Pay0020048 (gene) Melon (Payzawat) v1

Overview
NamePay0020048
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Locationchr10: 1127512 .. 1130005 (-)
RNA-Seq ExpressionPay0020048
SyntenyPay0020048
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCCGCCTCTTCTCAGTTAGTCACTTGAAATTCTCAATCTCTCTCTCTCTCTCTCAATCGTGCAAGGAAGAATCATCGTCTCACAGGTACGCGTTAGAAATGTTTCTGAGCCACCTGATTTAGGGTTTGAGACTTTCTGCTACTTAGATCGTTCCGTTATGTAACAACTCGAACTTCTTCTATATTGTACGTAAGCTAGTTGGCGTGATAATCTTCTGTGAAATTGATCGAAATGTTTAATTTGATCGATTGTAATCTTCTTCGCACAAAATTACAGTGTAATTGATTGCTGTTCTCGTTGTAGTTGTATGTTATGGTCGCCCCATATTAGCAATGGAAATTAAAATCGGTTTGCCTACAAGCCTTTTTCCGTGTTTGTTTCTTTTGAAGTTGGATTCTATTTCTGCATTTTTGCTATCGATTATTACTTTTATGAGTCGCTTCTTGTATAATTCTGTTATACGCAACGCCATGAGTTGAACAGAGTTACTACAGGTCATGATCTCAATTCTCTGTTGTGCTAAATGTTATAGGTGCATCAAGTAGTTTGTTCCTGATGTTTTATCATTGAGACTAAACGATGATGTTTATTTATTTGGTCAAAGACATTTATCTTATGTGGAATAGAGTTCTTAATTTGCTTTCCGACGCTTTTGCTTTCTCCCTTGCATGGGAGTGCTATCAGATTAGATTTATGAAGGGGAAATCCCTTTATAATTATAATCTAAACATTGAACTTGTATCAATTCAAGCCTTTAACTTTGAACATTGAATCAATTTAGACCTTTCCAATTAGAATTAGTTATAGTACTGTTAATGCATATTTTTCATAATTACATGAGACTTTTCATTAAATTTAAGTTATCCTTTCATCTATTCATTTTTTCTAATTCTTCATTTAGAAAGCATTACCTAGCTACTTTGGTAATCTGTTGAATGATATTATTTAGATGATTTTGAACGTTTTAAATGGATGTAAAAATAGCTATTGATTACTAGTAATTGATTTGAATTGATTCATTGTTTAGATTTTAAATTGATTCAGATATAGTTTGAGGTTTTAATGATACAATCTCCAAAGTTTAAGGGTAAAACTATAAACTGGTTTTTGCCTAGATTTATTCAATTTGTAAGTGTAGACTACACATGTTTCCAGTTAATTTAGTCTGGTTTGAATATTATACTGTCATGATCTTATCACACTAACTGTATAATCCTATGCATCATGCAATTCGTCGTTGTTGATTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTTCCTCACATGAATTTCGTAGAGGTAGTTGGTATTGCTCAAAGCAACAAGACCATCAACGTTGAACATTGGACCGACTTTGGAACCACTTTTGGTATGTACTATAACCATTTCTTTATGTTATCCATATAAGCCACAGGTAATAAATTATCATGGGTGATAAAAAAAGAGACATAGTTTTACTAACCAACTAAAAGTCATAAGTTCAAAGAGTCACATGTATATCTCACTCTTGCCAATGGGTTTGAAAGCTCAGCAAATGCCCTTTGTTCTTTTCTCTTATCCCTCGTAAATGCTAGATTACATGAACTGTTTGGGATTCGGTCATAAACATATTAGACAAAGAATTTTTTTTTCTTTTTGTATATTGACAAAGATTATTTTTTTCTTTTATTCCATTGAGAATCATCGTGGAATTACCGAAAGGGAGAATAGGTTTTTTTGTGGCGTTTCGCCTTCCCTGACTTGCCATCCTCCGTTAAGGAGGAGCAGTGTTATACCGAATTTTGTTTGGGCTTTAATGATTTGTTTTTTAAATGTTCATCGACTAAACTTGAAATTTACCTCTTTTTTCAGATACTGAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGGCAAGAAGCTAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTTGTAACTCACGTGGGAGTCTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCTGTGTAATGTACCAAGCTATAAGCTAGGCGCGAAGTATGGAATTTTCCTGGAATTTAAAAGGGTTCCAATTTCTCAAGTAGTTGATTCACATATTTTTCATTGAGAAAAACCTACGTGTAGTTGGGTGCACTTGAACTACACTCATCTTTTGTATAATTCGACTACCATTCAATTAGAATGTGTCACGTGTATTTTTTCTTTCATTTCTGTGGTAGAGAGAAGAGAAGTTAGATTGTACTATTTCGTTGTTCTTTTTCATTTGTAGATCATACTACCCAATTAATTTTTAATTTTAGTTTCAT

