Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAGTATTGATTCAGCAAAAACTCTCTGAACTCCATTAGAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATGTACTATAAATAGTACAATAGATCCTAAGGCCAACATTGTGGAAAATAGACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAAGTTTCAAATAAAAAACTGTGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAACATGCTTAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGAGTAAATACAAGGAATAGTGGGTAGACACTGGTGCTACTCGTCATATTTGTGCCAACAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGATTATTTGAGTGATGGTCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA
mRNA sequence
ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAATTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA
Coding sequence (CDS)
ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAATTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA
Protein sequence
MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYSKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRGRKIPQSNKKRKFSGEFNGKCFNCNKMGHQSKDCQQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEIINNNKVSTFAYIVESFVWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
Homology
BLAST of Pay0012568 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 2.8e-09
Identity = 42/138 (30.43%), Postives = 68/138 (49.28%), Query Frame = 0
Query: 197 MGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKF 256
MGN+S SK+ G G + +K G L L +V HVPD+R NL+S L ++G++ F + K+
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383
Query: 257 VLSKNEIINNNKVS------TFAYI-----------VESFVWHSRLEHVNFNSLRRLINM 316
L+K ++ V+ T A I + +WH R+ H++ L+ L
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKK 443
Query: 317 NLIPKFTFDTNHRCEVCV 318
+LI T C+ C+
Sbjct: 444 SLISYAKGTTVKPCDYCL 461
BLAST of Pay0012568 vs. ExPASy TrEMBL
Match:
A5CBN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)
HSP 1 Score: 399.1 bits (1024), Expect = 1.8e-107
Identity = 222/414 (53.62%), Postives = 274/414 (66.18%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FL ++ IL GET+KEK +D WKH+++LC+NY+LNGLDNTLYNVY
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285
Query: 61 -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
KKY TE A KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNNS 405
Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKD--------- 240
+ P++NKKRK + F GKC+NC K GH+S D
Sbjct: 406 MEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWWV 465
Query: 241 --------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH 300
C ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Sbjct: 466 DTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVLH 525
Query: 301 VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------IN 319
VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+ IN
Sbjct: 526 VPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSIN 585
BLAST of Pay0012568 vs. ExPASy TrEMBL
Match:
A0A438CSS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_823 PE=4 SV=1)
HSP 1 Score: 396.7 bits (1018), Expect = 8.9e-107
Identity = 227/452 (50.22%), Postives = 276/452 (61.06%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FL ++ IL GET+KEK A+D WKH ++LC+NY+LNGLDNTLYNVY
Sbjct: 33 MLFYLTTLNLARFLHEECPILEEGETNKEKVAAVDAWKHFDFLCRNYVLNGLDNTLYNVY 92
Query: 61 -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
KKY TE A KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 93 CSLKIAKELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 152
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR
Sbjct: 153 GMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKCKEMNLEELIVRLRIEEDNRKSEKKGNNS 212
Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKDC-------- 240
+ P++NKKRK + F GKC+NC K GH+S DC
Sbjct: 213 MEAKANVIEQGPKTNKKRKHGDQNQNQGSNAAKKFKGKCYNCGKTGHKSNDCRKPKKEKK 272
Query: 241 ------------------------------------------------------------ 300
Sbjct: 273 PQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVE 332
Query: 301 --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLV 319
++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLV
Sbjct: 333 QNEELFMGNSSSSKVEGRGKVILKMTSGKELTLNDVLHVPDIHKNLVSGSLLSKNGFKLV 392
BLAST of Pay0012568 vs. ExPASy TrEMBL
Match:
A0A438KHE8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1378 PE=4 SV=1)
HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 211/455 (46.37%), Postives = 266/455 (58.46%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DAL L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDALKLKEDEHDIQAISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIHKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. ExPASy TrEMBL
Match:
A0A438GTK9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_836 PE=4 SV=1)
HSP 1 Score: 354.4 bits (908), Expect = 5.0e-94
Identity = 211/455 (46.37%), Postives = 265/455 (58.24%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DA L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDMKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAVIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCFDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. ExPASy TrEMBL
Match:
A5AEN5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011340 PE=4 SV=1)
HSP 1 Score: 353.2 bits (905), Expect = 1.1e-93
Identity = 210/455 (46.15%), Postives = 265/455 (58.24%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DA L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. NCBI nr
Match:
CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])
HSP 1 Score: 399.1 bits (1024), Expect = 3.7e-107
Identity = 222/414 (53.62%), Postives = 274/414 (66.18%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FL ++ IL GET+KEK +D WKH+++LC+NY+LNGLDNTLYNVY
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285
Query: 61 -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
KKY TE A KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNNS 405
Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKD--------- 240
+ P++NKKRK + F GKC+NC K GH+S D
Sbjct: 406 MEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWWV 465
Query: 241 --------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH 300
C ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Sbjct: 466 DTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVLH 525
Query: 301 VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------IN 319
VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+ IN
Sbjct: 526 VPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSIN 585
BLAST of Pay0012568 vs. NCBI nr
Match:
RVW26252.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-106
Identity = 227/452 (50.22%), Postives = 276/452 (61.06%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FL ++ IL GET+KEK A+D WKH ++LC+NY+LNGLDNTLYNVY
Sbjct: 33 MLFYLTTLNLARFLHEECPILEEGETNKEKVAAVDAWKHFDFLCRNYVLNGLDNTLYNVY 92
Query: 61 -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
KKY TE A KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 93 CSLKIAKELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 152
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR
Sbjct: 153 GMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKCKEMNLEELIVRLRIEEDNRKSEKKGNNS 212
Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKDC-------- 240
+ P++NKKRK + F GKC+NC K GH+S DC
Sbjct: 213 MEAKANVIEQGPKTNKKRKHGDQNQNQGSNAAKKFKGKCYNCGKTGHKSNDCRKPKKEKK 272
Query: 241 ------------------------------------------------------------ 300
Sbjct: 273 PQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVE 332
Query: 301 --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLV 319
++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLV
Sbjct: 333 QNEELFMGNSSSSKVEGRGKVILKMTSGKELTLNDVLHVPDIHKNLVSGSLLSKNGFKLV 392
BLAST of Pay0012568 vs. NCBI nr
Match:
RVX20631.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 356.7 bits (914), Expect = 2.1e-94
Identity = 211/455 (46.37%), Postives = 266/455 (58.46%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DAL L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDALKLKEDEHDIQAISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIHKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. NCBI nr
Match:
RVW75537.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 354.4 bits (908), Expect = 1.0e-93
Identity = 211/455 (46.37%), Postives = 265/455 (58.24%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DA L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDMKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAVIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCFDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. NCBI nr
Match:
CAN66637.1 (hypothetical protein VITISV_011340 [Vitis vinifera])
HSP 1 Score: 353.2 bits (905), Expect = 2.3e-93
Identity = 210/455 (46.15%), Postives = 265/455 (58.24%), Query Frame = 0
Query: 1 MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
MLFYLTTL LA+FLT+DA L E D + AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56 MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115
Query: 61 S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
S +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175
Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235
Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
K +N K K S +F GKCFNC K GH+S DC
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295
Query: 241 ------------------------------------------------------------ 300
Sbjct: 296 PKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355
Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
+++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415
BLAST of Pay0012568 vs. TAIR 10
Match:
AT4G00980.1 (zinc knuckle (CCHC-type) family protein )
HSP 1 Score: 70.1 bits (170), Expect = 3.7e-12
Identity = 60/237 (25.32%), Postives = 100/237 (42.19%), Query Frame = 0
Query: 37 WKHAEYLCKNYILNGLDNTLYNVYSKK--------------YTTEVADAKKFIVGKFLDY 96
W +YLC +++N L + LY YS+K Y + + +K+ V K++++
Sbjct: 253 WLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEF 312
Query: 97 KMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKR--- 156
+MV+ + I+ QVQ I I + M L E F V++II K PPSW+ F L +
Sbjct: 313 RMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLP 372
Query: 157 -----KEIKLEELVVRIGIE--------ENNRGRKIPQSNKKRKFSGEFNGK-------- 216
+ +K EE ++R G + +++ + P + S K
Sbjct: 373 VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDE 432
Query: 217 -----CFNCNKMGHQSKDCQQLFMGNSSTSKVEGQ-----GKVILKMTSGKELTLNN 226
C NC + GH +K C G+ S + G+ V + S + T NN
Sbjct: 433 RVIIVCDNCGRKGHLAKHC----WGSKSDERASGKSNRINSSVAAPVESETQATTNN 485
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 2.8e-09 | 30.43 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A5CBN2 | 1.8e-107 | 53.62 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1 | [more] |
A0A438CSS8 | 8.9e-107 | 50.22 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438KHE8 | 1.0e-94 | 46.37 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438GTK9 | 5.0e-94 | 46.37 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A5AEN5 | 1.1e-93 | 46.15 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011340 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
CAN66576.1 | 3.7e-107 | 53.62 | hypothetical protein VITISV_016964 [Vitis vinifera] | [more] |
RVW26252.1 | 1.8e-106 | 50.22 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVX20631.1 | 2.1e-94 | 46.37 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW75537.1 | 1.0e-93 | 46.37 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
CAN66637.1 | 2.3e-93 | 46.15 | hypothetical protein VITISV_011340 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
AT4G00980.1 | 3.7e-12 | 25.32 | zinc knuckle (CCHC-type) family protein | [more] |