Pay0012568 (gene) Melon (Payzawat) v1

Overview
NamePay0012568
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr04: 21265983 .. 21267341 (-)
RNA-Seq ExpressionPay0012568
SyntenyPay0012568
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAGTATTGATTCAGCAAAAACTCTCTGAACTCCATTAGAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATGTACTATAAATAGTACAATAGATCCTAAGGCCAACATTGTGGAAAATAGACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAAGTTTCAAATAAAAAACTGTGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAACATGCTTAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGAGTAAATACAAGGAATAGTGGGTAGACACTGGTGCTACTCGTCATATTTGTGCCAACAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGATTATTTGAGTGATGGTCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

mRNA sequence

ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAATTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

Coding sequence (CDS)

ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATGGAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAATTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

Protein sequence

MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYSKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRGRKIPQSNKKRKFSGEFNGKCFNCNKMGHQSKDCQQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEIINNNKVSTFAYIVESFVWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
Homology
BLAST of Pay0012568 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-09
Identity = 42/138 (30.43%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 197 MGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKF 256
           MGN+S SK+ G G + +K   G  L L +V HVPD+R NL+S   L ++G++  F + K+
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 257 VLSKNEIINNNKVS------TFAYI-----------VESFVWHSRLEHVNFNSLRRLINM 316
            L+K  ++    V+      T A I           +   +WH R+ H++   L+ L   
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKK 443

Query: 317 NLIPKFTFDTNHRCEVCV 318
           +LI      T   C+ C+
Sbjct: 444 SLISYAKGTTVKPCDYCL 461

BLAST of Pay0012568 vs. ExPASy TrEMBL
Match: A5CBN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.8e-107
Identity = 222/414 (53.62%), Postives = 274/414 (66.18%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FL ++  IL  GET+KEK   +D WKH+++LC+NY+LNGLDNTLYNVY
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
                         KKY TE A  KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
            M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR         
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNNS 405

Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKD--------- 240
                    + P++NKKRK   +           F GKC+NC K GH+S D         
Sbjct: 406 MEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWWV 465

Query: 241 --------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH 300
                   C               ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Sbjct: 466 DTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVLH 525

Query: 301 VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------IN 319
           VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       IN
Sbjct: 526 VPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSIN 585

BLAST of Pay0012568 vs. ExPASy TrEMBL
Match: A0A438CSS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_823 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 8.9e-107
Identity = 227/452 (50.22%), Postives = 276/452 (61.06%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FL ++  IL  GET+KEK  A+D WKH ++LC+NY+LNGLDNTLYNVY
Sbjct: 33  MLFYLTTLNLARFLHEECPILEEGETNKEKVAAVDAWKHFDFLCRNYVLNGLDNTLYNVY 92

Query: 61  -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
                         KKY TE A  KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 93  CSLKIAKELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 152

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
            M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR         
Sbjct: 153 GMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKCKEMNLEELIVRLRIEEDNRKSEKKGNNS 212

Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKDC-------- 240
                    + P++NKKRK   +           F GKC+NC K GH+S DC        
Sbjct: 213 MEAKANVIEQGPKTNKKRKHGDQNQNQGSNAAKKFKGKCYNCGKTGHKSNDCRKPKKEKK 272

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 273 PQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVE 332

Query: 301 --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLV 319
             ++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLV
Sbjct: 333 QNEELFMGNSSSSKVEGRGKVILKMTSGKELTLNDVLHVPDIHKNLVSGSLLSKNGFKLV 392

BLAST of Pay0012568 vs. ExPASy TrEMBL
Match: A0A438KHE8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1378 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 211/455 (46.37%), Postives = 266/455 (58.46%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DAL L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDALKLKEDEHDIQAISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIHKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. ExPASy TrEMBL
Match: A0A438GTK9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_836 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 5.0e-94
Identity = 211/455 (46.37%), Postives = 265/455 (58.24%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDMKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAVIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCFDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. ExPASy TrEMBL
Match: A5AEN5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.1e-93
Identity = 210/455 (46.15%), Postives = 265/455 (58.24%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 399.1 bits (1024), Expect = 3.7e-107
Identity = 222/414 (53.62%), Postives = 274/414 (66.18%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FL ++  IL  GET+KEK   +D WKH+++LC+NY+LNGLDNTLYNVY
Sbjct: 226 MLFYLTTLNLARFLHEECPILEEGETNKEKVAVVDAWKHSDFLCRNYMLNGLDNTLYNVY 285

Query: 61  -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
                         KKY TE A  KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 286 CSLKTAKELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 345

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
            M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR         
Sbjct: 346 GMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNNS 405

Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKD--------- 240
                    + P++NKKRK   +           F GKC+NC K GH+S D         
Sbjct: 406 MEAKANVIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYRNTKEWWV 465

Query: 241 --------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH 300
                   C               ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Sbjct: 466 DTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKELTLNDVLH 525

Query: 301 VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------IN 319
           VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       IN
Sbjct: 526 VPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMTVVPKSIN 585

BLAST of Pay0012568 vs. NCBI nr
Match: RVW26252.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 396.7 bits (1018), Expect = 1.8e-106
Identity = 227/452 (50.22%), Postives = 276/452 (61.06%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FL ++  IL  GET+KEK  A+D WKH ++LC+NY+LNGLDNTLYNVY
Sbjct: 33  MLFYLTTLNLARFLHEECPILEEGETNKEKVAAVDAWKHFDFLCRNYVLNGLDNTLYNVY 92

Query: 61  -------------SKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
                         KKY TE A  KKFIVGKFLD+KM+DSKT+ISQVQE+QVILH+IH+E
Sbjct: 93  CSLKIAKELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSE 152

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG-------- 180
            M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR         
Sbjct: 153 GMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKCKEMNLEELIVRLRIEEDNRKSEKKGNNS 212

Query: 181 --------RKIPQSNKKRKFSGE-----------FNGKCFNCNKMGHQSKDC-------- 240
                    + P++NKKRK   +           F GKC+NC K GH+S DC        
Sbjct: 213 MEAKANVIEQGPKTNKKRKHGDQNQNQGSNAAKKFKGKCYNCGKTGHKSNDCRKPKKEKK 272

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 273 PQANVTEFDKLSNDVFEMNLSAVVSECNIVGNTKEWWVDTGATCHICSNKWMFSTYKPVE 332

Query: 301 --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLV 319
             ++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLV
Sbjct: 333 QNEELFMGNSSSSKVEGRGKVILKMTSGKELTLNDVLHVPDIHKNLVSGSLLSKNGFKLV 392

BLAST of Pay0012568 vs. NCBI nr
Match: RVX20631.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 356.7 bits (914), Expect = 2.1e-94
Identity = 211/455 (46.37%), Postives = 266/455 (58.46%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DAL L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDALKLKEDEHDIQAISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIHKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. NCBI nr
Match: RVW75537.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-93
Identity = 211/455 (46.37%), Postives = 265/455 (58.24%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDMKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAVIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVSDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCFDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. NCBI nr
Match: CAN66637.1 (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 353.2 bits (905), Expect = 2.3e-93
Identity = 210/455 (46.15%), Postives = 265/455 (58.24%), Query Frame = 0

Query: 1   MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY 60
           MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVY
Sbjct: 56  MLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVY 115

Query: 61  S-------------KKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAE 120
           S             +KY TE A AKKF+VG+FLDYKMVDSKT++SQVQE+QVILH+IHAE
Sbjct: 116 SDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAE 175

Query: 121 NMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR--------- 180
            M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR         
Sbjct: 176 GMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHT 235

Query: 181 -------------GRKIPQSNKKRKFS-----------GEFNGKCFNCNKMGHQSKDC-- 240
                          K   +N K K S            +F GKCFNC K GH+S DC  
Sbjct: 236 LNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRL 295

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 296 PKKNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFST 355

Query: 301 -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKN 319
                  +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +
Sbjct: 356 FEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNH 415

BLAST of Pay0012568 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-12
Identity = 60/237 (25.32%), Postives = 100/237 (42.19%), Query Frame = 0

Query: 37  WKHAEYLCKNYILNGLDNTLYNVYSKK--------------YTTEVADAKKFIVGKFLDY 96
           W   +YLC  +++N L + LY  YS+K              Y  + + +K+  V K++++
Sbjct: 253 WLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEF 312

Query: 97  KMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKR--- 156
           +MV+ + I+ QVQ    I   I +  M L E F V++II K PPSW+ F   L  +    
Sbjct: 313 RMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLMEEEYLP 372

Query: 157 -----KEIKLEELVVRIGIE--------ENNRGRKIPQSNKKRKFSGEFNGK-------- 216
                + +K EE ++R G +         +++  + P      + S     K        
Sbjct: 373 VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDE 432

Query: 217 -----CFNCNKMGHQSKDCQQLFMGNSSTSKVEGQ-----GKVILKMTSGKELTLNN 226
                C NC + GH +K C     G+ S  +  G+       V   + S  + T NN
Sbjct: 433 RVIIVCDNCGRKGHLAKHC----WGSKSDERASGKSNRINSSVAAPVESETQATTNN 485

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109782.8e-0930.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A5CBN21.8e-10753.62Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1[more]
A0A438CSS88.9e-10750.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438KHE81.0e-9446.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438GTK95.0e-9446.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5AEN51.1e-9346.15Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
CAN66576.13.7e-10753.62hypothetical protein VITISV_016964 [Vitis vinifera][more]
RVW26252.11.8e-10650.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVX20631.12.1e-9446.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW75537.11.0e-9346.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN66637.12.3e-9346.15hypothetical protein VITISV_011340 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT4G00980.13.7e-1225.32zinc knuckle (CCHC-type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 178..194
e-value: 2.5E-4
score: 30.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 177..194
e-value: 5.3E-6
score: 26.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 178..194
score: 10.064789
NoneNo IPR availableGENE3D4.10.60.10coord: 173..205
e-value: 1.9E-5
score: 26.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 63..159
e-value: 3.1E-9
score: 36.7
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 1..193
coord: 195..253
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 257..317
e-value: 1.2E-12
score: 47.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 169..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0012568.1Pay0012568.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding