Pay0019145 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019145
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Selenoprotein H
Location	chr06: 24854390 .. 24854713 (+)
RNA-Seq Expression	Pay0019145
Synteny	Pay0019145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGGGTGATTCAGAGTTTTACTCAACTTATGACAAACTCCAAGGTCAATTTGAATGTCATGAAGTTTTCAAAGTGTAAGAAGGTGAAATGTGCTCTGAAGAATGGGAAGGTAGAGGAGGTTGAAAATAAGGAAACGAAAATTGATGCTAGCTTAGAGGAACTTGACAAGGATGCTAAGAGTACAACGATTGTGATTGAACATTACAAACAATGCCAATCATTCAAGAAAAGGGCCATTCACGTGAAAACTAGTCTAAAGAATGGTGTTCTTTGGATCAATGTGTTACTTAACCCTGATAAGCCAAGAAGGGTTGCTTAG

mRNA sequence

ATGTCCAGGGTGATTCAGAGTTTTACTCAACTTATGACAAACTCCAAGGTCAATTTGAATGTCATGAAGTTTTCAAAGTGTAAGAAGGTGAAATGTGCTCTGAAGAATGGGAAGGTAGAGGAGGTTGAAAATAAGGAAACGAAAATTGATGCTAGCTTAGAGGAACTTGACAAGGATGCTAAGAGTACAACGATTGTGATTGAACATTACAAACAATGCCAATCATTCAAGAAAAGGGCCATTCACGTGAAAACTAGTCTAAAGAATGGTGTTCTTTGGATCAATGTGTTACTTAACCCTGATAAGCCAAGAAGGGTTGCTTAG

Coding sequence (CDS)

ATGTCCAGGGTGATTCAGAGTTTTACTCAACTTATGACAAACTCCAAGGTCAATTTGAATGTCATGAAGTTTTCAAAGTGTAAGAAGGTGAAATGTGCTCTGAAGAATGGGAAGGTAGAGGAGGTTGAAAATAAGGAAACGAAAATTGATGCTAGCTTAGAGGAACTTGACAAGGATGCTAAGAGTACAACGATTGTGATTGAACATTACAAACAATGCCAATCATTCAAGAAAAGGGCCATTCACGTGAAAACTAGTCTAAAGAATGGTGTTCTTTGGATCAATGTGTTACTTAACCCTGATAAGCCAAGAAGGGTTGCTTAG

Protein sequence

MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDAKSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA

Homology

[Close]

BLAST of Pay0019145 vs. ExPASy TrEMBL
Match: A0A1S3BTN8 (uncharacterized protein LOC103493406 OS=Cucumis melo OX=3656 GN=LOC103493406 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60
           MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA
Sbjct: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60

Query: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 108
           KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA
Sbjct: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 107

[Close]

BLAST of Pay0019145 vs. ExPASy TrEMBL
Match: A0A5A7V1X0 (Selenoprotein H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00770 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60
           MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCAL+NGKVEEVENKETKIDASLEELDKDA
Sbjct: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDA 60

Query: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 108
           KSTTIVIEHYKQCQSFKKRAIHVK SLKNGVL INVLLNPDKPRRVA
Sbjct: 61  KSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPDKPRRVA 107

[Close]

BLAST of Pay0019145 vs. ExPASy TrEMBL
Match: A0A1S3BBW1 (selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.4e-25
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SRV +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  LE+ DKDA
Sbjct: 24  SRVTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLEKPDKDA 83

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDKPRR
Sbjct: 84  KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRR 128

[Close]

BLAST of Pay0019145 vs. ExPASy TrEMBL
Match: A0A0A0LPC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SR+ +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  L +LDKDA
Sbjct: 24  SRLTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDA 83

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDKPRR
Sbjct: 84  KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRR 128

[Close]

BLAST of Pay0019145 vs. ExPASy TrEMBL
Match: A0A5A7VBJ3 (Selenoprotein H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003110 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-23
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SRV +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  LE+ DKDA
Sbjct: 98  SRVTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLEKHDKDA 157

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDK 103
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDK
Sbjct: 158 KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDK 199

[Close]

BLAST of Pay0019145 vs. NCBI nr
Match: XP_008452347.1 (PREDICTED: uncharacterized protein LOC103493406 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 6.9e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60
           MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA
Sbjct: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60

Query: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 108
           KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA
Sbjct: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 107

[Close]

BLAST of Pay0019145 vs. NCBI nr
Match: KAA0060486.1 (selenoprotein H [Cucumis melo var. makuwa] >TYK18571.1 selenoprotein H [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEVENKETKIDASLEELDKDA 60
           MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCAL+NGKVEEVENKETKIDASLEELDKDA
Sbjct: 1   MSRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALENGKVEEVENKETKIDASLEELDKDA 60

