5D3DWU7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00160 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 553 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 612

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
           W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 613 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 672

Query: 121 VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
            + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 673 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 702

[Close]

BLAST of Pay0020827 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1137 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1196

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1197 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1256

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 1257 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 1286

[Close]

BLAST of Pay0020827 vs. NCBI nr
Match: XP_016903254.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 9.3e-77
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           MTHLDTAYAIHIVSQ IAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVL GFFDAD
Sbjct: 1   MTHLDTAYAIHIVSQFIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLFGFFDAD 60

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
           WTGHPTDRRSSTSYCIYLGDALISWRSKKQ+VVSRSS ESEYRALADATLELIWLHWLLT
Sbjct: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQHVVSRSSTESEYRALADATLELIWLHWLLT 120

Query: 121 VVRAPQRSPIILHCDNCSAIQIAHDVFHE 150
           V+RAPQRSPIILHCDNCSAIQIAHDVFHE
Sbjct: 121 VMRAPQRSPIILHCDNCSAIQIAHDVFHE 149

[Close]

BLAST of Pay0020827 vs. NCBI nr
Match: KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 123/150 (82.00%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1054 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1113

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1114 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1173

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             +RAPQ SPIILHCDN SAIQIAH DVFHE
Sbjct: 1174 DMRAPQTSPIILHCDNHSAIQIAHNDVFHE 1203

[Close]

BLAST of Pay0020827 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 6.7e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1137 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1196

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1197 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1256

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 1257 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 1286

[Close]

BLAST of Pay0020827 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 6.7e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1105 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1164

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1165 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1224

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 1225 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 1254

[Close]

BLAST of Pay0020827 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 6.7e-59
Identity = 121/150 (80.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1    MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
            +T  D AYA+HIVSQ +AAPRTIHFT VL I+RYIKGTLGH LQFSS SSLVLSGF DAD
Sbjct: 1137 VTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGFSDAD 1196

Query: 61   WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
            W G PTDRRS+T YC YLGDALISWRSKKQ VVSRSS ESEYRALADAT ELIWL WLLT
Sbjct: 1197 WAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWLRWLLT 1256

Query: 121  VVRAPQRSPIILHCDNCSAIQIAH-DVFHE 150
             + APQ SP ILHCDN SAIQIAH DVFHE
Sbjct: 1257 DMGAPQTSPTILHCDNHSAIQIAHNDVFHE 1286

[Close]

BLAST of Pay0020827 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-31
Identity = 70/150 (46.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           +T LD ++A++ +SQ   APR  H   V+ I+ YIKGT+G  L +SS + + L  F DA 
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIWLHWLLT 120
           +      RRS+  YC++LG +LISW+SKKQ VVS+SS E+EYRAL+ AT E++WL     
Sbjct: 450 FQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFR 509

Query: 121 VVRAPQRSPIILHCDNCSAIQIA-HDVFHE 150
            ++ P   P +L CDN +AI IA + VFHE
Sbjct: 510 ELQLPLSKPTLLFCDNTAAIHIATNAVFHE 539

[Close]

BLAST of Pay0020827 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-22
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTHLDTAYAIHIVSQCIAAPRTIHFTTVLCIIRYIKGTLGHSLQFSSHSSLVLSGFFDAD 60
           +T  D +YA++IV Q +  P    F  +  ++RY+KGT+ H L    +S L +  F D+D
Sbjct: 112 LTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 171

Query: 61  WTGHPTDRRSSTSYCIYLGDALISWRSKKQYVVSRSSIESEYRALADATLELIW 115
           W G  + RRS+T +C +LG  +ISW +K+Q  VSRSS E+EYRALA    EL W
Sbjct: 172 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Pay0020827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	5.2e-22	38.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-21	38.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	5.7e-21	43.86	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CV72	1.3e-17	39.13	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	5.0e-17	35.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Pay0020827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4U9	4.5e-77	96.64	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7UVX4	1.3e-60	82.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DG18	3.2e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWU7	3.2e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	3.2e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Pay0020827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903254.1	9.3e-77	96.64	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAA0058316.1	2.7e-60	82.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0043149.1	6.7e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065380.1	6.7e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	6.7e-59	80.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Pay0020827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-31	46.67	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.1e-22	43.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 2..121
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..121
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 55..149 e-value: 1.97695E-41 score: 132.977

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020827.1	Pay0020827.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding