Pay0018475 (gene) Melon (Payzawat) v1

Overview


Name	Pay0018475
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	chr05: 3108780 .. 3109934 (-)
RNA-Seq Expression	Pay0018475
Synteny	Pay0018475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTAAAAGCAGTCTCTCGGTTATCATCCCGCTTGCAATCCCTCTCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATCCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTAAGACTTGTCTCTTCCCTCCATTTTCAATCCCATTCATCTTAGAATCATACAATCATAGAATCATCAGTTACTGAAAGAAATTCAGTTCAATTCTTAAACGTGGAATAGATTTTGACTACAGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCCCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTTTGCTTAAGTTTCTTCTTGCATCTGGGTCTTGTGAATGCTGATGATTCTCCATTATTGTATGTGCTCGAGTAATGTTGCCAAAGAAGCATTCCAAATATCCTTTTGTTTGTTCACACTTCATAGAATTTTGTTTCTTAAAATAATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTAGGATGATCATAGTTTGGGTCTAGTTCAATGCATTATGTCTTGCGGAACTCTAGTACGATTGAGGTAATCGGCCTGATGTTTGCCTGTACTGCTAGAATTTTCATGACCTTTGAATTGTGATTAGAGTCATATGGATGAAAAGGATGGAATACATCACTTTGATTGGTGTATGAAGGCAACAAGCTGAATCATACAAGCAACTTTAGTATTTGAACGAGAATTATTATAACTGATCATACATACGAAGTAGCCATAGTTGATTACACAATTTTAGCATTAGTCTAGTTTTTCAACAACTTAGCTGTGGTAGATTACTTTACGGTGGGTGCAAATGTTTGGGCTATTTGGCCGAAAAGAATTCAAAGGAATGGGATTGTTGAACATTTACGTTTTCTCCACCTGCAATAGATTTTTGAACCTTTTTTTTTTTTTTTTGTTATTTGAGCTATTGTAGTTTTTATTCAATCGGTGTTCGAGTTAAGAGCAGGGAGAGTTCCTTTTTTGTGTGTGGGTGTGGGCATTTAATTGGGAGGTTCTCTTCATCCCTTCCAATGTAA

mRNA sequence

ATGGCGTCCTTAAAAGCAGTCTCTCGGTTATCATCCCGCTTGCAATCCCTCTCTCCAAAGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCCCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTCTCTTCATCCCTTCCAATGTAA

Coding sequence (CDS)

ATGGCGTCCTTAAAAGCAGTCTCTCGGTTATCATCCCGCTTGCAATCCCTCTCTCCAAAGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCCCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTCTCTTCATCCCTTCCAATGTAA

Protein sequence

MASLKAVSRLSSRLQSLSPKLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM

Homology

[Close]

BLAST of Pay0018475 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 63/99 (63.64%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSS 66
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMF  S
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFCLS 99

[Close]

BLAST of Pay0018475 vs. ExPASy TrEMBL
Match: A0A1S3C7U8 (uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 62/102 (60.78%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 61/102 (59.80%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSL+PK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. ExPASy TrEMBL
Match: A0A1S3C7Z3 (uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 60/95 (63.16%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGM 62
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQVM 95

[Close]

BLAST of Pay0018475 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASL+AVSRLSSRLQSL+PK                                  LP+ELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. NCBI nr
Match: KAA0061549.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 8.4e-17
Identity = 63/99 (63.64%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSS 66
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMF  S
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFCLS 99

[Close]

BLAST of Pay0018475 vs. NCBI nr
Match: XP_008458440.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 9.3e-16
Identity = 62/102 (60.78%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. NCBI nr
Match: XP_004139345.1 (uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical protein Csa_019508 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 61/102 (59.80%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSL+PK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. NCBI nr
Match: XP_008458447.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 60/95 (63.16%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLKAVSRLSSRLQSLSPK                                  LPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGM 62
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQVM 95

[Close]

BLAST of Pay0018475 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 6.0e-15
Identity = 60/102 (58.82%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLSPK----------------------------------LPVELS 60
          MASLK VSRLSSRLQSL+PK                                  LPVELS
Sbjct: 1  MASLKTVSRLSSRLQSLAPKFNKRSSYSELSPFKSPCQSQPSTASTSRLPCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSLPM 69
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG+   S+P+
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI---SMPL 99

[Close]

BLAST of Pay0018475 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 5.6e-11
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 7  VSRLSSRLQSLSP-----------KLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWG 66
          +S L S ++S SP           +LPVELS   S++PLHSAIA+ARLISSL++ES+ WG
Sbjct: 28 ISSLPSPIKSSSPSSATSRINQSFRLPVELSCCLSMLPLHSAIASARLISSLSVESKSWG 87

[Close]

BLAST of Pay0018475 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  VSRLSSRLQSLSP-----------KLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWG 66
          +S L S ++S SP           +LPVELS   S++PLHSAIA+ARLISSL++ES+ WG
Sbjct: 28 ISSLPSPIKSSSPSSATSRINQSFRLPVELSCCLSMLPLHSAIASARLISSLSVESKSWG 87

Query: 67 LVPQGMFSSSLPM 69
          LVPQG+   S+P+
Sbjct: 88 LVPQGI---SMPL 97

[Close]

BLAST of Pay0018475 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 7  VSRLSSRLQSLSP------------KLPVELSSQGSLMPLHSAIAAARLISSLTIESQGW 66
          VS L S ++S SP            +LPVELS   S++PLHSAIA++RL+SSL++ES+ W
Sbjct: 28 VSSLPSPIKSASPSSATSCRLNRSSRLPVELS---SMIPLHSAIASSRLVSSLSVESKIW 87

Query: 67 GLVPQGMFSSSLPM 69
          GLVPQG+   SLP+
Sbjct: 88 GLVPQGL---SLPL 95

[Close]

BLAST of Pay0018475 vs. TAIR 10
Match: AT1G70350.1 (unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 3.9e-04
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 20  KLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFSSSL 67
           ++PVELS+  SL+PLHS  A+A L S L++ +Q W  + +G F+S+L
Sbjct: 60  RVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEG-FASTL 105

The following BLAST results are available for this feature:

BLAST of Pay0018475 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0018475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7B3	4.1e-17	63.64	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C7U8	4.5e-16	60.78	uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LKT5	1.0e-15	59.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1	[more]
A0A1S3C7Z3	2.2e-15	63.16	uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KDE2	1.4e-14	56.86	uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876...	[more]

BLAST of Pay0018475 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061549.1	8.4e-17	63.64	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protei...	[more]
XP_008458440.1	9.3e-16	60.78	PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]	[more]
XP_004139345.1	2.1e-15	59.80	uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical ...	[more]
XP_008458447.1	4.6e-15	63.16	PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]	[more]
XP_038889658.1	6.0e-15	58.82	uncharacterized protein LOC120079520 [Benincasa hispida]	[more]

BLAST of Pay0018475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55205.2	5.6e-11	54.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.1	2.1e-10	52.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13674.1	4.0e-09	51.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70350.1	3.9e-04	46.81	unknown protein; Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 20..62
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 20..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0018475.1	Pay0018475.1	mRNA