Pay0012859 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012859
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Location	chr06: 27554852 .. 27555085 (+)
RNA-Seq Expression	Pay0012859
Synteny	Pay0012859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGTTTTCGAGAGGGAGATTTGGTATTAAAAAGAATACTTCCATTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATGAAGGTCCATTCGTAGTGAAAAAAGCTTTTTCAGGAGGAGCTCTACTTTTGACTAATATGAATGGCGTTGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCAAAGATATTATGCATGA

mRNA sequence

ATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGTTTTCGAGAGGGAGATTTGGTATTAAAAAGAATACTTCCATTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATGAAGGTCCATTCGTAGTGAAAAAAGCTTTTTCAGGAGGAGCTCTACTTTTGACTAATATGAATGGCGTTGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCAAAGATATTATGCATGA

Coding sequence (CDS)

ATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGTTTTCGAGAGGGAGATTTGGTATTAAAAAGAATACTTCCATTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATGAAGGTCCATTCGTAGTGAAAAAAGCTTTTTCAGGAGGAGCTCTACTTTTGACTAATATGAATGGCGTTGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCAAAGATATTATGCATGA

Protein sequence

MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNGVELKNPVNSDYVQRYYA

Homology

[Close]

BLAST of Pay0012859 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 1862 MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 1921

Query: 61   VELKNPVNSDYVQRYYA 78
            +ELKNPVNSDYV+RYYA
Sbjct: 1922 IELKNPVNSDYVRRYYA 1938

[Close]

BLAST of Pay0012859 vs. ExPASy TrEMBL
Match: A0A5D3CXE2 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003720 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.8e-36
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
           MRAYNKKVHPRSFREGDL+LKRILPFQKDHRGKWTPNYEGPFVVKKAFSG ALLLTNM+G
Sbjct: 134 MRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYEGPFVVKKAFSGRALLLTNMDG 193

Query: 61  VELKNPVNSDYVQRYYA 78
           VELKNP+NSDYV+RYYA
Sbjct: 194 VELKNPMNSDYVRRYYA 210

[Close]

BLAST of Pay0012859 vs. ExPASy TrEMBL
Match: A0A5A7T1D0 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002530 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
           MRAYNKKVH RSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 293 MRAYNKKVHTRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 352

Query: 61  VELKNPVNSDYVQRYYA 78
           VELK+PVNSDYV+RYYA
Sbjct: 353 VELKSPVNSDYVRRYYA 369

[Close]

BLAST of Pay0012859 vs. ExPASy TrEMBL
Match: A0A5D3E1A3 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00260 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
           MRAYNKKVH RSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFS GALLLTNM+ 
Sbjct: 293 MRAYNKKVHTRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSEGALLLTNMDD 352

Query: 61  VELKNPVNSDYVQRYYA 78
           VELKNPVNSDYV+RYYA
Sbjct: 353 VELKNPVNSDYVRRYYA 369

[Close]

BLAST of Pay0012859 vs. ExPASy TrEMBL
Match: A0A5D3DNF8 (Gypsy retrotransposon integrase-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001000 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
           MRAYNKKVH RSF+EGDLVLKRI PFQKDHR KWTPNYEGPFVVKKAFSGGALLLTNM+ 
Sbjct: 142 MRAYNKKVHSRSFQEGDLVLKRIFPFQKDHREKWTPNYEGPFVVKKAFSGGALLLTNMDD 201

Query: 61  VELKNPVNSDYVQRYYA 78
           VE KN VNSDYVQRYYA
Sbjct: 202 VESKNIVNSDYVQRYYA 218

[Close]

BLAST of Pay0012859 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 1862 MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 1921

Query: 61   VELKNPVNSDYVQRYYA 78
            +ELKNPVNSDYV+RYYA
Sbjct: 1922 IELKNPVNSDYVRRYYA 1938

[Close]

BLAST of Pay0012859 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 2559 MRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 2618

Query: 61   VELKNPVNSDYVQRYYA 78
            VELKNPVNSDYV+RYYA
Sbjct: 2619 VELKNPVNSDYVRRYYA 2635

[Close]

BLAST of Pay0012859 vs. NCBI nr
Match: XP_031741309.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 2212 MRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 2271

Query: 61   VELKNPVNSDYVQRYYA 78
            VELKNPVNSDYV+RYYA
Sbjct: 2272 VELKNPVNSDYVRRYYA 2288

[Close]

BLAST of Pay0012859 vs. NCBI nr
Match: XP_031737561.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 2214 MRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 2273

Query: 61   VELKNPVNSDYVQRYYA 78
            VELKNPVNSDYV+RYYA
Sbjct: 2274 VELKNPVNSDYVRRYYA 2290

[Close]

BLAST of Pay0012859 vs. NCBI nr
Match: XP_031738857.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1    MRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMNG 60
            MRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNM+G
Sbjct: 2227 MRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG 2286

Query: 61   VELKNPVNSDYVQRYYA 78
            VELKNPVNSDYV+RYYA
Sbjct: 2287 VELKNPVNSDYVRRYYA 2303

The following BLAST results are available for this feature:

BLAST of Pay0012859 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7R4	5.2e-37	96.10	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A5D3CXE2	9.8e-36	93.51	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis m...	[more]
A0A5A7T1D0	1.3e-35	94.81	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3E1A3	1.9e-34	93.51	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DNF8	3.9e-32	89.61	Gypsy retrotransposon integrase-like protein 1 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Pay0012859 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037621.1	1.1e-36	96.10	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
XP_031738551.1	5.4e-36	96.10	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
XP_031741309.1	5.4e-36	96.10	LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]	[more]
XP_031737561.1	5.4e-36	96.10	LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]	[more]
XP_031738857.1	5.4e-36	96.10	LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]	[more]

BLAST of Pay0012859 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012859.1	Pay0012859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity