Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTCGCAAGAGTAGAAATTGAGAAGTTCGATGGAAAGGGAGATTTTGTTCTTTGTAAGGACAAAATCAAGGCTTTGCTAGGTTAGCAAAAGACTCCTAAAGCCATTTTAAAGCCATTTTAAATCCTTCAGAACTTTCAGCAACACTCACAACATCACAAAAAGAAGACATGGAGTTAAATGTCTATAGTATACTAATCCTAAATTTAAGTGACAGTGTTATAAGGCAAGTAATAGAAGAAGGTACAACATACAAAATCTGGAAGAAATTAGAAAGTTCGTATGCTACTAAAAATCTCTCTAATAAAATTTGCCTAAGGGAGAAATTCTTTACATACAAGATGGATCCTTCAAAAACCTTGACAGACAACATAGATGAGTTCAAGAAGATTGTGTTAGAATTCAAGAGTCTTGAGGACAAACTTAGTGATGAAAAAAACTCAGTGATTGTGTTAGAAGCTTATGTTCTCATAAATGACCCAAACCTTACAAAGAGGTAA
mRNA sequence
ATGGCAGTCGCAAGAGTAGAAATTGAGAAGTTCGATGGAAAGGGAGATTTTGTTCTTTGTAAGGACAAAATCAAGGCTTTGCTAGCCATTTTAAATCCTTCAGAACTTTCAGCAACACTCACAACATCACAAAAAGAAGACATGGAGTTAAATGTCTATAGTATACTAATCCTAAATTTAAGTGACAGTGTTATAAGGCAAGTAATAGAAGAAGGTACAACATACAAAATCTGGAAGAAATTAGAAAGTTCGTATGCTACTAAAAATCTCTCTAATAAAATTTGCCTAAGGGAGAAATTCTTTACATACAAGATGGATCCTTCAAAAACCTTGACAGACAACATAGATGAGTTCAAGAAGATTGTGTTAGAATTCAAGAGTCTTGAGGACAAACTTAGTGATGAAAAAAACTCAGTGATTGTGTTAGAAGCTTATGTTCTCATAAATGACCCAAACCTTACAAAGAGGTAA
Coding sequence (CDS)
ATGGCAGTCGCAAGAGTAGAAATTGAGAAGTTCGATGGAAAGGGAGATTTTGTTCTTTGTAAGGACAAAATCAAGGCTTTGCTAGCCATTTTAAATCCTTCAGAACTTTCAGCAACACTCACAACATCACAAAAAGAAGACATGGAGTTAAATGTCTATAGTATACTAATCCTAAATTTAAGTGACAGTGTTATAAGGCAAGTAATAGAAGAAGGTACAACATACAAAATCTGGAAGAAATTAGAAAGTTCGTATGCTACTAAAAATCTCTCTAATAAAATTTGCCTAAGGGAGAAATTCTTTACATACAAGATGGATCCTTCAAAAACCTTGACAGACAACATAGATGAGTTCAAGAAGATTGTGTTAGAATTCAAGAGTCTTGAGGACAAACTTAGTGATGAAAAAAACTCAGTGATTGTGTTAGAAGCTTATGTTCTCATAAATGACCCAAACCTTACAAAGAGGTAA
Protein sequence
MAVARVEIEKFDGKGDFVLCKDKIKALLAILNPSELSATLTTSQKEDMELNVYSILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTDNIDEFKKIVLEFKSLEDKLSDEKNSVIVLEAYVLINDPNLTKR
Homology
BLAST of Pay0019073 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 38/151 (25.17%), Postives = 79/151 (52.32%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL------AILN-PSELSATLTTSQKEDMELNVY 60
M+ + E+ KF+G F + +++ LL +L+ S+ T+ D++
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
S + L+LSD V+ +I+E T IW +LES Y +K L+NK+ L+++ + M
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
+++ F ++ + +L K+ +E ++++L +
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNS 151
BLAST of Pay0019073 vs. ExPASy TrEMBL
Match:
A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 7.3e-30
Identity = 70/151 (46.36%), Postives = 108/151 (71.52%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL-------AILNPSELSATLTTSQKEDMELNVY 60
M +++EIEKFDGKGDF + K K+KA+L A+ + S L T+ S+KE++ Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
S+LILNL+D+V+RQV E+ T K+W KL+S Y TK LSNKI L+E+ F +KMD +K+L D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
N+D+FK+I + ++++K++DE ++I+L +
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNS 151
BLAST of Pay0019073 vs. ExPASy TrEMBL
Match:
A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 69/151 (45.70%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL-------AILNPSELSATLTTSQKEDMELNVY 60
M +++EIEKFDGKGDF + K K+KA+L + + S L T+ S+KE++ Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
S+LILNL+D+V+RQV E+ T K+W KL+S Y TK LSNKI L+E+ F +KMD +K+L D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
N+D+FK+I + ++++K++DE ++I+L +
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNS 151
BLAST of Pay0019073 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 3.6e-29
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALLA------ILNPSELSATLTTSQKEDMELNVYS 60
MA R E+ KF+G GDF L + KI+A+L IL+ L +T S+K DM+ YS
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
Query: 61 ILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTDN 120
++L LSD V+R V E TT ++WKKLES Y TK+L NKI ++EKFF YKMD SK+L +N
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEEN 120
Query: 121 IDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
+DEF+KIV++ ++ +K+SDE +VI+L +
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAVILLNS 150
BLAST of Pay0019073 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 8.1e-29
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALLA------ILNPSELSATLTTSQKEDMELNVYS 60
MA R E+ KF+G GDF L + KI+A+L IL+ L +T S+K DM+ YS
Sbjct: 1 MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
Query: 61 ILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTDN 120
++L LSD V+R V E TT ++WKKLES Y TK+L NKI ++EKFF YKMD SK+L +N
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEEN 120
Query: 121 IDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
+DEF+KIV++ ++ +K+SDE +VI+L +
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAVILLNS 150
BLAST of Pay0019073 vs. ExPASy TrEMBL
Match:
A0A5D3CQJ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17264G00020 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 72/150 (48.00%), Postives = 102/150 (68.00%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALLA------ILNPSELSATLTTSQKEDMELNVYS 60
MA R E+ KF+G GDF L + KI+A+L IL+ L +T S+K DM+ YS
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYS 60
Query: 61 ILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTDN 120
++L LSD V+R V E TT ++WKKLES Y TK+L NKI ++EKFF YKMD SK+L +N
Sbjct: 61 TILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEEN 120
Query: 121 IDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
+DEF+KIV++ ++ +K+SDE + I+L +
Sbjct: 121 LDEFQKIVVDLNNIGEKMSDENQAAILLNS 150
BLAST of Pay0019073 vs. NCBI nr
Match:
XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])
HSP 1 Score: 146.4 bits (368), Expect = 2.1e-31
Identity = 85/156 (54.49%), Postives = 103/156 (66.03%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL-------AILNPSELSATLTTSQKEDMELNVY 60
M++AR E+EKFDGKGDF L K KIKA+L A+LNPS LSAT+T +KED EL Y
Sbjct: 1 MSIARFEVEKFDGKGDFGLWKAKIKAILDQQKAHRALLNPSTLSATMTAQEKEDWELATY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
++ T Y+IW KLE YATK+L +K+ L EKFFT+KMD SKTLT+
Sbjct: 61 ----------------DQETAYRIWTKLEELYATKDLPSKMYLSEKFFTFKMDSSKTLTN 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEAYVLIN 150
N DEFKKIV EFK+L +KLSD+ EAYVL N
Sbjct: 121 NFDEFKKIVAEFKTLGEKLSDKN------EAYVLPN 134
BLAST of Pay0019073 vs. NCBI nr
Match:
XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])
HSP 1 Score: 143.7 bits (361), Expect = 1.4e-30
Identity = 74/156 (47.44%), Postives = 106/156 (67.95%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKA-------LLAILNPSELSATLTTSQKEDMELNVY 60
MA R EIEKFDGK DF L K KIKA LLAI +P++ TL+ + KE +ELN Y
Sbjct: 1 MATIRYEIEKFDGKIDFELQKAKIKAVLGQQKTLLAITDPTKYPETLSEADKETIELNAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
+ILN++DS++RQ++++ T Y +W KL Y K+L NK RE+FFTYK+D +K+LTD