Query: 61  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRRVA 108
           KSTTIVIEHYKQCQSFKKRAIHVK SLKNGVL INVLLNPDKPRRVA
Sbjct: 61  KSTTIVIEHYKQCQSFKKRAIHVKISLKNGVLGINVLLNPDKPRRVA 107

[Close]

BLAST of Pay0019145 vs. NCBI nr
Match: XP_008445096.1 (PREDICTED: selenoprotein H [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SRV +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  LE+ DKDA
Sbjct: 24  SRVTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLEKPDKDA 83

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDKPRR
Sbjct: 84  KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRR 128

[Close]

BLAST of Pay0019145 vs. NCBI nr
Match: XP_004138763.1 (selenoprotein H [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SR+ +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  L +LDKDA
Sbjct: 24  SRLTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDA 83

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDKPRR
Sbjct: 84  KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRR 128

[Close]

BLAST of Pay0019145 vs. NCBI nr
Match: KAE8652181.1 (hypothetical protein Csa_022241 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 69/105 (65.71%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 2   SRVIQSFTQLMTNSKVNLNVMKFSKCKKVKCALK-NGKVEEVENKETKIDASLEELDKDA 61
           SR+ +S  +L  NSK +L V +  K KK K A K NGKVEEVENKE K+D  L +LDKDA
Sbjct: 100 SRLTRSSARLAANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDA 159

Query: 62  KSTTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
           KS T+VIEH KQCQSFKKRAI V+T L+NGV  I VLLNPDKPRR
Sbjct: 160 KSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRR 204

[Close]

BLAST of Pay0019145 vs. TAIR 10
Match: AT2G24440.1 (selenium binding )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 7   SFTQLMTNSKVNLNVMKFSKCKKVKCALKNGKVEEV-----ENKETKIDASLEELDKDAK 66
           S ++LM          K +K K V  A K  K EEV     + +E   DA+ +E D D+ 
Sbjct: 37  SSSKLMKIESPEKKKRKTTKAKNVGAAKKKVKKEEVAVKIEKEEEEDDDAAEKEEDDDSD 96

Query: 67  STTIVIEHYKQCQSFKKRAIHVKTSLKNGVLWINVLLNPDKPRR 106
              IVIEH KQC+SFK+RA  VK  L+  V  I V +NPDKPRR
Sbjct: 97  KKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRR 140

[Close]

BLAST of Pay0019145 vs. TAIR 10
Match: AT4G31360.1 (selenium binding )

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 33  ALKNGKVEEVENKETKIDASLEELD---KDAKSTTIVIEHYKQCQSFKKRAIHVKTSLKN 92
           A K  K EEVE  E  ++  +E+ +   +D   T IVIEH KQC +FK RAI VK +L+ 
Sbjct: 68  AKKGKKEEEVEEPEEAVEEEVEKEEPEVEDPTRTKIVIEHCKQCNAFKTRAIQVKEALEG 127

Query: 93  GVLWINVLLNPDKPRR 106
            V  + V LNP+KPRR
Sbjct: 128 AVPGVTVSLNPEKPRR 143

The following BLAST results are available for this feature:

BLAST of Pay0019145 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0019145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTN8	3.4e-50	100.00	uncharacterized protein LOC103493406 OS=Cucumis melo OX=3656 GN=LOC103493406 PE=...	[more]
A0A5A7V1X0	1.6e-47	97.20	Selenoprotein H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0077...	[more]
A0A1S3BBW1	6.4e-25	66.67	selenoprotein H OS=Cucumis melo OX=3656 GN=LOC103488240 PE=4 SV=1	[more]
A0A0A0LPC9	1.4e-24	65.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379100 PE=4 SV=1	[more]
A0A5A7VBJ3	6.0e-23	65.69	Selenoprotein H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00311...	[more]

BLAST of Pay0019145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452347.1	6.9e-50	100.00	PREDICTED: uncharacterized protein LOC103493406 [Cucumis melo]	[more]
KAA0060486.1	3.2e-47	97.20	selenoprotein H [Cucumis melo var. makuwa] >TYK18571.1 selenoprotein H [Cucumis ...	[more]
XP_008445096.1	1.3e-24	66.67	PREDICTED: selenoprotein H [Cucumis melo]	[more]
XP_004138763.1	2.9e-24	65.71	selenoprotein H [Cucumis sativus]	[more]
KAE8652181.1	2.9e-24	65.71	hypothetical protein Csa_022241 [Cucumis sativus]	[more]

BLAST of Pay0019145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24440.1	1.5e-10	43.27	selenium binding	[more]
AT4G31360.1	2.6e-10	47.37	selenium binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	PANTHER	PTHR33638	SELENOPROTEIN H	coord: 36..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019145.1	Pay0019145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus