Pay0019010 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019010
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02: 7988205 .. 7988813 (-)
RNA-Seq Expression	Pay0019010
Synteny	Pay0019010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTGTATGCTTGTATGTTGACGATTTGATTTATACTAGAAATGATGTTGCCATGCTTGAGAAATTCAAACAGTCAATGATGTTTGAGTTTAACATGTCTGATCTAGGAAAGGTGCATTATTTTCTTAGACTTGAAGTGGTGCAATCTCCATTTGGAATTTGTATTTCACAAAGAAAGTATGTGCAAGATGTTTTGATGAGATTTCAAATGAGTGAATGCAATTCAGTTAGTACACCAGCTGAATTTGGATTAAAATTGCATAAGGATCAGAAAGGAAAAAAGGTGGATAGCACTCTGTATAAACAAATTGTTGGTAGTTTGATGTACATAACAACAACAAGACCTGACATTATGCATTTTGTGAGTTTGATTAGTAGATACATGGAGAATCCAACAAAGATGCATCTTCTTGCTGTCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAAATTATGGATTATTTTACAAGAATGTGGTGAAGTCAGATTTTGTTGGGTTTACTGACAGTGATTATGCAGGTGATATAGATGATAGAAAAAGCACTTCAGGCCATGTCTTTATGCTTAGTTCACAGGTTGTTTCATGGTCATCTAAAAAATAG

mRNA sequence

ATGTTGATTGTATGCTTGTATGTTGACGATTTGATTTATACTAGAAATGATGTTGCCATGCTTGAGAAATTCAAACAGTCAATGATGTTTGAGTTTAACATGTCTGATCTAGGAAAGGTGCATTATTTTCTTAGACTTGAAGTGGTGCAATCTCCATTTGGAATTTGTATTTCACAAAGAAAGTATGTGCAAGATGTTTTGATGAGATTTCAAATGAGTGAATGCAATTCAGTTAGTACACCAGCTGAATTTGGATTAAAATTGCATAAGGATCAGAAAGGAAAAAAGGTGGATAGCACTCTGTATAAACAAATTGTTGGTAGTTTGATGTACATAACAACAACAAGACCTGACATTATGCATTTTGTGAGTTTGATTAGTAGATACATGGAGAATCCAACAAAGATGCATCTTCTTGCTGTCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAAATTATGGATTATTTTACAAGAATGTGGTGAAGTCAGATTTTGTTGGGTTTACTGACAGTGATTATGCAGGTGATATAGATGATAGAAAAAGCACTTCAGGCCATGTCTTTATGCTTAGTTCACAGGTTGTTTCATGGTCATCTAAAAAATAG

Coding sequence (CDS)

ATGTTGATTGTATGCTTGTATGTTGACGATTTGATTTATACTAGAAATGATGTTGCCATGCTTGAGAAATTCAAACAGTCAATGATGTTTGAGTTTAACATGTCTGATCTAGGAAAGGTGCATTATTTTCTTAGACTTGAAGTGGTGCAATCTCCATTTGGAATTTGTATTTCACAAAGAAAGTATGTGCAAGATGTTTTGATGAGATTTCAAATGAGTGAATGCAATTCAGTTAGTACACCAGCTGAATTTGGATTAAAATTGCATAAGGATCAGAAAGGAAAAAAGGTGGATAGCACTCTGTATAAACAAATTGTTGGTAGTTTGATGTACATAACAACAACAAGACCTGACATTATGCATTTTGTGAGTTTGATTAGTAGATACATGGAGAATCCAACAAAGATGCATCTTCTTGCTGTCAAAAGAATTTTTCGGTACTTGCAAGGAACAAAAAATTATGGATTATTTTACAAGAATGTGGTGAAGTCAGATTTTGTTGGGTTTACTGACAGTGATTATGCAGGTGATATAGATGATAGAAAAAGCACTTCAGGCCATGTCTTTATGCTTAGTTCACAGGTTGTTTCATGGTCATCTAAAAAATAG

Protein sequence

MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQRKYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIMHFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDDRKSTSGHVFMLSSQVVSWSSKK

Homology

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BLAST of Pay0019010 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 82/202 (40.59%), Postives = 122/202 (60.40%), Query Frame = 0


Query: 1    MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
            ++ + +YVDD++ T ND  +L     ++   F++ D  ++HYFL +E  + P G+ +SQR
Sbjct: 1144 IVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQR 1203

Query: 61   KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
            +Y+ D+L R  M     V+TP     KL      K  D T Y+ IVGSL Y+  TRPDI 
Sbjct: 1204 RYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDIS 1263

Query: 121  HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
            + V+ +S++M  PT+ HL A+KRI RYL GT N+G+F K         ++D+D+AGD DD
Sbjct: 1264 YAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDD 1323

Query: 181  RKSTSGHVFMLSSQVVSWSSKK 203
              ST+G++  L    +SWSSKK
Sbjct: 1324 YVSTNGYIVYLGHHPISWSSKK 1345

[Close]

BLAST of Pay0019010 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 78/202 (38.61%), Postives = 119/202 (58.91%), Query Frame = 0


Query: 1    MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
            ++ + +YVDD++ T ND  +L+    ++   F++ +   +HYFL +E  + P G+ +SQR
Sbjct: 1127 IIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQR 1186

Query: 61   KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
            +Y  D+L R  M     V+TP     KL      K  D T Y+ IVGSL Y+  TRPD+ 
Sbjct: 1187 RYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLS 1246

Query: 121  HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
            + V+ +S+YM  PT  H  A+KR+ RYL GT ++G+F K         ++D+D+AGD DD
Sbjct: 1247 YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDD 1306

Query: 181  RKSTSGHVFMLSSQVVSWSSKK 203
              ST+G++  L    +SWSSKK
Sbjct: 1307 YVSTNGYIVYLGHHPISWSSKK 1328

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BLAST of Pay0019010 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 87/212 (41.04%), Postives = 122/212 (57.55%), Query Frame = 0


Query: 2    LIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFG--ICISQ 61
            +I+ LYVDD++    D  ++ K K  +   F+M DLG     L +++V+      + +SQ
Sbjct: 1003 IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

Query: 62   RKYVQDVLMRFQMSECNSVSTPAEFGLKLHK-------DQKGKKVDSTLYKQIVGSLMY- 121
             KY++ VL RF M     VSTP    LKL K       ++KG  +    Y   VGSLMY 
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG-NMAKVPYSSAVGSLMYA 1122

Query: 122  ITTTRPDIMHFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFV--GF 181
            +  TRPDI H V ++SR++ENP K H  AVK I RYL+GT    L +     SD +  G+
Sbjct: 1123 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG---SDPILKGY 1182

Query: 182  TDSDYAGDIDDRKSTSGHVFMLSSQVVSWSSK 202
            TD+D AGDID+RKS++G++F  S   +SW SK
Sbjct: 1183 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSK 1210

[Close]

BLAST of Pay0019010 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-30
Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 0


Query: 2   LIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQRK 61
           + + LYVDD++ T +   +L      +   F+M DLG VHYFL +++   P G+ +SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 62  YVQDVLMRFQMSECNSVSTPAEFGLKLHKD-QKGKKVDSTLYKQIVGSLMYITTTRPDIM 121
           Y + +L    M +C  +STP    LKL+      K  D + ++ IVG+L Y+T TRPDI 
Sbjct: 61  YAEQILNNAGMLDCKPMSTP--LPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 120

Query: 122 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 181
           + V+++ + M  PT      +KR+ RY++GT  +GL+     K +   F DSD+AG    
Sbjct: 121 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 180

Query: 182 RKSTSGHVFMLSSQVVSWSSKK 203
           R+ST+G    L   ++SWS+K+
Sbjct: 181 RRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Pay0019010 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-27
Identity = 70/206 (33.98%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 2    LIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQRK 61
            + V LYVDD++    D+  +  FK+ +M +F M+DL ++ +F+ + +      I +SQ  
Sbjct: 1082 IYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSA 1141

Query: 62   YVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVD-STLYKQIVGSLMYI-TTTRPDI 121
            YV+ +L +F M  CN+VSTP     K++ +      D +T  + ++G LMYI   TRPD+
Sbjct: 1142 YVKKILSKFNMENCNAVSTP--LPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDL 1201

Query: 122  MHFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKN--VVKSDFVGFTDSDYAGD 181
               V+++SRY           +KR+ RYL+GT +  L +K     ++  +G+ DSD+AG 
Sbjct: 1202 TTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGS 1261

Query: 182  IDDRKSTSGHVF-MLSSQVVSWSSKK 203
              DRKST+G++F M    ++ W++K+
Sbjct: 1262 EIDRKSTTGYLFKMFDFNLICWNTKR 1285

[Close]

BLAST of Pay0019010 vs. ExPASy TrEMBL
Match: A0A1S4DY19 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991077 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.9e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR
Sbjct: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM
Sbjct: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD
Sbjct: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           RKSTSGHVFMLSSQVVSWSSKK
Sbjct: 181 RKSTSGHVFMLSSQVVSWSSKK 202

[Close]

BLAST of Pay0019010 vs. ExPASy TrEMBL
Match: A0A438I5N6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1909 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.9e-77
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1    MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
            MLIVCLYVDDLI+T ND  M E+FK+SMM EF MSDLG +HYFL +EVVQS  GI ISQ+
Sbjct: 1040 MLIVCLYVDDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDTGIFISQK 1099

Query: 61   KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
            KYV+++L RFQM +CN VSTP +FGLKL+KD  GKKVD+ +YKQIVGSLMY+T TRPDIM
Sbjct: 1100 KYVREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDNIIYKQIVGSLMYLTATRPDIM 1159

Query: 121  HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
            H VSLISRYMENPT++H LA K+I RYLQGTK++GLFYK   +SD +GFTDSDYAGD D+
Sbjct: 1160 HSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDN 1219

Query: 181  RKSTSGHVFMLSSQVVSWSSKK 203
            R+STSG+VFML +  VSWSSKK
Sbjct: 1220 RRSTSGYVFMLGTGAVSWSSKK 1241

[Close]

BLAST of Pay0019010 vs. ExPASy TrEMBL
Match: A0A438IVG3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2919 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76
Identity = 143/202 (70.79%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLI+T ND  M E+FK+SMM EF MSDLG +HYFL +EVVQS  GI ISQ+
Sbjct: 496 MLIVCLYVDDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDIGIFISQK 555

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYV+++L RFQM +CN VSTP +FGLKL+KD  GKKVD+ +YKQIVGSLMY+T TRP+IM
Sbjct: 556 KYVREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDNIIYKQIVGSLMYLTATRPNIM 615

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           H VSLISRYMENPT++H LA KRI RYLQGTK++GLFYK    SD +GFTD+DYAGD D+
Sbjct: 616 HLVSLISRYMENPTELHFLAAKRICRYLQGTKDFGLFYKKSKMSDLIGFTDNDYAGDQDN 675

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           R+STSG+VFML +  +SWSSKK
Sbjct: 676 RRSTSGYVFMLGTGAISWSSKK 697

[Close]

BLAST of Pay0019010 vs. ExPASy TrEMBL
Match: A0A5B7B1Y6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_032401 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.7e-76
Identity = 146/202 (72.28%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLIYT N+ AM   FK+SMM EF MSDLG +HYFL +EVVQS  GI ISQ+
Sbjct: 1   MLIVCLYVDDLIYTGNNTAMFGSFKKSMMAEFEMSDLGMMHYFLGIEVVQSSTGIFISQK 60

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYV+++L RFQM +CN V+TP+EFG+KL+KD  GKKVD TLYKQIVGSLMY+T TRPDIM
Sbjct: 61  KYVREILDRFQMKDCNPVNTPSEFGMKLNKDNGGKKVDDTLYKQIVGSLMYLTATRPDIM 120

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           H VS+ISRYME PT++HLLA KRIFRYL+GTK + LFYKN  KSD  GFTDSDYAGD DD
Sbjct: 121 HAVSVISRYMECPTEIHLLAAKRIFRYLKGTKEFRLFYKNGEKSDLFGFTDSDYAGDSDD 180

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           RKSTS +VFM+ +  +SWSSKK
Sbjct: 181 RKSTSRYVFMMGTGAISWSSKK 202

[Close]

BLAST of Pay0019010 vs. ExPASy TrEMBL
Match: A0A438C7K3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3519 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.7e-76
Identity = 145/202 (71.78%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLI+T ND  M E+FK+SMM EF M DLG +HYFL +EVVQS  GI ISQ+
Sbjct: 1   MLIVCLYVDDLIFTGNDSVMFERFKKSMMVEFEMFDLGMMHYFLGIEVVQSDTGIFISQK 60

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYVQ++L RFQM +CN VSTP +FGLKL+KD  GKKVDS +YKQIVGSLMY+T TRPDIM
Sbjct: 61  KYVQEILNRFQMKDCNLVSTPTQFGLKLNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIM 120

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           H VSLISRYMENPT++H LA K+I  YLQGTK++GLFYK   +SD +GFTDSDYAGD D+
Sbjct: 121 HSVSLISRYMENPTELHFLAAKKICCYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDN 180

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           R+STSG+VFML +  VSWSSKK
Sbjct: 181 RRSTSGYVFMLGTGAVSWSSKK 202

[Close]

BLAST of Pay0019010 vs. NCBI nr
Match: XP_016900877.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR
Sbjct: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM
Sbjct: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD
Sbjct: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           RKSTSGHVFMLSSQVVSWSSKK
Sbjct: 181 RKSTSGHVFMLSSQVVSWSSKK 202

[Close]

BLAST of Pay0019010 vs. NCBI nr
Match: KAF7150925.1 (hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 157/202 (77.72%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLIYT ND AM EKFK+SMM EF MSDLGK+HYFL +EVVQ P GI ISQ+
Sbjct: 197 MLIVCLYVDDLIYTGNDSAMFEKFKESMMAEFEMSDLGKMHYFLGIEVVQLPAGIFISQK 256

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYVQ++L RFQM  CNSVSTP EFGLKL KD  GKKVDSTLYKQIVGSLMY+T TRPDIM
Sbjct: 257 KYVQEILDRFQMKNCNSVSTPTEFGLKLTKDHDGKKVDSTLYKQIVGSLMYLTATRPDIM 316

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           + VSLISRYMENPT++HLL  KRIFRYLQGT  +GLFYK   +SD  GFTDSDYAGD DD
Sbjct: 317 YSVSLISRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKKGERSDLRGFTDSDYAGDQDD 376

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           R+STSG+VFML S  VSWSSKK
Sbjct: 377 RRSTSGYVFMLGSGAVSWSSKK 398

[Close]

BLAST of Pay0019010 vs. NCBI nr
Match: KAF7132250.1 (hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii])

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-79
Identity = 154/202 (76.24%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1    MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
            +LIVCLYVDDLIYT ND AM +KFK+SMM EF MSDLGK+HYFL +EVVQ P GI ISQ+
Sbjct: 1045 ILIVCLYVDDLIYTGNDSAMFKKFKESMMAEFEMSDLGKMHYFLGIEVVQLPAGIFISQK 1104

Query: 61   KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
            KY Q++L RFQM  CNSVSTP EFGLKL KD  GKKVDSTLYKQIVGSLMY+T TRPDIM
Sbjct: 1105 KYAQEILDRFQMKNCNSVSTPTEFGLKLTKDHDGKKVDSTLYKQIVGSLMYLTATRPDIM 1164

Query: 121  HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
            + VSLISRYMENPT++HLL  KRIFRYLQGT  +GLFYK   +SD  GFTDSDYAGD DD
Sbjct: 1165 YSVSLISRYMENPTELHLLVAKRIFRYLQGTWKFGLFYKKGERSDLRGFTDSDYAGDQDD 1224

Query: 181  RKSTSGHVFMLSSQVVSWSSKK 203
            R+STSG+VFML S  VSWSSKK
Sbjct: 1225 RRSTSGYVFMLGSGAVSWSSKK 1246

[Close]

BLAST of Pay0019010 vs. NCBI nr
Match: RVW92024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 296.6 bits (758), Expect = 1.6e-76
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1    MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
            MLIVCLYVDDLI+T ND  M E+FK+SMM EF MSDLG +HYFL +EVVQS  GI ISQ+
Sbjct: 1040 MLIVCLYVDDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDTGIFISQK 1099

Query: 61   KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
            KYV+++L RFQM +CN VSTP +FGLKL+KD  GKKVD+ +YKQIVGSLMY+T TRPDIM
Sbjct: 1100 KYVREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDNIIYKQIVGSLMYLTATRPDIM 1159

Query: 121  HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
            H VSLISRYMENPT++H LA K+I RYLQGTK++GLFYK   +SD +GFTDSDYAGD D+
Sbjct: 1160 HSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDN 1219

Query: 181  RKSTSGHVFMLSSQVVSWSSKK 203
            R+STSG+VFML +  VSWSSKK
Sbjct: 1220 RRSTSGYVFMLGTGAVSWSSKK 1241

[Close]

BLAST of Pay0019010 vs. NCBI nr
Match: RVX00732.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 295.0 bits (754), Expect = 4.8e-76
Identity = 143/202 (70.79%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 1   MLIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQR 60
           MLIVCLYVDDLI+T ND  M E+FK+SMM EF MSDLG +HYFL +EVVQS  GI ISQ+
Sbjct: 496 MLIVCLYVDDLIFTGNDSVMFERFKKSMMVEFEMSDLGMMHYFLGIEVVQSDIGIFISQK 555

Query: 61  KYVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIM 120
           KYV+++L RFQM +CN VSTP +FGLKL+KD  GKKVD+ +YKQIVGSLMY+T TRP+IM
Sbjct: 556 KYVREILNRFQMKDCNPVSTPTQFGLKLNKDHGGKKVDNIIYKQIVGSLMYLTATRPNIM 615

Query: 121 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 180
           H VSLISRYMENPT++H LA KRI RYLQGTK++GLFYK    SD +GFTD+DYAGD D+
Sbjct: 616 HLVSLISRYMENPTELHFLAAKRICRYLQGTKDFGLFYKKSKMSDLIGFTDNDYAGDQDN 675

Query: 181 RKSTSGHVFMLSSQVVSWSSKK 203
           R+STSG+VFML +  +SWSSKK
Sbjct: 676 RRSTSGYVFMLGTGAISWSSKK 697

[Close]

BLAST of Pay0019010 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-31
Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 0


Query: 2   LIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQRK 61
           + + LYVDD++ T +   +L      +   F+M DLG VHYFL +++   P G+ +SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 62  YVQDVLMRFQMSECNSVSTPAEFGLKLHKD-QKGKKVDSTLYKQIVGSLMYITTTRPDIM 121
           Y + +L    M +C  +STP    LKL+      K  D + ++ IVG+L Y+T TRPDI 
Sbjct: 61  YAEQILNNAGMLDCKPMSTP--LPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 120

Query: 122 HFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDD 181
           + V+++ + M  PT      +KR+ RY++GT  +GL+     K +   F DSD+AG    
Sbjct: 121 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 180

Query: 182 RKSTSGHVFMLSSQVVSWSSKK 203
           R+ST+G    L   ++SWS+K+
Sbjct: 181 RRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Pay0019010 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 0


Query: 2   LIVCLYVDDLIYTRNDVAMLEKFKQSMMFEFNMSDLGKVHYFLRLEVVQSPFGICISQRK 61
           L V +YVDD+I   N+ A +++ K  +   F + DLG + YFL LE+ +S  GI I QRK
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

Query: 62  YVQDVLMRFQMSECNSVSTPAEFGLKLHKDQKGKKVDSTLYKQIVGSLMYITTTRPDIMH 121
           Y  D+L    +  C   S P +  +       G  VD+  Y++++G LMY+  TR DI  
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISF 397

Query: 122 FVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGFTDSDYAGDIDDR 181
            V+ +S++ E P   H  AV +I  Y++GT   GLFY +  +     F+D+ +    D R
Sbjct: 398 AVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTR 457

Query: 182 KSTSGHVFMLSSQVVSWSSKK 203
           +ST+G+   L + ++SW SKK
Sbjct: 458 RSTNGYCMFLGTSLISWKSKK 478

[Close]

BLAST of Pay0019010 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-07
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 110 MYITTTRPDIMHFVSLISRYMENPTKMHLLAVKRIFRYLQGTKNYGLFYKNVVKSDFVGF 169
           MY+T TRPD+   V+ +S++        + AV ++  Y++GT   GLFY          F
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 170 TDSDYAGDIDDRKSTSG 187
            DSD+A   D R+S +G
Sbjct: 61  ADSDWASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of Pay0019010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-36	40.59	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-34	38.61	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	7.5e-32	41.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	3.1e-30	36.14	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	7.3e-27	33.98	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Pay0019010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY19	7.9e-109	100.00	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A438I5N6	7.9e-77	71.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IVG3	2.3e-76	70.79	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A5B7B1Y6	6.7e-76	72.28	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Davidia involu...	[more]
A0A438C7K3	6.7e-76	71.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of Pay0019010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900877.1	1.6e-108	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAF7150925.1	1.4e-80	77.72	hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii]	[more]
KAF7132250.1	3.5e-79	76.24	hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii]	[more]
RVW92024.1	1.6e-76	71.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX00732.1	4.8e-76	70.79	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Pay0019010 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.2e-31	36.14	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.8e-31	35.82	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	2.9e-07	35.06	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..82 e-value: 2.8E-19 score: 69.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..194
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019010.1	Pay0019010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding