Pay0017696 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017696
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr05: 1093998 .. 1094569 (+)
RNA-Seq Expression	Pay0017696
Synteny	Pay0017696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGACAAACAGAGGTCTCTCAAAGCCTCTCTGGAAGCTAAATTCAAACAATATTTTCGACACTGCTTCTGTTAAAAAGGACCTAGCCGGAGCTACTTCTTGCCCAGCAAATTTCCCTCCTAGTCTTTACAAAACTCTGTGGAAGGTAGAATTCCCAAAAAAATGCAAATTCTTTATTTGGACTCTTATTCATGGCTGCATAAATACTGCTGATCGATTGGAAAAACGTCTTCCAAATTGGGCCCTCAGCCCAAACTGGTGTTATATGTGCAACAAGAGTCAAGAGGATATAAACCATCTTTTCATTCACTGCCACTATATACAGTTGTTATGGAACATAAGGTCCGGTCTCTGTTGAATTGGAACAACACTCTTATTGACGTGAACTCCCTTGTTAAGGATATTTGCTCACTAGATATAAAGACTCAAAAAGGGCTGATAACTTTCAATACCATTGCTGTTCTACTATGGAAGATTTGGTTGGAAAGAAACAGTAGAGTCTTCAAGCAGAAGAAAAAAGAAGTTCAAGACCTTTGGGAAGACATCCTTGCACAAACCGGTTTATGA

mRNA sequence

ATGCCACTGACAAACAGAGGTCTCTCAAAGCCTCTCTGGAAGCTAAATTCAAACAATATTTTCGACACTGCTTCTGTTAAAAAGGACCTAGCCGGAGCTACTTCTTGCCCAGCAAATTTCCCTCCTAGTCTTTACAAAACTCTGTGGAAGGTAGAATTCCCAAAAAAATGCAAATTCTTTATTTGGACTCTTATTCATGGCTGCATAAATACTGCTGATCGATTGGAAAAACGTCTTCCAAATTGGGCCCTCAGCCCAAACTGGTGTTATATGTGCAACAAGAGTCAAGAGGATATAAACCATCTTTTCATTCACTGCCACTATATACAGTTGTTATGGAACATAAGGTCCGGTCTCTATATAAAGACTCAAAAAGGGCTGATAACTTTCAATACCATTGCTGTTCTACTATGGAAGATTTGGTTGGAAAGAAACAGTAGAGTCTTCAAGCAGAAGAAAAAAGAAGTTCAAGACCTTTGGGAAGACATCCTTGCACAAACCGGTTTATGA

Coding sequence (CDS)

ATGCCACTGACAAACAGAGGTCTCTCAAAGCCTCTCTGGAAGCTAAATTCAAACAATATTTTCGACACTGCTTCTGTTAAAAAGGACCTAGCCGGAGCTACTTCTTGCCCAGCAAATTTCCCTCCTAGTCTTTACAAAACTCTGTGGAAGGTAGAATTCCCAAAAAAATGCAAATTCTTTATTTGGACTCTTATTCATGGCTGCATAAATACTGCTGATCGATTGGAAAAACGTCTTCCAAATTGGGCCCTCAGCCCAAACTGGTGTTATATGTGCAACAAGAGTCAAGAGGATATAAACCATCTTTTCATTCACTGCCACTATATACAGTTGTTATGGAACATAAGGTCCGGTCTCTATATAAAGACTCAAAAAGGGCTGATAACTTTCAATACCATTGCTGTTCTACTATGGAAGATTTGGTTGGAAAGAAACAGTAGAGTCTTCAAGCAGAAGAAAAAAGAAGTTCAAGACCTTTGGGAAGACATCCTTGCACAAACCGGTTTATGA

Protein sequence

MPLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLWNIRSGLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWEDILAQTGL

Homology

[Close]

BLAST of Pay0017696 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78
Identity = 141/188 (75.00%), Postives = 155/188 (82.45%), Query Frame = 0


Query: 2    PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
            PL +RG SKPLWKLNSNNIFDTAS+KKDL+ A++ P NF PSLYKTLWKV+FPKKCKFFI
Sbjct: 825  PLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFI 884

Query: 62   WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
            WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 885  WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLK 944

Query: 122  ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                  +++S       L IKTQKGLITFNTIA+LLWKIWLERN+R+FKQ+KKE QDLWE
Sbjct: 945  WNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWE 1004

[Close]

BLAST of Pay0017696 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78
Identity = 141/188 (75.00%), Postives = 155/188 (82.45%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL +RG SKPLWKLNSNNIFDTAS+KKDL+ A++ P NF PSLYKTLWKV+FPKKCKFFI
Sbjct: 731 PLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFI 790

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 791 WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLK 850

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L IKTQKGLITFNTIA+LLWKIWLERN+R+FKQ+KKE QDLWE
Sbjct: 851 WNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWE 910

[Close]

BLAST of Pay0017696 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.8e-75
Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL NRGL KPLWKLNSNNIFDTASVKK L+ A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 276 PLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFI 335

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNWALSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 336 WTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLK 395

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L I+ QKGLITFNT A+LLWKIWLERN+R+FKQ+ K+ QDLWE
Sbjct: 396 WNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWE 455

[Close]

BLAST of Pay0017696 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.8e-75
Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL NRGL KPLWKLNSNNIFDTASVKK L+ A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 233 PLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFI 292

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNWALSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 293 WTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLK 352

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L I+ QKGLITFNT A+LLWKIWLERN+R+FKQ+ K+ QDLWE
Sbjct: 353 WNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWE 412

[Close]

BLAST of Pay0017696 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 132/188 (70.21%), Postives = 145/188 (77.13%), Query Frame = 0


Query: 2    PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
            PL NRG  KPLW LNSNNIFDTASVK+ +A A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 933  PLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFI 992

Query: 62   WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
            WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 993  WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLN 1052

Query: 122  ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                  +++S       L I+ QKGLITFNT A +LWKIWLERN+R+FKQ++K  QDLWE
Sbjct: 1053 WNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWE 1112

[Close]

BLAST of Pay0017696 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 141/188 (75.00%), Postives = 155/188 (82.45%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL +RG SKPLWKLNSNNIFDTAS+KKDL+ A++ P NF PSLYKTLWKV+FPKKCKFFI
Sbjct: 731 PLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFI 790

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 791 WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLK 850

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L IKTQKGLITFNTIA+LLWKIWLERN+R+FKQ+KKE QDLWE
Sbjct: 851 WNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWE 910

[Close]

BLAST of Pay0017696 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 141/188 (75.00%), Postives = 155/188 (82.45%), Query Frame = 0


Query: 2    PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
            PL +RG SKPLWKLNSNNIFDTAS+KKDL+ A++ P NF PSLYKTLWKV+FPKKCKFFI
Sbjct: 825  PLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFI 884

Query: 62   WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
            WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 885  WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLK 944

Query: 122  ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                  +++S       L IKTQKGLITFNTIA+LLWKIWLERN+R+FKQ+KKE QDLWE
Sbjct: 945  WNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWE 1004

[Close]

BLAST of Pay0017696 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.8e-75
Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL NRGL KPLWKLNSNNIFDTASVKK L+ A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 276 PLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFI 335

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNWALSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 336 WTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLK 395

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L I+ QKGLITFNT A+LLWKIWLERN+R+FKQ+ K+ QDLWE
Sbjct: 396 WNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWE 455

[Close]

BLAST of Pay0017696 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.8e-75
Identity = 139/188 (73.94%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 2   PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
           PL NRGL KPLWKLNSNNIFDTASVKK L+ A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 233 PLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFI 292

Query: 62  WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
           WTLIHGCINTADRL+KRLPNWALSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 293 WTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLK 352

Query: 122 ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                 +++S       L I+ QKGLITFNT A+LLWKIWLERN+R+FKQ+ K+ QDLWE
Sbjct: 353 WNRTPTDVQSLVQNICSLNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWE 412

[Close]

BLAST of Pay0017696 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.6e-71
Identity = 132/188 (70.21%), Postives = 145/188 (77.13%), Query Frame = 0


Query: 2    PLTNRGLSKPLWKLNSNNIFDTASVKKDLAGATSCPANFPPSLYKTLWKVEFPKKCKFFI 61
            PL NRG  KPLW LNSNNIFDTASVK+ +A A   PANF P+LYKTLWKVEFPKKCKFFI
Sbjct: 933  PLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFI 992

Query: 62   WTLIHGCINTADRLEKRLPNWALSPNWCYMCNKSQEDINHLFIHCHYIQLLW-------- 121
            WTLIHGCINTADRL+KRLPNW LSPNWCYMCNKSQEDINHLFIHC Y Q LW        
Sbjct: 993  WTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLN 1052

Query: 122  ------NIRS------GLYIKTQKGLITFNTIAVLLWKIWLERNSRVFKQKKKEVQDLWE 170
                  +++S       L I+ QKGLITFNT A +LWKIWLERN+R+FKQ++K  QDLWE
Sbjct: 1053 WNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWE 1112

The following BLAST results are available for this feature:

BLAST of Pay0017696 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0017696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	7.8e-78	75.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	7.8e-78	75.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	4.8e-75	73.94	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	4.8e-75	73.94	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	4.2e-71	70.21	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Pay0017696 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.6e-77	75.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.6e-77	75.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	9.8e-75	73.94	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	9.8e-75	73.94	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	8.6e-71	70.21	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of Pay0017696 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 43..113 e-value: 9.6E-17 score: 61.5
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 38..125
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 38..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017696.1	Pay0017696.1	mRNA