mRNA sequence

ATTCCCGCCTCTTCTCAGTTAGTCACTTGAAATTCTCAATCTCTCTCTCTCTCTCTCAATCGTGCAAGGAAGAATCATCGTCTCACAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTTCCTCACATGAATTTCGTAGAGGTAGTTGGTATTGCTCAAAGCAACAAGACCATCAACGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACAGCATGGCAAGAAGCTAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTTGTAACTCACGTGGGAGTCTTGAACTGCTAATCTATTAAAAGAACTCCTGTTTTGGTCTGTGTAATGTACCAAGCTATAAGCTAGGCGCGAAGTATGGAATTTTCCTGGAATTTAAAAGGGTTCCAATTTCTCAAGTAGTTGATTCACATATTTTTCATTGAGAAAAACCTACGTGTAGTTGGGTGCACTTGAACTACACTCATCTTTTGTATAATTCGACTACCATTCAATTAGAATGTGTCACGTGTATTTTTTCTTTCATTTCTGTGGTAGAGAGAAGAGAAGTTAGATTGTACTATTTCGTTGTTCTTTTTCATTTGTAGATCATACTACCCAATTAATTTTTAATTTTAGTTTCAT

Coding sequence (CDS)

ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGTGATGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTTCCTCACATGAATTTCGTAGAGGTAGTTGGTATTGCTCAAAGCAACAAGACCATCAACGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG

Protein sequence

MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI
Homology
[Close]
BLAST of Pay0020048 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 62/106 (58.49%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           +EV+GIA+++ TI  E WT+FG +FD ++YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Pay0020048 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-27
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Pay0020048 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-26
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS PA FVNGE+L M  GR++R VVQ  + +GG++ G+STD  QLTI G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VE++GIA+ N+ I  E  TDFG  FD   +N LC+LANG+ + LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.8e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.8e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.3e-51
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.5e-46
Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA+ NK INVEHWTDFGT FD +SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVN ELL +H GRKIRAV QV +SDGG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEV+GIA+SNK INVEH TDFG TFD +SYNQLCQLANGEF+S+F+
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

[Close]
BLAST of Pay0020048 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 7.8e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 4.8e-51
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA+SNKTI VE WTDFGTTFDT SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 6.9e-50
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTI GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA++NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRSLFI
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]
BLAST of Pay0020048 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA+ NK INVEHWTDFGTTFD +SYNQLCQLANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]
BLAST of Pay0020048 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 229 MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 288

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           VEVVGIA+ NK INVEHWTDFG TFD +SYNQLCQLANGEFRSLF+
Sbjct: 289 VEVVGIAEGNKIINVEHWTDFGNTFDAQSYNQLCQLANGEFRSLFL 334

[Close]
BLAST of Pay0020048 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 137.1 bits (344), Expect = 8.1e-33
Identity = 62/106 (58.49%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+SD G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           +EV+GIA+++ TI  E WT+FG +FD ++YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Pay0020048 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-29
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Pay0020048 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-29
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S+ G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 107
           ++EV+GIA+S+  I  E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:
BLAST of Pay0020048 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG71.1e-3158.49Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK11.0e-2754.21Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK94.2e-2650.94Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Pay0020048 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGM83.8e-54100.00replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU423.8e-54100.00Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KRF22.3e-5196.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A6J1JC998.5e-4685.85replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X13.3e-4279.25replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Pay0020048 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446755.17.8e-54100.00PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
XP_004135037.14.8e-5196.23replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
XP_038893019.16.9e-5094.34replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_023539791.12.1e-4686.79replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
KAG6601223.12.1e-4686.79Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... [more]
BLAST of Pay0020048 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.18.1e-3358.49Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.17.1e-2954.21Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.27.1e-2954.21Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 1..99
e-value: 3.9E-19
score: 68.9
NoneNo IPR availableGENE3D2.40.50.140coord: 2..106
e-value: 1.1E-19
score: 72.2
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..106
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 1..106
NoneNo IPR availableCDDcd04479RPA3coord: 6..105
e-value: 5.00373E-25
score: 88.4741
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0020048.1Pay0020048.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding