Pay0020380 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020380
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Polyprotein
Location	chr02: 5838686 .. 5839462 (-)
RNA-Seq Expression	Pay0020380
Synteny	Pay0020380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCTTTCTTAAGTCTTGCAGCTCCAAGAAATTTGTTGGTGATCATTCATTAGAAAAAGAAGAATATGTTGAAAAAGGGAAAAGTTTAGTGAAATGGAAGATGCCAAAAGTCCCAATCCACAAAATCTATGAAGAAAGAAGAAAAAACCACTTTTTTATTTTTCCTTCAAAGAATTCTGATCCTTCCATCGAAACCACAGAAGCCCATATTAGCTTTGGCAATAAAGGAGGATTTTTCAGATTATTTAATCAAACCCCTCCTAGTGATTTTGGAAGATTCAACACAATGAACATAGGCCTTGTTCAAATTGGTGTAAAAACCCTAACCAAAAAAATCCCTCCAAATGCTTCCATAATTTTATGTCTACGTGACAATAGAATTGAAAAACTTGAAGATTCACTAATTGCTTTAGTTGAATCAAATTTAAGAGATGGTCCATTTTATTTCAATGTTTTTCCAAACATAAATTTGTCTTTGTTTTCAGCAATCGCTAATGTTGTGAGTGTCCACTTTTCGATAAAAGGGTTTGATCAAATTCCAAAAGGGTGTGAGCCAATTGCGGTGACATGTAGGACATGTTACAAGTTGAACCAAAACAATTTTGGATCAGAAGCTTTGATTGAGAGTCCTGTTGGAAAAACAGTGTTTTTCCAGACAGAGATTTTTGGAGATAATAGTGGTGATGTTGTTCAAAAAGTTACTATGTGGGATCAAGTTCAATTGCCTTCTGATTGGCCTCCTCAGCTGCAAATACCTACGTTTCCTAAGTAA

mRNA sequence

ATGTCACTCTTTCTTAAGTCTTGCAGCTCCAAGAAATTTGTTGGTGATCATTCATTAGAAAAAGAAGAATATGTTGAAAAAGGGAAAAGGTTTGATCAAATTCCAAAAGGGTGTGAGCCAATTGCGGTGACATGTAGGACATGTTACAAGTTGAACCAAAACAATTTTGGATCAGAAGCTTTGATTGAGAGTCCTGTTGGAAAAACAGTGTTTTTCCAGACAGAGATTTTTGGAGATAATAGTGGTGATGTTGTTCAAAAAGTTACTATGTGGGATCAAGTTCAATTGCCTTCTGATTGGCCTCCTCAGCTGCAAATACCTACGTTTCCTAAGTAA

Coding sequence (CDS)

ATGTCACTCTTTCTTAAGTCTTGCAGCTCCAAGAAATTTGTTGGTGATCATTCATTAGAAAAAGAAGAATATGTTGAAAAAGGGAAAAGGTTTGATCAAATTCCAAAAGGGTGTGAGCCAATTGCGGTGACATGTAGGACATGTTACAAGTTGAACCAAAACAATTTTGGATCAGAAGCTTTGATTGAGAGTCCTGTTGGAAAAACAGTGTTTTTCCAGACAGAGATTTTTGGAGATAATAGTGGTGATGTTGTTCAAAAAGTTACTATGTGGGATCAAGTTCAATTGCCTTCTGATTGGCCTCCTCAGCTGCAAATACCTACGTTTCCTAAGTAA

Protein sequence

MSLFLKSCSSKKFVGDHSLEKEEYVEKGKRFDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQIPTFPK

Homology

[Close]

BLAST of Pay0020380 vs. ExPASy TrEMBL
Match: A0A0A0LXM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.6e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 29  KRFDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKV 88
           K  D+IPKG  PI VTCRTCYKLNQN+FGSEALIESPVGKTVFFQ EIF D+  DVVQKV
Sbjct: 181 KGLDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQKV 240

Query: 89  TMWDQVQLPSDWPPQLQIPTFPK 112
           TMW+QVQLPSDWPP+L IPT P+
Sbjct: 241 TMWNQVQLPSDWPPRLHIPTVPR 263

[Close]

BLAST of Pay0020380 vs. ExPASy TrEMBL
Match: A0A0A0LXM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.9e-05
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MSLFLKSCSSKKFVGDHSLEKEEYVEKGK 30
          MSLF KSCSSK FVGDHSLE+EEYVEKGK
Sbjct: 1  MSLFFKSCSSKNFVGDHSLEEEEYVEKGK 29

HSP 2 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 47  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI 106
           TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI
Sbjct: 3   TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI 62

Query: 107 PTFPK 112
           PTFPK
Sbjct: 63  PTFPK 67

[Close]

BLAST of Pay0020380 vs. ExPASy TrEMBL
Match: A0A5D3D5V1 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00750 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 31  FDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTM 90
           F+Q+P+G  PI++  RTCYKL  + F + ALIESP GKTVFFQT+   +NS   VQKV+ 
Sbjct: 112 FEQLPQGTSPISLMWRTCYKLQGSAFPT-ALIESPQGKTVFFQTDF--ENSKVAVQKVSE 171

Query: 91  WDQV 95
           WD+V
Sbjct: 172 WDEV 172

[Close]

BLAST of Pay0020380 vs. ExPASy TrEMBL
Match: A0A5A7U9X3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00180 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 31  FDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTM 90
           F+Q+P+G  PI++  RTCYKL  + F + ALIESP GKTVFFQT+   +NS   VQKV+ 
Sbjct: 112 FEQLPQGTSPISLMWRTCYKLQGSAFPT-ALIESPQGKTVFFQTDF--ENSKVAVQKVSE 171

Query: 91  WDQV 95
           WD+V
Sbjct: 172 WDEV 172

[Close]

BLAST of Pay0020380 vs. ExPASy TrEMBL
Match: A0A0A0LZS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.3e-08
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 31  FDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTM 90
           F+Q+P+G  PI++  RTCYKL  +   + ALIESP GKTVFFQT    +NS    QKV+ 
Sbjct: 174 FEQLPQGTSPISLMWRTCYKLQASALPT-ALIESPQGKTVFFQTNF--ENSKVADQKVSQ 233

Query: 91  WDQV 95
           WD+V
Sbjct: 234 WDEV 234

[Close]

BLAST of Pay0020380 vs. NCBI nr
Match: KGN66493.1 (hypothetical protein Csa_007053 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.5e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 29  KRFDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKV 88
           K  D+IPKG  PI VTCRTCYKLNQN+FGSEALIESPVGKTVFFQ EIF D+  DVVQKV
Sbjct: 181 KGLDKIPKGSAPIVVTCRTCYKLNQNDFGSEALIESPVGKTVFFQIEIFEDDDDDVVQKV 240

Query: 89  TMWDQVQLPSDWPPQLQIPTFPK 112
           TMW+QVQLPSDWPP+L IPT P+
Sbjct: 241 TMWNQVQLPSDWPPRLHIPTVPR 263

[Close]

BLAST of Pay0020380 vs. NCBI nr
Match: KGN66493.1 (hypothetical protein Csa_007053 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MSLFLKSCSSKKFVGDHSLEKEEYVEKGK 30
          MSLF KSCSSK FVGDHSLE+EEYVEKGK
Sbjct: 1  MSLFFKSCSSKNFVGDHSLEEEEYVEKGK 29

HSP 2 Score: 141.4 bits (355), Expect = 4.8e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 47  TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI 106
           TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI
Sbjct: 3   TCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTMWDQVQLPSDWPPQLQI 62

Query: 107 PTFPK 112
           PTFPK
Sbjct: 63  PTFPK 67

[Close]

BLAST of Pay0020380 vs. NCBI nr
Match: KAG6590198.1 (hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 63/88 (71.59%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 29  KRFDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIF------GDNSG 88
           K FDQ+ KG EPI V+CRTCYKLNQ  FG EAL+ESPVGKTVFFQT+I       G   G
Sbjct: 179 KGFDQLAKGSEPIVVSCRTCYKLNQTKFGPEALLESPVGKTVFFQTQIVGKLNGGGGGGG 238

Query: 89  DVVQKVTMWDQVQLPSDWPPQLQIPTFP 111
           DVVQKVT WDQVQLPS+WPPQL IP FP
Sbjct: 239 DVVQKVTQWDQVQLPSNWPPQLHIPKFP 266

[Close]

BLAST of Pay0020380 vs. NCBI nr
Match: KAA0051217.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-09
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 31  FDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTM 90
           F+Q+P+G  PI++  RTCYKL  + F + ALIESP GKTVFFQT+   +NS   VQKV+ 
Sbjct: 112 FEQLPQGTSPISLMWRTCYKLQGSAFPT-ALIESPQGKTVFFQTDF--ENSKVAVQKVSE 171

Query: 91  WDQV 95
           WD+V
Sbjct: 172 WDEV 172

[Close]

BLAST of Pay0020380 vs. NCBI nr
Match: TYK18873.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-09
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 31  FDQIPKGCEPIAVTCRTCYKLNQNNFGSEALIESPVGKTVFFQTEIFGDNSGDVVQKVTM 90
           F+Q+P+G  PI++  RTCYKL  + F + ALIESP GKTVFFQT+   +NS   VQKV+ 
Sbjct: 112 FEQLPQGTSPISLMWRTCYKLQGSAFPT-ALIESPQGKTVFFQTDF--ENSKVAVQKVSE 171

Query: 91  WDQV 95
           WD+V
Sbjct: 172 WDEV 172

The following BLAST results are available for this feature:

BLAST of Pay0020380 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0020380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXM3	3.6e-31	79.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1	[more]
A0A0A0LXM3	9.9e-05	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614140 PE=4 SV=1	[more]
A0A5D3D5V1	3.0e-09	56.25	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00750 PE...	[more]
A0A5A7U9X3	3.0e-09	56.25	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00180 P...	[more]
A0A0A0LZS0	7.3e-08	53.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G614640 PE=4 SV=1	[more]

BLAST of Pay0020380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66493.1	7.5e-31	79.52	hypothetical protein Csa_007053 [Cucumis sativus]	[more]
KGN66493.1	2.0e-04	89.66	hypothetical protein Csa_007053 [Cucumis sativus]	[more]
KAG6590198.1	1.7e-27	71.59	hypothetical protein SDJN03_15621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0051217.1	6.2e-09	56.25	polyprotein [Cucumis melo var. makuwa]	[more]
TYK18873.1	6.2e-09	56.25	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0020380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020380.1	Pay0020380.1	mRNA