Pay0017620 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017620
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RNA-directed DNA methylation 4 isoform X2
Location	chr03: 18176767 .. 18177812 (-)
RNA-Seq Expression	Pay0017620
Synteny	Pay0017620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAACAAAATTGTAAGTTCCAATATTTCTAGCAGTCACTTGAATTATTTGGCGTACAACTTTAGTTATAAATGATGCAACTATGATCCTATATAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATAGTGTCCAGTTCTTGCTTTGCCTAAGTTTTCTTCCTTACCTCACTTTTTAGTTTCATCTCTGTATTTGGGGTTTTATTTTAGTTTCTGTTGTGATCTTTTGTTATTTCATTTATATATGAAATGGTTTTTTTTATAAAAAAGAAAAAAAATGTAATTTCTTATTTTTATGTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGTGCGTCTTTCTCCCTTTTTCTGGTTTCCCTTTCTGCTATGGTTTACACTTTATGTTTTTTTTAATCATTTCATATATTTTTTTTTCAGGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGGTAAAAACCAAAAACCTTTTCCTTCTAGTTTAAAAATCTAAATTATATCTGATTTCTTTTATGATTGTCTTTTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAGGATGAGTTATCGGAGGAGGAAAAAGTTGAATTATATGAGGATGACATAAATGATGATTTTGATGAAGATGATGGTGGTGATAGCTTTGATTATGATAGTAATGGTGGTCATGATGAAGGTGAAGATAGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTAGGGAATATATATCTTTTTTAATTAGGGTTTTTAGCGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG

mRNA sequence

ATGATGAAACAAAATTTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAACGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG

Coding sequence (CDS)

ATGATGAAACAAAATTTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAACGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG

Protein sequence

MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMMRSSPQKRFAYYGRNACYD

Homology

[Close]

BLAST of Pay0017620 vs. ExPASy Swiss-Prot
Match: Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 4   QNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENN 63
           Q+   ++YV DYY V  +M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++
Sbjct: 213 QSSHTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDH 272

Query: 64  PCFDYPDEEELESESSNE 80
           P  DYP+EEE E E  ++
Sbjct: 273 PKTDYPEEEEEEEEEDDD 290

[Close]

BLAST of Pay0017620 vs. ExPASy TrEMBL
Match: A0A1S3CIA5 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501292 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.5e-39
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
          MMKQNLPVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN
Sbjct: 1  MMKQNLPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60

Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
          NPCFDYPDEEELESESSNEMMRSSP ++
Sbjct: 61 NPCFDYPDEEELESESSNEMMRSSPLRK 88

[Close]

BLAST of Pay0017620 vs. ExPASy TrEMBL
Match: A0A5A7T861 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00080 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.8e-37
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 5  NLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 64
          ++PVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF
Sbjct: 7  SVPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 66

Query: 65 DYPDEEELESESSNEMMRSSPQKRFAY 92
          DYPDEEELESESSNEMMRSSP + F Y
Sbjct: 67 DYPDEEELESESSNEMMRSSPLRNFDY 93

[Close]

BLAST of Pay0017620 vs. ExPASy TrEMBL
Match: A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVKND+EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES SSN+ +  S  ++
Sbjct: 280 NPCFDYPDEEELESTSSNDELEDSDDEK 307

[Close]

BLAST of Pay0017620 vs. ExPASy TrEMBL
Match: A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES+SSN+ +  S  ++
Sbjct: 280 NPCFDYPDEEELESKSSNDELEDSDDEK 307

[Close]

BLAST of Pay0017620 vs. ExPASy TrEMBL
Match: A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 279 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 338

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES+SSN+ +  S  ++
Sbjct: 339 NPCFDYPDEEELESKSSNDELEDSDDEK 366

[Close]

BLAST of Pay0017620 vs. NCBI nr
Match: XP_008463057.1 (PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
          MMKQNLPVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN
Sbjct: 1  MMKQNLPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60

Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
          NPCFDYPDEEELESESSNEMMRSSP ++
Sbjct: 61 NPCFDYPDEEELESESSNEMMRSSPLRK 88

[Close]

BLAST of Pay0017620 vs. NCBI nr
Match: KAA0039163.1 (RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1 RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 5  NLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 64
          ++PVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF
Sbjct: 7  SVPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 66

Query: 65 DYPDEEELESESSNEMMRSSPQKRFAY 92
          DYPDEEELESESSNEMMRSSP + F Y
Sbjct: 67 DYPDEEELESESSNEMMRSSPLRNFDY 93

[Close]

BLAST of Pay0017620 vs. NCBI nr
Match: XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVKND+EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES SSN+ +  S  ++
Sbjct: 280 NPCFDYPDEEELESTSSNDELEDSDDEK 307

[Close]

BLAST of Pay0017620 vs. NCBI nr
Match: XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 218 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 277

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES+SSN+ +  S  ++
Sbjct: 278 NPCFDYPDEEELESKSSNDELEDSDDEK 305

[Close]

BLAST of Pay0017620 vs. NCBI nr
Match: KAA0051104.1 (RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02694.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
           MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 279 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 338

Query: 61  NPCFDYPDEEELESESSNEMMRSSPQKR 89
           NPCFDYPDEEELES+SSN+ +  S  ++
Sbjct: 339 NPCFDYPDEEELESKSSNDELEDSDDEK 366

[Close]

BLAST of Pay0017620 vs. TAIR 10
Match: AT2G30280.1 (RNA-directed DNA methylation 4 )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 4   QNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENN 63
           Q+   ++YV DYY V  +M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++
Sbjct: 213 QSSHTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDH 272

Query: 64  PCFDYPDEEELESESSNE 80
           P  DYP+EEE E E  ++
Sbjct: 273 PKTDYPEEEEEEEEEDDD 290

The following BLAST results are available for this feature:

BLAST of Pay0017620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYP3	1.7e-08	42.31	RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1	[more]

BLAST of Pay0017620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIA5	5.5e-39	95.45	RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350129...	[more]
A0A5A7T861	8.8e-37	91.95	RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0K5Q3	1.4e-31	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1	[more]
A0A1S4DWJ0	1.6e-30	79.55	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BU38	1.6e-30	79.55	RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Pay0017620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463057.1	1.1e-38	95.45	PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo]	[more]
KAA0039163.1	1.8e-36	91.95	RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1...	[more]
XP_004139832.1	3.0e-31	81.82	RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei...	[more]
XP_008447118.1	3.3e-30	79.55	PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo]	[more]
KAA0051104.1	3.3e-30	79.55	RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02...	[more]

BLAST of Pay0017620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30280.1	1.2e-09	42.31	RNA-directed DNA methylation 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	PANTHER	PTHR31934	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 4..79
None	No IPR available	PANTHER	PTHR31934:SF2	RNA-DIRECTED DNA METHYLATION 4	coord: 4..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017620.1	Pay0017620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006306	DNA methylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity