Pay0020320 (gene) Melon (Payzawat) v1

Overview


Name	Pay0020320
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA glycosylase
Location	chr10: 26064061 .. 26064711 (-)
RNA-Seq Expression	Pay0020320
Synteny	Pay0020320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTGAATTGTTGAAGGAGCATTGTCTTGGTTACAGAGCTGGTTACATAGTTGACTTTGCTCGACGTGTTAAAAATGGTAAAATTGATCTTCAAAGACTTGAAGTTCAAAATCCAAACTACTATTTCCCTAAAATCAAAGGATTTGGACCTTTTGCAACTGCCAATATACTAATGTGCCTCGGATTTTACCGCCAACTTCCAATTGATACTGAAACTATAAGGCACTTGAAACAGGTATTACCTAATTATTTAATTTCTTTCTTTATATCCTTTAACTCCCACTGCATGCATTTATGAGTATCGTTATTTTATTACTAATTAAATATAGGTTCATGGAATACAATTTTGCAACAACAAGACAGTACGGGAAGATGTCAAACTAATTTACGACAAGTATGCTCCTTTCCAATGCTTGGCCTACTGGTACGTACTCTATAATAATAATAAATCATTTTTCAAATACATTACCAAATCTTTGCTTTATTTATTTCCATTCATAAATATCTATTCATATGTATAAAATTTCTTTTCCTTATTCCTTTTAGGTTGGAGCTTGTGGAGTTTTATGAGAGCAAATTCGGGAAGCTAAGTGAACTGTGCTCTCTTGATTATCACAAGATCAGTGGCACCACACTTCAACTTTGA

mRNA sequence

ATGGGGGTTGAATTGTTGAAGGAGCATTGTCTTGGTTACAGAGCTGGTTACATAGTTGACTTTGCTCGACGTGTTAAAAATGGTAAAATTGATCTTCAAAGACTTGAAGTTCAAAATCCAAACTACTATTTCCCTAAAATCAAAGGATTTGGACCTTTTGCAACTGCCAATATACTAATGTGCCTCGGATTTTACCGCCAACTTCCAATTGATACTGAAACTATAAGGCACTTGAAACAGGTTCATGGAATACAATTTTGCAACAACAAGACAGTACGGGAAGATGTCAAACTAATTTACGACAAGTATGCTCCTTTCCAATGCTTGGCCTACTGGTTGGAGCTTGTGGAGTTTTATGAGAGCAAATTCGGGAAGCTAAGTGAACTGTGCTCTCTTGATTATCACAAGATCAGTGGCACCACACTTCAACTTTGA

Coding sequence (CDS)

ATGGGGGTTGAATTGTTGAAGGAGCATTGTCTTGGTTACAGAGCTGGTTACATAGTTGACTTTGCTCGACGTGTTAAAAATGGTAAAATTGATCTTCAAAGACTTGAAGTTCAAAATCCAAACTACTATTTCCCTAAAATCAAAGGATTTGGACCTTTTGCAACTGCCAATATACTAATGTGCCTCGGATTTTACCGCCAACTTCCAATTGATACTGAAACTATAAGGCACTTGAAACAGGTTCATGGAATACAATTTTGCAACAACAAGACAGTACGGGAAGATGTCAAACTAATTTACGACAAGTATGCTCCTTTCCAATGCTTGGCCTACTGGTTGGAGCTTGTGGAGTTTTATGAGAGCAAATTCGGGAAGCTAAGTGAACTGTGCTCTCTTGATTATCACAAGATCAGTGGCACCACACTTCAACTTTGA

Protein sequence

MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYESKFGKLSELCSLDYHKISGTTLQL

Homology

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BLAST of Pay0020320 vs. ExPASy TrEMBL
Match: A0A5D3CVT0 (DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00880 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.9e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60
           MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM
Sbjct: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60

Query: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120
           CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE
Sbjct: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120

Query: 121 SKFGKLSELCSLDYHKISGTTLQL 145
           SKFGKLSELCSLDYHKISGTTLQL
Sbjct: 121 SKFGKLSELCSLDYHKISGTTLQL 144

[Close]

BLAST of Pay0020320 vs. ExPASy TrEMBL
Match: A0A1S3CCY8 (uncharacterized protein LOC103499397 OS=Cucumis melo OX=3656 GN=LOC103499397 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.9e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60
           MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM
Sbjct: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60

Query: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120
           CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE
Sbjct: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120

Query: 121 SKFGKLSELCSLDYHKISGTTLQL 145
           SKFGKLSELCSLDYHKISGTTLQL
Sbjct: 121 SKFGKLSELCSLDYHKISGTTLQL 144

[Close]

BLAST of Pay0020320 vs. ExPASy TrEMBL
Match: A0A6J1GJ25 (uncharacterized protein LOC111454659 OS=Cucurbita moschata OX=3662 GN=LOC111454659 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLE--VQNPNYYFPKIKGFGPFATANI 60
           MGVE LK HCLGYRA Y+V FA+ V++G+I+LQ LE  V +P+  FPKIKGFGPFATANI
Sbjct: 182 MGVEALKNHCLGYRANYVVKFAQSVESGRINLQSLEKPVSSPD-AFPKIKGFGPFATANI 241

Query: 61  LMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEF 120
            MCLGFY QLPIDTETIRHLKQVHGIQ+C  KTV EDVK IYD YAP+QCLAYWLELV++
Sbjct: 242 FMCLGFYHQLPIDTETIRHLKQVHGIQYCTKKTVGEDVKQIYDTYAPYQCLAYWLELVQY 301

Query: 121 YESKFGKLSELCSLDYHKISGTTLQL 145
           YE+KFGKLSEL S DYHKISG+TL L
Sbjct: 302 YETKFGKLSELSSFDYHKISGSTLHL 326

[Close]

BLAST of Pay0020320 vs. ExPASy TrEMBL
Match: A0A6J1DS88 (uncharacterized protein LOC111023822 OS=Momordica charantia OX=3673 GN=LOC111023822 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 100/141 (70.92%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60
           M V LL++H +GYRA YI+D A+RV+NGKIDLQ++E       FPKIKGFGPF TAN+ M
Sbjct: 197 MSVLLLQKHFIGYRAVYIIDLAQRVQNGKIDLQKIE---RALSFPKIKGFGPFTTANVFM 256

Query: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120
           CLG Y +LPIDTETIRHLKQVHG Q CN KT  E VK +YDKYAPFQCLAYW+ELVE+YE
Sbjct: 257 CLGLYDRLPIDTETIRHLKQVHGRQDCNMKTAEEAVKDVYDKYAPFQCLAYWMELVEYYE 316

Query: 121 SKFGKLSELCSLDYHKISGTT 142
           S+FGKLSEL   DY KISGTT
Sbjct: 317 SRFGKLSELGWHDYKKISGTT 334

[Close]

BLAST of Pay0020320 vs. ExPASy TrEMBL
Match: A0A061FC08 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033523 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 77/143 (53.85%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 6   LKEHC-LGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFP-------KIKGFGPFATAN 65
           L E C LGYRA  I+  AR+V+NG+++L +LE  +    +        KIKGFGPF  +N
Sbjct: 227 LNERCNLGYRARCILQLARKVENGELELNKLEESSDTTSYERFYQKLMKIKGFGPFVCSN 286

Query: 66  ILMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVE 125
           I+MC+GFY ++P D+ETIRHLK VHG   C+ KT+ +D++ IY KYAPFQC+AYWLEL++
Sbjct: 287 IMMCIGFYERIPFDSETIRHLKMVHGKGKCSRKTIEKDIEEIYGKYAPFQCMAYWLELLD 346

Query: 126 FYESKFGKLSELCSLDYHKISGT 141
            YE+KFGKLSEL S  YH  +G+
Sbjct: 347 EYENKFGKLSELESSSYHLATGS 369

[Close]

BLAST of Pay0020320 vs. NCBI nr
Match: XP_008460619.1 (PREDICTED: uncharacterized protein LOC103499397 [Cucumis melo] >KAA0054220.1 DNA glycosylase [Cucumis melo var. makuwa] >TYK15044.1 DNA glycosylase [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 3.9e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60
           MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM
Sbjct: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60

Query: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120
           CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE
Sbjct: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120

Query: 121 SKFGKLSELCSLDYHKISGTTLQL 145
           SKFGKLSELCSLDYHKISGTTLQL
Sbjct: 121 SKFGKLSELCSLDYHKISGTTLQL 144

[Close]

BLAST of Pay0020320 vs. NCBI nr
Match: KAG6585875.1 (hypothetical protein SDJN03_18608, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020778.1 hypothetical protein SDJN02_17466, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLE--VQNPNYYFPKIKGFGPFATANI 60
           MGVE LK HCLGYRA Y+V FA+ V++G+I+LQ LE  V +P+  FPKIKGFGPFATANI
Sbjct: 182 MGVEALKNHCLGYRANYVVKFAQSVESGRINLQSLEKPVSSPD-AFPKIKGFGPFATANI 241

Query: 61  LMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEF 120
            MCLGFY QLPIDTETIRHLKQVHGIQ+C  KTV EDVK IYD YAP+QCLAYWLELV++
Sbjct: 242 FMCLGFYHQLPIDTETIRHLKQVHGIQYCTKKTVGEDVKQIYDTYAPYQCLAYWLELVQY 301

Query: 121 YESKFGKLSELCSLDYHKISGTTLQL 145
           YE+KFGKLSEL S DYHKISG+TL L
Sbjct: 302 YETKFGKLSELSSFDYHKISGSTLHL 326

[Close]

BLAST of Pay0020320 vs. NCBI nr
Match: XP_022951918.1 (uncharacterized protein LOC111454659 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-58
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLE--VQNPNYYFPKIKGFGPFATANI 60
           MGVE LK HCLGYRA Y+V FA+ V++G+I+LQ LE  V +P+  FPKIKGFGPFATANI
Sbjct: 182 MGVEALKNHCLGYRANYVVKFAQSVESGRINLQSLEKPVSSPD-AFPKIKGFGPFATANI 241

Query: 61  LMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEF 120
            MCLGFY QLPIDTETIRHLKQVHGIQ+C  KTV EDVK IYD YAP+QCLAYWLELV++
Sbjct: 242 FMCLGFYHQLPIDTETIRHLKQVHGIQYCTKKTVGEDVKQIYDTYAPYQCLAYWLELVQY 301

Query: 121 YESKFGKLSELCSLDYHKISGTTLQL 145
           YE+KFGKLSEL S DYHKISG+TL L
Sbjct: 302 YETKFGKLSELSSFDYHKISGSTLHL 326

[Close]

BLAST of Pay0020320 vs. NCBI nr
Match: XP_023521143.1 (uncharacterized protein LOC111784765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-58
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLE--VQNPNYYFPKIKGFGPFATANI 60
           MGVE LK HCLGYRA Y+V FA+ V++G+I+LQ LE  V +P+  FPKIKGFGPFATANI
Sbjct: 38  MGVEALKNHCLGYRANYMVKFAQSVESGRINLQSLEKPVSSPD-AFPKIKGFGPFATANI 97

Query: 61  LMCLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEF 120
            MCLGFY QLPIDTETIRHLKQVHGIQ+C  KTV EDVK IYD YAP+QCLAYWLELV++
Sbjct: 98  FMCLGFYHQLPIDTETIRHLKQVHGIQYCTKKTVGEDVKQIYDTYAPYQCLAYWLELVQY 157

Query: 121 YESKFGKLSELCSLDYHKISGTTLQL 145
           YE+KFGKLSEL S DYHKISG+TL L
Sbjct: 158 YETKFGKLSELSSFDYHKISGSTLHL 182

[Close]

BLAST of Pay0020320 vs. NCBI nr
Match: XP_022156993.1 (uncharacterized protein LOC111023822 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50
Identity = 100/141 (70.92%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 1   MGVELLKEHCLGYRAGYIVDFARRVKNGKIDLQRLEVQNPNYYFPKIKGFGPFATANILM 60
           M V LL++H +GYRA YI+D A+RV+NGKIDLQ++E       FPKIKGFGPF TAN+ M
Sbjct: 197 MSVLLLQKHFIGYRAVYIIDLAQRVQNGKIDLQKIE---RALSFPKIKGFGPFTTANVFM 256

Query: 61  CLGFYRQLPIDTETIRHLKQVHGIQFCNNKTVREDVKLIYDKYAPFQCLAYWLELVEFYE 120
           CLG Y +LPIDTETIRHLKQVHG Q CN KT  E VK +YDKYAPFQCLAYW+ELVE+YE
Sbjct: 257 CLGLYDRLPIDTETIRHLKQVHGRQDCNMKTAEEAVKDVYDKYAPFQCLAYWMELVEYYE 316

Query: 121 SKFGKLSELCSLDYHKISGTT 142
           S+FGKLSEL   DY KISGTT
Sbjct: 317 SRFGKLSELGWHDYKKISGTT 334

The following BLAST results are available for this feature:

BLAST of Pay0020320 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0020320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVT0	1.9e-80	100.00	DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00880...	[more]
A0A1S3CCY8	1.9e-80	100.00	uncharacterized protein LOC103499397 OS=Cucumis melo OX=3656 GN=LOC103499397 PE=...	[more]
A0A6J1GJ25	2.6e-58	76.03	uncharacterized protein LOC111454659 OS=Cucurbita moschata OX=3662 GN=LOC1114546...	[more]
A0A6J1DS88	2.0e-50	70.92	uncharacterized protein LOC111023822 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A061FC08	1.5e-37	53.85	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_033523 PE=4 SV=1	[more]

BLAST of Pay0020320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460619.1	3.9e-80	100.00	PREDICTED: uncharacterized protein LOC103499397 [Cucumis melo] >KAA0054220.1 DNA...	[more]
KAG6585875.1	5.5e-58	76.03	hypothetical protein SDJN03_18608, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022951918.1	5.5e-58	76.03	uncharacterized protein LOC111454659 [Cucurbita moschata]	[more]
XP_023521143.1	9.3e-58	76.03	uncharacterized protein LOC111784765 [Cucurbita pepo subsp. pepo]	[more]
XP_022156993.1	4.2e-50	70.92	uncharacterized protein LOC111023822 [Momordica charantia]	[more]

BLAST of Pay0020320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.30	Hypothetical protein; domain 2	coord: 1..63 e-value: 8.9E-6 score: 27.8
None	No IPR available	PANTHER	PTHR10242:SF7	BNAC06G12980D PROTEIN	coord: 5..141
None	No IPR available	PANTHER	PTHR10242	8-OXOGUANINE DNA GLYCOSYLASE	coord: 5..141
IPR011257	DNA glycosylase	SUPERFAMILY	48150	DNA-glycosylase	coord: 7..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0020320.1	Pay0020320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0006281	DNA repair
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0034039	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
molecular_function	GO:0003824	catalytic activity