Sbjct: 61 GTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNKDLPNKAFFRERFFTYKIDAAKSLTD 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEAYVLIN 150
N++EFK++ EF+S+ D + +E EA++L+N
Sbjct: 121 NLNEFKRLSSEFRSIRDNIREEN------EAFILLN 150
BLAST of Pay0019073 vs. NCBI nr
Match:
XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])
HSP 1 Score: 141.7 bits (356), Expect = 5.2e-30
Identity = 75/156 (48.08%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKI-------KALLAILNPSELSATLTTSQKEDMELNVY 60
MA + EIEKFD K DF L K KI KALLAI +PS+ TL+ ++KE +E N Y
Sbjct: 1 MATTKYEIEKFDEKIDFELRKAKIKAVLGQQKALLAITDPSKYPETLSEAEKETIESNAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
+ILN++DSV+RQ++++ T Y +W KL Y K+ NK LRE+FFTYKMDP+K+LTD
Sbjct: 61 GTIILNVTDSVLRQIMDQPTVYALWNKLNEIYLNKDFPNKNFLRERFFTYKMDPTKSLTD 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEAYVLIN 150
N++EFK++ EF+S+ D + +E EA++L N
Sbjct: 121 NLNEFKRLSSEFRSIGDNIGEEN------EAFILFN 150
BLAST of Pay0019073 vs. NCBI nr
Match:
PON96088.1 (hypothetical protein TorRG33x02_080180, partial [Trema orientale])
HSP 1 Score: 140.2 bits (352), Expect = 1.5e-29
Identity = 70/151 (46.36%), Postives = 108/151 (71.52%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL-------AILNPSELSATLTTSQKEDMELNVY 60
M +++EIEKFDGKGDF + K K+KA+L A+ + S L T+ S+KE++ Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
S+LILNL+D+V+RQV E+ T K+W KL+S Y TK LSNKI L+E+ F +KMD +K+L D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
N+D+FK+I + ++++K++DE ++I+L +
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNS 151
BLAST of Pay0019073 vs. NCBI nr
Match:
PON64464.1 (hypothetical protein TorRG33x02_273130 [Trema orientale])
HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 69/151 (45.70%), Postives = 107/151 (70.86%), Query Frame = 0
Query: 1 MAVARVEIEKFDGKGDFVLCKDKIKALL-------AILNPSELSATLTTSQKEDMELNVY 60
M +++EIEKFDGKGDF + K K+KA+L + + S L T+ S+KE++ Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAY 60
Query: 61 SILILNLSDSVIRQVIEEGTTYKIWKKLESSYATKNLSNKICLREKFFTYKMDPSKTLTD 120
S+LILNL+D+V+RQV E+ T K+W KL+S Y TK LSNKI L+E+ F +KMD +K+L D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NIDEFKKIVLEFKSLEDKLSDEKNSVIVLEA 145
N+D+FK+I + ++++K++DE ++I+L +
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNS 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 8.1e-10 | 25.17 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A2P5FE65 | 7.3e-30 | 46.36 | Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080... | [more] |
A0A2P5CTT8 | 1.6e-29 | 45.70 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV... | [more] |
A0A5D3DNU1 | 3.6e-29 | 48.67 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7UB25 | 8.1e-29 | 48.67 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
A0A5D3CQJ5 | 1.1e-28 | 48.00 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |
XP_038896323.1 | 2.1e-31 | 54.49 | uncharacterized protein LOC120084587 [Benincasa hispida] | [more] |
XP_038880370.1 | 1.4e-30 | 47.44 | uncharacterized protein LOC120072018 [Benincasa hispida] | [more] |
XP_038887098.1 | 5.2e-30 | 48.08 | uncharacterized protein LOC120077280 [Benincasa hispida] | [more] |
PON96088.1 | 1.5e-29 | 46.36 | hypothetical protein TorRG33x02_080180, partial [Trema orientale] | [more] |
PON64464.1 | 3.4e-29 | 45.70 | hypothetical protein TorRG33x02_273130 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |