Pay0017513 (gene) Melon (Payzawat) v1

Overview


Name	Pay0017513
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr11: 7414896 .. 7418083 (+)
RNA-Seq Expression	Pay0017513
Synteny	Pay0017513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCTCAAGACTTCATTCCTCAGTCCAATCCTCCTCCCTCCCCCTTCCATTCGTACCACTCGCTCGCCGTTAAAGTACAAAAATGCCGAAATTTTCATCATTCGGTTATCGGTAACGCCCGATCCTTGGTCTCTCAGTGATGGCAATCCAGCAAGACCAAAACCCAGGTCCAAAAACGCCAAAAGGCCTCTCTCCGATGACAACGCCCGCCGAATCATCAAGGCCAAGGCTCAGTACCTTAGTGTACTGCGTCGAAATCAGGGCCCAAGAGCTCAAACGCCCAAATGGATCAAGAGAACTCCGGAGCAGATGGTGCAGTACCTTGAGGACGATAGAAATGGCCACCTCTATGGAAAGCATGTGGTAGCGGCGATTAGGCACGTGCGGAGTTTGTCTCAGAAAACCGAGGGAGAGTACGATATGAGGATGGAAATGGCTTCTTTTGTTGAAAAATTGACCTTTAGGGAGATGTGTATTGTACTTAAGGAGCAGAAGGGGTGGAGGCAGGTCAGAGATGTGTTTAAATTGTGTAGTAATTGGGAAATTGAGGTGGGTGTTTTTGAAGTGTTTGAAATTTCTACAATGTTTTGTAATATTTTCGGATGTATAAGTTGTTTTTCTGTATTTGTTATGGGATTTATAATGAAGTTTTGTTTGGAGTGTTTAGTGAGTTTCATTTGGTGGATATTATCAGTGCATATTGTGATCCAATTAACACATTTTCACCTGAAGAATTAATTTTATTTGTTGTGATGTGTTTGACGGGTTTTGGATCATTGTAATTTTAGCAGGTCATTTTTTAAATTTGTATCGTGTTATGTTTCTCCAGTTGTTAGTTGGTACACACATAGAACTTAATGTCCTTGTGGATTCTATGGAAAAAAAATACAATGGACTTCTAATATGGTTTAAGGTTGAAAGGGGCTTACTTCACGTGTTAAATTACTTGGGTTACAATAATTGTAATTGTAACACTATGTAATATACTTTGTTATTTAATGGTCTTGGTGTTCATCATGGATTGTATGCATGAAAACGAGAAGGAATTACGAATAATGACTTATCAATAAAAGAAAATTAGAAAAAAATAGCCCATATCACCTGTACTATCGTGTTCGTTTAATGTTCCATATTAACGTTAATAAATGACAAATTATGATAGCATCCCGTAATGTAAGCGAACTGATATATCAGAGGGTGAGGAGAGTGGCTATTCAGATCGGTTATTCTAACTTTTAATGTTGCTACTTCTTGCATTTAGTGCTAGGAAATGTTATTGGACATTGAATCATTAATACCTTGGACTTTTAGTATAATTGTTTTTCTATTTTGGTCTTTTGCAAAAGCCCCCATCAAGAAAAGCTATCACTAAAGTAACACGTAACCTTCTATAGGGGTAAAAAAAATATGAGGCATTACTAGTTTATATGGTGGGCAACCAATAGTCTCTCCAAAGGTTTCACTTTATGTTGCGGTAAATGGCAAGGCTTTCGTGGTGGAAAGCGTATGCAATCATGAAAAATTCTATCCTGCAAAAATAAAGGACACTCGTCGTGTAAAGTAGCATGTGCTTCTGTGAAAAGATATCCTCTAACCAGGGCCGCCTTAATTTGTCTTACTTTTCTTTAATGTCGTTTTGCATCGGCCCTGGCCTTATGGATGATGGGCCACAAGCATGTGTTCACTAGAGAATTAGTAGCCGGCTAAACCGTTGTATCTCAGGATATATATTATTGGGACCGTTTTGGCTTCGTTTGAATTTGGTGGCGAGCACCGATTATATCGAACGAGCAAAAAGCAGCAACACACTCTAGATAGAGTGTCACTTGTGTTTGCGGAAAGAGATAATTAGTAACAAGAACTATGTTAAAAGGGTAGTATGGAGACTGAGACGGAGGGTAAATTCAATAAAAAGGGGGAGAAGGAGATGGGAAAATGTTTTTTTTTTTTCATTTGTTTGTTGAAATTAGAGGGAGGTGTGCTATATATCACTGTTTTATGTTGGCAGGTTTTTATACGTGGATTCAAAGGGGGTGTATAAATCAGGTGTGGAGTAAATCGTTTGGTTTAACGAAGTTCTTAATCAGTCCCGTAGGATCAGTAAACACTATAATATTTCTGAGCGGGTCCAATCTTTCGGGCCCACTCGTGAAAGACTTTAACTATACGGCGACGTGCCTCTACTTGATAAACCTTGCTTTGAAGTTGGGTACTGGGTCTAGAGGGAATTTGCCAAGGGTATCCCATAGACAATTCGTAGTGGCTCACGTTCCAGCAGGGTTCCACAAAGGTGAATTCTATATTAGAGTTACTTTTGTAGTTATTTGTACTTTTCTCCACTTAGGTCATCAAGTATATCCTAATTTCATGATATGAAGGGTAAGTGTCAGGCATTTCATTCGCTTTCATATGATGGTTAAGGCTGTTTTCGTACAGTCATTTTTGTATCATAGAGAATGGAAACTCTTTGGACTAGGTTCTATGGAATTTGGGATCTCTTCCTTCCATATCGAAATTATGTGAGGCAGGCTTTTATTAACTCCTCATCTTATATTTGAACTTATTTTTTTGGCGTTCTTAGTCCTTTCAAGTTCGGGTTGCGTATAGACTTGAGTTCATTCTTTAAGGAGGTTGAATAATTATTGCCTCGTCATCAGTATTACAGTCCTTTGTGTTTCGAAAGAACAACTAAGTTTTATCATCAGTTCAATATATATTCTCACTATTTATTTACATAGGAGCGAGAATTATTTATTATGCTTTTATCCACCGTGATTTGTCATCTGCTTGCTATTTGTAATAACTATTTTTGAAACTTTTGTGATTAGGGTTTGCGGAAGTACTAATCTGTTGGATGTGGAAATTGGTTCAAGTGTATTGGCTGTGTTTTATGCGTCTTTCCCTTATAAGGAATGGTCTCTTAGGTAGCAGAGGTCTTTTTGAAGCGACAACTTGGGTTTTTTCTTCACTAGCAATAGCTCTAGTGTCGTGAATCAATTGGGGCGTTCATGGACTGCAATCGTAGATTCTATAGAATAATACAGATATTGGGGTTAGTGGGCGTCGTCTTACTATATTCTCAGTGTAGATATTTGAGAAGGAATCAATCCGCCCTAACATCTGAACTGTTTGCTATAGCTCTGACTTTTGAGAGTGATTATGTTCGGCACCATTCTTGGTAG

mRNA sequence

ATGGAGTCTCTCAAGACTTCATTCCTCAGTCCAATCCTCCTCCCTCCCCCTTCCATTCGTACCACTCGCTCGCCGTTAAAGTACAAAAATGCCGAAATTTTCATCATTCGGTTATCGGTAACGCCCGATCCTTGGTCTCTCAGTGATGGCAATCCAGCAAGACCAAAACCCAGGTCCAAAAACGCCAAAAGGCCTCTCTCCGATGACAACGCCCGCCGAATCATCAAGGCCAAGGCTCAGTACCTTAGTGTACTGCGTCGAAATCAGGGCCCAAGAGCTCAAACGCCCAAATGGATCAAGAGAACTCCGGAGCAGATGGTGCAGTACCTTGAGGACGATAGAAATGGCCACCTCTATGGAAAGCATGTGGTAGCGGCGATTAGGCACGTGCGGAGTTTGTCTCAGAAAACCGAGGGAGAGTACGATATGAGGATGGAAATGGCTTCTTTTGTTGAAAAATTGACCTTTAGGGAGATGTGTATTGTACTTAAGGAGCAGAAGGGGTGGAGGCAGGTCAGAGATGTGTTTAAATTGTGTAGTAATTGGGAAATTGAGGTGTGGAGTAAATCGTTTGGTTTAACGAAGTTCTTAATCAGTCCCGTAGGATCAGTAAACACTATAATATTTCTGAGCGGGTCCAATCTTTCGGGCCCACTCGTGAAAGACTTTAACTATACGGCGACGTGCCTCTACTTGATAAACCTTGCTTTGAAGTTGGGTACTGGGTCTAGAGGGAATTTGCCAAGGGTATCCCATAGACAATTCGTAGTGGCTCACGTTCCAGCAGGGTTCCACAAAGGTTCTATGGAATTTGGGATCTCTTCCTTCCATATCGAAATTATGGTTTGCGGAAGTACTAATCTGTTGGATGTGGAAATTGGTTCAAGTGTATTGGCTGTGTTTTATGCGTCTTTCCCTTATAAGGAATGGTCTCTTAGATTCTATAGAATAATACAGATATTGGGGTTAGTGGGCGTCGTCTTACTATATTCTCAGTGTAGATATTTGAGAAGGAATCAATCCGCCCTAACATCTGAACTGTTTGCTATAGCTCTGACTTTTGAGAGTGATTATGTTCGGCACCATTCTTGGTAG

Coding sequence (CDS)

ATGGAGTCTCTCAAGACTTCATTCCTCAGTCCAATCCTCCTCCCTCCCCCTTCCATTCGTACCACTCGCTCGCCGTTAAAGTACAAAAATGCCGAAATTTTCATCATTCGGTTATCGGTAACGCCCGATCCTTGGTCTCTCAGTGATGGCAATCCAGCAAGACCAAAACCCAGGTCCAAAAACGCCAAAAGGCCTCTCTCCGATGACAACGCCCGCCGAATCATCAAGGCCAAGGCTCAGTACCTTAGTGTACTGCGTCGAAATCAGGGCCCAAGAGCTCAAACGCCCAAATGGATCAAGAGAACTCCGGAGCAGATGGTGCAGTACCTTGAGGACGATAGAAATGGCCACCTCTATGGAAAGCATGTGGTAGCGGCGATTAGGCACGTGCGGAGTTTGTCTCAGAAAACCGAGGGAGAGTACGATATGAGGATGGAAATGGCTTCTTTTGTTGAAAAATTGACCTTTAGGGAGATGTGTATTGTACTTAAGGAGCAGAAGGGGTGGAGGCAGGTCAGAGATGTGTTTAAATTGTGTAGTAATTGGGAAATTGAGGTGTGGAGTAAATCGTTTGGTTTAACGAAGTTCTTAATCAGTCCCGTAGGATCAGTAAACACTATAATATTTCTGAGCGGGTCCAATCTTTCGGGCCCACTCGTGAAAGACTTTAACTATACGGCGACGTGCCTCTACTTGATAAACCTTGCTTTGAAGTTGGGTACTGGGTCTAGAGGGAATTTGCCAAGGGTATCCCATAGACAATTCGTAGTGGCTCACGTTCCAGCAGGGTTCCACAAAGGTTCTATGGAATTTGGGATCTCTTCCTTCCATATCGAAATTATGGTTTGCGGAAGTACTAATCTGTTGGATGTGGAAATTGGTTCAAGTGTATTGGCTGTGTTTTATGCGTCTTTCCCTTATAAGGAATGGTCTCTTAGATTCTATAGAATAATACAGATATTGGGGTTAGTGGGCGTCGTCTTACTATATTCTCAGTGTAGATATTTGAGAAGGAATCAATCCGCCCTAACATCTGAACTGTTTGCTATAGCTCTGACTTTTGAGAGTGATTATGTTCGGCACCATTCTTGGTAG

Protein sequence

MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYGKHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVFKLCSNWEIEVWSKSFGLTKFLISPVGSVNTIIFLSGSNLSGPLVKDFNYTATCLYLINLALKLGTGSRGNLPRVSHRQFVVAHVPAGFHKGSMEFGISSFHIEIMVCGSTNLLDVEIGSSVLAVFYASFPYKEWSLRFYRIIQILGLVGVVLLYSQCRYLRRNQSALTSELFAIALTFESDYVRHHSW

Homology

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BLAST of Pay0017513 vs. ExPASy Swiss-Prot
Match: O04647 (Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana OX=3702 GN=EMB976 PE=2 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 3.5e-56
Identity = 112/171 (65.50%), Postives = 129/171 (75.44%), Query Frame = 0


Query: 6   TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRP 65
           T F   I LP    R +R  +K  ++        V PDPWSLSDGNP +PKPR +  K P
Sbjct: 10  THFNPSIFLPKIPSRNSRISIKSSSSS-----SKVRPDPWSLSDGNPEKPKPRYERPKHP 69

Query: 66  LSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYGKHVVA 125
           LSDD+ARRIIK KAQYLS LRRNQG +A TPKWIKRTPEQMVQYLEDDRNG +YGKHVVA
Sbjct: 70  LSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYGKHVVA 129

Query: 126 AIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           AI+ VR LSQ+ +G  DMR  M+SFV KL+FR+MC+VLKEQ+GWRQVRD F
Sbjct: 130 AIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFF 175

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BLAST of Pay0017513 vs. ExPASy TrEMBL
Match: A0A5D3BQE2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001870 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. ExPASy TrEMBL
Match: A0A5A7THY4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G00180 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. ExPASy TrEMBL
Match: A0A1S3CJB8 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270 OS=Cucumis melo OX=3656 GN=LOC103501077 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. ExPASy TrEMBL
Match: A0A0A0KE22 (PPR_long domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118350 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 170/176 (96.59%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPP IRTTRSPLK +NA+IFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPFIRTTRSPLKSRNAQIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEY+MRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYNMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. ExPASy TrEMBL
Match: A0A6J1FXR3 (pentatricopeptide repeat-containing protein At5g27270 OS=Cucurbita moschata OX=3662 GN=LOC111448688 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 4.2e-84
Identity = 158/175 (90.29%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSP+LLPPPS R++R PLK +  +IFIIR SVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPVLLPPPSNRSSRCPLKSRKPQIFIIRSSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDD+NGHLYG
Sbjct: 61  NAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDKNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDV 176
           KHVVAAI+HVRSLSQ+ EGEYDMRMEMASFV KLTFREMCIVLKEQKGWRQVRDV
Sbjct: 121 KHVVAAIKHVRSLSQRAEGEYDMRMEMASFVGKLTFREMCIVLKEQKGWRQVRDV 175

[Close]

BLAST of Pay0017513 vs. NCBI nr
Match: TYK00992.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 2.7e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. NCBI nr
Match: XP_008462786.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 2.7e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. NCBI nr
Match: KAA0042408.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 2.7e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. NCBI nr
Match: XP_004140061.1 (pentatricopeptide repeat-containing protein At5g27270 [Cucumis sativus] >KGN46657.1 hypothetical protein Csa_005270 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 6.1e-90
Identity = 170/176 (96.59%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPILLPPP IRTTRSPLK +NA+IFIIRLSVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPILLPPPFIRTTRSPLKSRNAQIFIIRLSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKTEGEY+MRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTEGEYNMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 176

[Close]

BLAST of Pay0017513 vs. NCBI nr
Match: XP_038900459.1 (pentatricopeptide repeat-containing protein At5g27270 [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 5.9e-85
Identity = 164/176 (93.18%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MESLKTSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSK 60
           MESLKTSFLSPI LP PS R+TR  LK KNA+IFIIR SVTPDPWSLSDGNPARPKPRSK
Sbjct: 1   MESLKTSFLSPIHLPSPSNRSTRYSLKSKNAQIFIIRSSVTPDPWSLSDGNPARPKPRSK 60

Query: 61  NAKRPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120
           NAK+PLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG
Sbjct: 61  NAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYG 120

Query: 121 KHVVAAIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           KHVVAAIRHVRSLSQKT+GEYDMRMEMASFV KLTFREMCIVLKEQKGWRQVRDVF
Sbjct: 121 KHVVAAIRHVRSLSQKTKGEYDMRMEMASFVGKLTFREMCIVLKEQKGWRQVRDVF 176

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BLAST of Pay0017513 vs. TAIR 10
Match: AT5G27270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-57
Identity = 112/171 (65.50%), Postives = 129/171 (75.44%), Query Frame = 0


Query: 6   TSFLSPILLPPPSIRTTRSPLKYKNAEIFIIRLSVTPDPWSLSDGNPARPKPRSKNAKRP 65
           T F   I LP    R +R  +K  ++        V PDPWSLSDGNP +PKPR +  K P
Sbjct: 10  THFNPSIFLPKIPSRNSRISIKSSSSS-----SKVRPDPWSLSDGNPEKPKPRYERPKHP 69

Query: 66  LSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLEDDRNGHLYGKHVVA 125
           LSDD+ARRIIK KAQYLS LRRNQG +A TPKWIKRTPEQMVQYLEDDRNG +YGKHVVA
Sbjct: 70  LSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYGKHVVA 129

Query: 126 AIRHVRSLSQKTEGEYDMRMEMASFVEKLTFREMCIVLKEQKGWRQVRDVF 177
           AI+ VR LSQ+ +G  DMR  M+SFV KL+FR+MC+VLKEQ+GWRQVRD F
Sbjct: 130 AIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFF 175

The following BLAST results are available for this feature:

BLAST of Pay0017513 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04647	3.5e-56	65.50	Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana OX...	[more]

BLAST of Pay0017513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQE2	1.3e-93	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7THY4	1.3e-93	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CJB8	1.3e-93	100.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270 OS=Cu...	[more]
A0A0A0KE22	3.0e-90	96.59	PPR_long domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G118350 PE...	[more]
A0A6J1FXR3	4.2e-84	90.29	pentatricopeptide repeat-containing protein At5g27270 OS=Cucurbita moschata OX=3...	[more]

BLAST of Pay0017513 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00992.1	2.7e-93	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008462786.1	2.7e-93	100.00	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g...	[more]
KAA0042408.1	2.7e-93	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_004140061.1	6.1e-90	96.59	pentatricopeptide repeat-containing protein At5g27270 [Cucumis sativus] >KGN4665...	[more]
XP_038900459.1	5.9e-85	93.18	pentatricopeptide repeat-containing protein At5g27270 [Benincasa hispida]	[more]

BLAST of Pay0017513 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27270.1	2.5e-57	65.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..70
None	No IPR available	PANTHER	PTHR47942:SF60	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 34..177
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 34..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0017513.1	Pay0017513.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0000373	Group II intron splicing
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003729	mRNA binding