Pay0014193 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014193
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 24402752 .. 24403158 (-)
RNA-Seq Expression	Pay0014193
Synteny	Pay0014193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGGAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGCAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

mRNA sequence

GTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGGAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGCAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

Coding sequence (CDS)

GTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGGAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGCAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

Protein sequence

YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS

Homology

[Close]

BLAST of Pay0014193 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-21
Identity = 49/120 (40.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 12   WSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISH 71
            W++K+Q  VA S+ EAE++A      +ALWL+ +L  ++++ +   +I  DN+  I+I++
Sbjct: 1281 WNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIAN 1340

Query: 72   NPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGV 131
            NP  +K+ KH +IK  F RE  ++  + L Y  TE+Q+ADI TKPLP  +F  LR KLG+
Sbjct: 1341 NPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Pay0014193 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-20
Identity = 50/131 (38.17%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            Y FT S G  SW SK Q+ VA ST EAE+IAAT T  + +WL++ L +L L QK+   + 
Sbjct: 1196 YLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VY 1255

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
             D+++AI +S N +++ +TKH +++  ++RE+     + ++   T +  AD+LTK +P  
Sbjct: 1256 CDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRN 1315

Query: 121  KFEFLRSKLGV 132
            KFE  +  +G+
Sbjct: 1316 KFELCKELVGM 1325

[Close]

BLAST of Pay0014193 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            Y   L     SWSSKKQ+ V +S+ EAE+ +   T+++  W+  +L +L +   +   I 
Sbjct: 1330 YIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIY 1389

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
             DN  A  +  NPVF+ + KH  I   F+R   +SG + +V+  T DQ+AD LTKPL   
Sbjct: 1390 CDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRT 1449

Query: 121  KFEFLRSKLGV 132
             F+   SK+GV
Sbjct: 1450 AFQNFASKIGV 1460

[Close]

BLAST of Pay0014193 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-16
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            Y   L     SWSSKKQ+ V +S+ EAE+ +   T+++  W+  +L +L ++      I 
Sbjct: 1313 YIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIY 1372

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
             DN  A  +  NPVF+ + KH  +   F+R   +SG + +V+  T DQ+AD LTKPL   
Sbjct: 1373 CDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRV 1432

Query: 121  KFEFLRSKLGV 132
             F+    K+GV
Sbjct: 1433 AFQNFSRKIGV 1443

[Close]

BLAST of Pay0014193 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 36/128 (28.12%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 3    FTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEILVD 62
            + L+  V    S K  +   ST EAE  A + +      L  ++ +LD ++  +  +L D
Sbjct: 1627 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD-KKPITKGLLTD 1686

Query: 63   NKAAIA--ISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 122
            +K+ I+  IS+N   + + + F  K   LR+      + + Y +T+  +AD++TKPLP  
Sbjct: 1687 SKSTISIIISNNEEKF-RNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIK 1746

Query: 123  KFEFLRSK 129
             F+ L +K
Sbjct: 1747 TFKLLTNK 1752

[Close]

BLAST of Pay0014193 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1181 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1240

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1241 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1300

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1301 KFEFLRSKLGVCNS 1314

[Close]

BLAST of Pay0014193 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1181 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1240

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1241 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1300

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1301 KFEFLRSKLGVCNS 1314

[Close]

BLAST of Pay0014193 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1297 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1356

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1357 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1416

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1417 KFEFLRSKLGVCNS 1430

[Close]

BLAST of Pay0014193 vs. ExPASy TrEMBL
Match: A0A5A7SP72 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00690 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
           YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 154 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 213

Query: 61  VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
           VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 214 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 273

Query: 121 KFEFLRSKLGVCNS 135
           KFEFLRSKLGVCNS
Sbjct: 274 KFEFLRSKLGVCNS 287

[Close]

BLAST of Pay0014193 vs. ExPASy TrEMBL
Match: A0A5D3DUI8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00540 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
           YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 640 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 699

Query: 61  VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
           VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 700 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 759

Query: 121 KFEFLRSKLGVCNS 135
           KFEFLRSKLGVCNS
Sbjct: 760 KFEFLRSKLGVCNS 773

[Close]

BLAST of Pay0014193 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1181 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1240

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1241 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1300

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1301 KFEFLRSKLGVCNS 1314

[Close]

BLAST of Pay0014193 vs. NCBI nr
Match: KAA0032680.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
           YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 154 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 213

Query: 61  VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
           VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 214 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 273

Query: 121 KFEFLRSKLGVCNS 135
           KFEFLRSKLGVCNS
Sbjct: 274 KFEFLRSKLGVCNS 287

[Close]

BLAST of Pay0014193 vs. NCBI nr
Match: TYK27376.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
           YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 640 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 699

Query: 61  VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
           VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 700 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 759

Query: 121 KFEFLRSKLGVCNS 135
           KFEFLRSKLGVCNS
Sbjct: 760 KFEFLRSKLGVCNS 773

[Close]

BLAST of Pay0014193 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1297 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1356

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1357 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1416

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1417 KFEFLRSKLGVCNS 1430

[Close]

BLAST of Pay0014193 vs. NCBI nr
Match: KAA0036309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0039006.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0039248.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0063721.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ96423.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
            YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL
Sbjct: 1181 YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 1240

Query: 61   VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 120
            VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC
Sbjct: 1241 VDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTC 1300

Query: 121  KFEFLRSKLGVCNS 135
            KFEFLRSKLGVCNS
Sbjct: 1301 KFEFLRSKLGVCNS 1314

[Close]

BLAST of Pay0014193 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1   YCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLEQKKSTEIL 60
           YC  L + + SW SKKQ++V++S+AEAE+ A +   ++ +WL +   +L L   K T + 
Sbjct: 463 YCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLF 522

Query: 61  VDNKAAIAISHNPVFYKKTKHFNIKLFFLRE 92
            DN AAI I+ N VF+++TKH       +RE
Sbjct: 523 CDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Pay0014193 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	5.2e-21	40.83	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.6e-20	38.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.0e-17	37.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-16	35.88	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12490	6.8e-05	28.13	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of Pay0014193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2V7	1.7e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	1.7e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	1.7e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SP72	1.7e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DUI8	1.7e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Pay0014193 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95793.1	3.5e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0032680.1	3.5e-67	100.00	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK27376.1	3.5e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	3.5e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036309.1	3.5e-67	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Pay0014193 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.4e-13	39.56	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 4..133
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..133
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..119 e-value: 3.67983E-60 score: 179.972

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014193.1	Pay0014193.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004713	protein tyrosine kinase activity
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0008270	zinc ion binding