Pay0020113 (gene) Melon (Payzawat) v1

Overview
NamePay0020113
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTrafficking protein particle complex subunit
Locationchr09: 14753155 .. 14754300 (-)
RNA-Seq ExpressionPay0020113
SyntenyPay0020113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTTCGGATATCCTTAAACAGCCACCAAAATCATGTGTGGACTACGAGAAGTTCAATACGTCAAACCAAGACTCAAGTTTGGCTGGTTCTCATGCATTGGAAATTGAGGTAACCACCTTAAAATTGAAGATAACAATTAAGTTGAACTAACTACTTGAGACATAATAACATCCAACTTTCCTGAGATAATAGCCAAGGGCAAAGGCAACAAGTTTCTTGACTGATGTATAAATCCATCATTTCAAGCTTCATGAACTTGGGAAGATGGTCGGGTGCTTAGAACATTGGAGGAAAAAAAACGCCAAAGACTAATAGATAGCATAAATGTTTGTCAGATATATATAGGAAAGGAAATGTGTCACTAAAAAATCCGAGTTACAAACAAACTTCACAAGTTGTTAGGTGATATAATTGTTGTTTTCGATTGTTTTGCTAAGTAGAAGGAGGGTCATTATATCCAGTTGTAAGGTGATATAACAATTGGTTTGGATTATTTTGCTAAGTAAATATGTGAGAATGAAGTTGAATTTCAAAACTTTTTAGTTATTTGACGAAGTACTTTTTTCATACTCTCTCTCATACGTTCACAAATTTATATGTACAACTTATAAAGAATAGCAACGATATTATTTAGGAATAGTAACATGAATTTTGTCCTTTCTTAAGTTTTTTAATTGCACATTAGAATTGTTATCTCGAAGTTTGATGGCTTTGAGGTAAACTGAATCAGGTTGGAGGATGTGGGCTATGCAGTTGGTGCTCGAGTATTGGAACTTTTTTGTCACTGAGAGAAGGTATTGAATCTTATGTTAAAAGCTAATTGTCTTTTACATTTTTAATTTGAACCACCACATTTTGGTTTTCCTGCTGATGTTTGTTTTATGTTCTCAGGATTTTATTTTTGGTTTAAAACACATTGATAGATACTCTAATCCTTGGTTTTAGGATGGTAGATTTTCATTTGGATCTATTTTCGTTCTTTTGAATTTACTTTATCATTTAAGTTAATGTTCATATCTGCTTTATGCTTCTTTGTTCTCACAGGGAAATAGACGAGAGACACAATTATTAGGCATTCCGTCATTTGTACACACCACAATTTGGAAGGTTTTGTTTGGAAAGGTGAATACTTGCATTTGA

mRNA sequence

ATGCCATTTTCGGATATCCTTAAACAGCCACCAAAATCATGTGTGGACTACGAGAAGTTCAATACGTCAAACCAAGACTCAAGTTTGGCTGGTTCTCATGCATTGGAAATTGAGGGAAATAGACGAGAGACACAATTATTAGGCATTCCGTCATTTGTACACACCACAATTTGGAAGGTTTTGTTTGGAAAGGTGAATACTTGCATTTGA

Coding sequence (CDS)

ATGCCATTTTCGGATATCCTTAAACAGCCACCAAAATCATGTGTGGACTACGAGAAGTTCAATACGTCAAACCAAGACTCAAGTTTGGCTGGTTCTCATGCATTGGAAATTGAGGGAAATAGACGAGAGACACAATTATTAGGCATTCCGTCATTTGTACACACCACAATTTGGAAGGTTTTGTTTGGAAAGGTGAATACTTGCATTTGA

Protein sequence

MPFSDILKQPPKSCVDYEKFNTSNQDSSLAGSHALEIEGNRRETQLLGIPSFVHTTIWKVLFGKVNTCI
Homology
[Close]
BLAST of Pay0020113 vs. ExPASy Swiss-Prot
Match: Q54YG5 (Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=trappc5 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 38 EGNRRETQLLGIPSFVHTTIWKVLFGK 65
          + ++RET+LLGI SF+HTT+WK LFGK
Sbjct: 70 KNSKRETKLLGILSFIHTTVWKSLFGK 96

[Close]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match: A0A1U8I6T7 (Trafficking protein particle complex subunit OS=Gossypium hirsutum OX=3635 GN=LOC107893425 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match: A0A5D2E2L8 (Trafficking protein particle complex subunit OS=Gossypium darwinii OX=34276 GN=ES288_A13G218600v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match: A0A6P4MN83 (Trafficking protein particle complex subunit OS=Gossypium arboreum OX=29729 GN=LOC108461337 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTEVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match: A0A5J5T4V2 (Trafficking protein particle complex subunit OS=Gossypium barbadense OX=3634 GN=ES319_A13G205400v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match: A0A5D2WKY8 (Trafficking protein particle complex subunit OS=Gossypium mustelinum OX=34275 GN=E1A91_A13G215600v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. NCBI nr
Match: KHG19188.1 (Trafficking particle complex subunit 5 [Gossypium arboreum])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTEVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. NCBI nr
Match: XP_017616645.1 (PREDICTED: trafficking protein particle complex subunit 5-like [Gossypium arboreum] >XP_017616646.1 PREDICTED: trafficking protein particle complex subunit 5-like [Gossypium arboreum])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTEVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. NCBI nr
Match: XP_012465138.1 (PREDICTED: trafficking protein particle complex subunit 5-like [Gossypium raimondii] >KJB82679.1 hypothetical protein B456_013G217200 [Gossypium raimondii])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCQRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. NCBI nr
Match: XP_016668033.1 (trafficking protein particle complex subunit 5 [Gossypium hirsutum] >XP_016673897.1 trafficking protein particle complex subunit 5 [Gossypium hirsutum] >KAB2049843.1 hypothetical protein ES319_A13G205400v1 [Gossypium barbadense] >TYG87480.1 hypothetical protein ES288_A13G218600v1 [Gossypium darwinii] >TYH35981.1 hypothetical protein ES332_D13G232900v1 [Gossypium tomentosum] >TYI48100.1 hypothetical protein E1A91_D13G222800v1 [Gossypium mustelinum] >KAB2049844.1 hypothetical protein ES319_A13G205400v1 [Gossypium barbadense])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. NCBI nr
Match: PPR98165.1 (hypothetical protein GOBAR_AA22487 [Gossypium barbadense])

HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +  T  +D+  A G+  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNISELETRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

[Close]
BLAST of Pay0020113 vs. TAIR 10
Match: AT5G58030.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 3   FSDILKQPPKSCVDYEKFNTSNQDSSLA-GSHALEI-----EGNRRETQLLGIPSFVHTT 62
           FS++++       +  +     +D+  A GS  LE+     +GNRRET+LLGI SFVH+T
Sbjct: 34  FSELVQYNQTQVDNIAELERRLEDAGYAVGSRVLELLCNREKGNRRETRLLGILSFVHST 93

Query: 63  IWKVLFGKV 66
           +WKVLFGKV
Sbjct: 94  VWKVLFGKV 102

The following BLAST results are available for this feature:
BLAST of Pay0020113 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54YG52.9e-0466.67Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum OX=44... [more]
BLAST of Pay0020113 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1U8I6T72.8e-0544.93Trafficking protein particle complex subunit OS=Gossypium hirsutum OX=3635 GN=LO... [more]
A0A5D2E2L82.8e-0544.93Trafficking protein particle complex subunit OS=Gossypium darwinii OX=34276 GN=E... [more]
A0A6P4MN832.8e-0544.93Trafficking protein particle complex subunit OS=Gossypium arboreum OX=29729 GN=L... [more]
A0A5J5T4V22.8e-0544.93Trafficking protein particle complex subunit OS=Gossypium barbadense OX=3634 GN=... [more]
A0A5D2WKY82.8e-0544.93Trafficking protein particle complex subunit OS=Gossypium mustelinum OX=34275 GN... [more]
BLAST of Pay0020113 vs. NCBI nr
Match NameE-valueIdentityDescription
KHG19188.15.7e-0544.93Trafficking particle complex subunit 5 [Gossypium arboreum][more]
XP_017616645.15.7e-0544.93PREDICTED: trafficking protein particle complex subunit 5-like [Gossypium arbore... [more]
XP_012465138.15.7e-0544.93PREDICTED: trafficking protein particle complex subunit 5-like [Gossypium raimon... [more]
XP_016668033.15.7e-0544.93trafficking protein particle complex subunit 5 [Gossypium hirsutum] >XP_01667389... [more]
PPR98165.15.7e-0544.93hypothetical protein GOBAR_AA22487 [Gossypium barbadense][more]
BLAST of Pay0020113 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58030.11.5e-0844.93Transport protein particle (TRAPP) component [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0020113.1Pay0020113.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0030008 TRAPP complex